Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

16547552 .. 16549535

Gene Structure 1984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001505

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGACTAGACAGAGATCATATGGAAATGTTCCCCAGCCACATGCCATCTTATATTACTCTCAGAGAACATCTAATGGAGGTCTTCTCATAGCTGAAGCCACTGGTGTTTCTGACACAGCACAAGGGTATCCAGATACTCCTGGTATATGGACAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGCTAAAGGGGGTATCTTCTTCTGTCAGATTTGGCATGTGGGGAGGGTTTCAAATACTGGCTTTCAGCCAAATGGGCAAGCTCCAATCTCTTCTACTGACAAGCCCCCAACGCCCCAAGCTAATGGCGTTGATGTTGCCCAGTTCACCCCTCCAAGACGATTAAGGACAGATGAAATTCCTCAAATTGTCAATGATTTTAGACTTGCTGCAAGGAATGCTATGGAAGCTGGCTTTGATGGGGTTGAAATTCATGGCGCCCAAGGCTACCTTATCGATCAATTTTTAAAAGATCAAGTAAATGATCGAACAGACCAATATGGTGGATCTCTAGGAAAACGTTGCCGATTTGCACTAGACATTGTTGAAGCTGTTGTCAACGAGATAGGAGCAGATAAAGTTGGAATTAGATTATCTCCATTTGAATCCGGAGATTCTAATCCAAAGGAATTGGGACTCTATCTAGTCAATTCCTTGAACAAATATGGAATCCTGTACTGCCACATGTTTGAGCCAGGAATGAAGACAGTTGGGGAAAAAATTGAATGTCCCCACAGTCTTGTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGGAAGATGGGAACAATGCTGTGGCTGAGAGCCGTGCAGATCTTATTGCTTTTGGTCGTTGGTTCTTGGCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAATAAGTACAACATAAATACATTCTGCATATCTGATCCGGTTCTTGGTTACACTGATTATCCATTTCTTGACAGCACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

336

Amino Acids

36.91

Weight (kDa)

5.73

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	3 - 308	9.3e-74	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	782
AccB1I	GGYRCC	2 cut(s)	452, 782
AccIII	TCCGGA	1 cut(s)	623
AclI	AACGTT	1 cut(s)	535
AclWI	GGATC	2 cut(s)	529, 953
AcsI	RAATTY	2 cut(s)	372, 444
AcuI	CTGAAG	1 cut(s)	114
AcyI	GRCGYC	1 cut(s)	453
AfaI	GTAC	5 cut(s)	195, 692, 759, 784, 932
AfiI	CCNNNNNNNGG	1 cut(s)	968
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	7 cut(s)	167, 249, 443, 563, 620, 673, 740
AjnI	CCWGG	2 cut(s)	139, 709
AluBI	AGCT	6 cut(s)	92, 278, 317, 425, 566, 910
AluI	AGCT	6 cut(s)	92, 278, 317, 425, 566, 910
AlwI	GGATC	2 cut(s)	529, 953
Aor13HI	TCCGGA	1 cut(s)	623
ApeKI	GCWGC	2 cut(s)	404, 794
ApoI	RAATTY	2 cut(s)	372, 444
Asp718I	GGTACC	1 cut(s)	782
AspLEI	GCGC	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	334
BaeI	ACNNNNGTAYC	2 cut(s)	110, 143
BanI	GGYRCC	2 cut(s)	452, 782
BbsI	GAAGAC	2 cut(s)	74, 725
BbvI	GCAGC	2 cut(s)	391, 781
BccI	CCATC	3 cut(s)	53, 428, 812
BceAI	ACGGC	1 cut(s)	828
BciT130I	CCWGG	2 cut(s)	141, 711
BciVI	GTATCC	1 cut(s)	138
BfaI	CTAG	4 cut(s)	6, 527, 551, 659
BfoI	RGCGCY	1 cut(s)	456
BfuI	GTATCC	1 cut(s)	138
BglI	GCCNNNNNGGC	1 cut(s)	271
BglII	AGATCT	1 cut(s)	850
BisI	GCNGC	2 cut(s)	405, 795
BlsI	GCNGC	2 cut(s)	406, 796
Bme1390I	CCNGG	2 cut(s)	141, 711
BmiI	GGNNCC	2 cut(s)	454, 784
BmrFI	CCNGG	2 cut(s)	141, 711
BmrI	ACTGGG	1 cut(s)	331
BmuI	ACTGGG	1 cut(s)	331
BpiI	GAAGAC	2 cut(s)	74, 725
BplI	GAGNNNNNCTC	2 cut(s)	69, 101
Bsa29I	ATCGAT	1 cut(s)	471
BsaBI	GATNNNNATC	1 cut(s)	633
BsaHI	GRCGYC	1 cut(s)	453
BsaJI	CCNNGG	1 cut(s)	457
BsaWI	WCCGGW	2 cut(s)	623, 961
Bsc4I	CCNNNNNNNGG	1 cut(s)	968
Bse1I	ACTGG	3 cut(s)	106, 259, 337
Bse3DI	GCAATG	1 cut(s)	789
Bse8I	GATNNNNATC	1 cut(s)	633
BseAI	TCCGGA	1 cut(s)	623
BseBI	CCWGG	2 cut(s)	141, 711
BseCI	ATCGAT	1 cut(s)	471
BseDI	CCNNGG	1 cut(s)	457
BseJI	GATNNNNATC	1 cut(s)	633
BseLI	CCNNNNNNNGG	1 cut(s)	968
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	2 cut(s)	74, 828
BseNI	ACTGG	3 cut(s)	106, 259, 337
BseRI	GAGGAG	1 cut(s)	909
BseXI	GCAGC	2 cut(s)	391, 781
BseYI	CCCAGC	1 cut(s)	33
BsgI	GTGCAG	1 cut(s)	867
BshNI	GGYRCC	2 cut(s)	452, 782
BshVI	ATCGAT	1 cut(s)	471
BsiSI	CCGG	2 cut(s)	624, 962
BslFI	GGGAC	2 cut(s)	663, 729
BslI	CCNNNNNNNGG	1 cut(s)	968
BsmFI	GGGAC	2 cut(s)	663, 729
BsmI	GAATGC	1 cut(s)	418
Bsp13I	TCCGGA	1 cut(s)	623
Bsp1407I	TGTACA	1 cut(s)	193
Bsp143I	GATC	7 cut(s)	14, 472, 487, 499, 521, 850, 958
BspCNI	CTCAG	2 cut(s)	73, 829
BspDI	ATCGAT	1 cut(s)	471
BspEI	TCCGGA	1 cut(s)	623
BspLI	GGNNCC	2 cut(s)	454, 784
BspPI	GGATC	2 cut(s)	529, 953
BspT107I	GGYRCC	2 cut(s)	452, 782
BsrDI	GCAATG	1 cut(s)	789
BsrGI	TGTACA	1 cut(s)	193
BsrI	ACTGG	3 cut(s)	106, 259, 337
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	7 cut(s)	14, 472, 487, 499, 521, 850, 958
BssNI	GRCGYC	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	457
Bst2UI	CCWGG	2 cut(s)	141, 711
Bst4CI	ACNGT	2 cut(s)	724, 752
Bst6I	CTCTTC	1 cut(s)	292
BstACI	GRCGYC	1 cut(s)	453
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstAUI	TGTACA	1 cut(s)	193
BstC8I	GCNNGC	2 cut(s)	276, 427
BstDEI	CTNAG	2 cut(s)	60, 837
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	7 cut(s)	17, 475, 490, 502, 524, 853, 961
BstMBI	GATC	7 cut(s)	14, 472, 487, 499, 521, 850, 958
BstMWI	GCNNNNNNNGC	6 cut(s)	197, 271, 307, 413, 422, 459
BstNI	CCWGG	2 cut(s)	141, 711
BstNSI	RCATGY	4 cut(s)	44, 200, 236, 703
BstSCI	CCNGG	2 cut(s)	139, 709
BstV1I	GCAGC	2 cut(s)	391, 781
BstV2I	GAAGAC	2 cut(s)	74, 725
BstX2I	RGATCY	2 cut(s)	521, 850
BstXI	CCANNNNNNTGG	2 cut(s)	320, 518
BstYI	RGATCY	2 cut(s)	521, 850
Bsu15I	ATCGAT	1 cut(s)	471
BsuI	GTATCC	1 cut(s)	138
BsuTUI	ATCGAT	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	99, 975
Cac8I	GCNNGC	2 cut(s)	276, 427
CfoI	GCGC	1 cut(s)	455
ClaI	ATCGAT	1 cut(s)	471
Csp6I	GTAC	5 cut(s)	194, 691, 758, 783, 931
CviAII	CATG	7 cut(s)	41, 171, 197, 233, 449, 700, 763
CviQI	GTAC	5 cut(s)	194, 691, 758, 783, 931
DdeI	CTNAG	2 cut(s)	60, 837
DinI	GGCGCC	1 cut(s)	454
DpnI	GATC	7 cut(s)	16, 474, 489, 501, 523, 852, 960
DpnII	GATC	7 cut(s)	14, 472, 487, 499, 521, 850, 958
DraI	TTTAAA	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	457
Eco57I	CTGAAG	1 cut(s)	114
EcoRII	CCWGG	2 cut(s)	139, 709
EcoT14I	CCWWGG	1 cut(s)	457
EgeI	GGCGCC	1 cut(s)	454
EheI	GGCGCC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	457
FaeI	CATG	7 cut(s)	44, 174, 200, 236, 452, 703, 766
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	2 cut(s)	663, 729
FatI	CATG	7 cut(s)	40, 170, 196, 232, 448, 699, 762
FauNDI	CATATG	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	405, 795
Fsp4HI	GCNGC	2 cut(s)	405, 795
FspBI	CTAG	4 cut(s)	6, 527, 551, 659
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	2 cut(s)	405, 795
GsaI	CCCAGC	1 cut(s)	37
HaeII	RGCGCY	1 cut(s)	456
HapII	CCGG	2 cut(s)	624, 962
HhaI	GCGC	1 cut(s)	455
Hin1I	GRCGYC	1 cut(s)	453
Hin1II	CATG	7 cut(s)	44, 174, 200, 236, 452, 703, 766
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	4 cut(s)	620, 629, 651, 684
HpaII	CCGG	2 cut(s)	624, 962
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	2 cut(s)	342, 574
Hpy188I	TCNGA	4 cut(s)	63, 112, 225, 958
Hpy188III	TCNNGA	4 cut(s)	131, 624, 887, 992
Hpy8I	GTNNAC	2 cut(s)	342, 574
HpyAV	CCTTC	1 cut(s)	796
HpyCH4III	ACNGT	2 cut(s)	724, 752
HpyCH4IV	ACGT	1 cut(s)	535
HpyCH4V	TGCA	4 cut(s)	407, 548, 848, 951
HpyF10VI	GCNNNNNNNGC	6 cut(s)	197, 271, 307, 413, 422, 459
HpyF3I	CTNAG	2 cut(s)	60, 837
HpySE526I	ACGT	1 cut(s)	535
Hsp92I	GRCGYC	1 cut(s)	453
Hsp92II	CATG	7 cut(s)	44, 174, 200, 236, 452, 703, 766
HspAI	GCGC	1 cut(s)	453
KasI	GGCGCC	1 cut(s)	452
Kpn2I	TCCGGA	1 cut(s)	623
KpnI	GGTACC	1 cut(s)	786
Kzo9I	GATC	7 cut(s)	14, 472, 487, 499, 521, 850, 958
LmnI	GCTCC	4 cut(s)	157, 283, 584, 922
Lsp1109I	GCAGC	2 cut(s)	391, 781
MaeI	CTAG	4 cut(s)	6, 527, 551, 659
MaeII	ACGT	1 cut(s)	535
MaeIII	GTNAC	1 cut(s)	971
MalI	GATC	7 cut(s)	16, 474, 489, 501, 523, 852, 960
MboI	GATC	7 cut(s)	14, 472, 487, 499, 521, 850, 958
MboII	GAAGA	6 cut(s)	74, 205, 208, 279, 730, 827
MflI	RGATCY	2 cut(s)	521, 850
MluCI	AATT	8 cut(s)	372, 381, 444, 476, 600, 644, 664, 735
Mly113I	GGCGCC	1 cut(s)	453
MlyI	GAGTC	1 cut(s)	645
MmeI	TCCRAC	1 cut(s)	577
MnlI	CCTC	5 cut(s)	71, 234, 357, 387, 930
MroI	TCCGGA	1 cut(s)	623
MseI	TTAA	4 cut(s)	359, 482, 777, 912
MspI	CCGG	2 cut(s)	624, 962
MspR9I	CCNGG	2 cut(s)	141, 711
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	2 cut(s)	141, 711
MwoI	GCNNNNNNNGC	6 cut(s)	197, 271, 307, 413, 422, 459
NarI	GGCGCC	1 cut(s)	453
NdeI	CATATG	1 cut(s)	19
NdeII	GATC	7 cut(s)	14, 472, 487, 499, 521, 850, 958
NlaIII	CATG	7 cut(s)	44, 174, 200, 236, 452, 703, 766
NlaIV	GGNNCC	2 cut(s)	454, 784
NspI	RCATGY	4 cut(s)	44, 200, 236, 703
PciI	ACATGT	1 cut(s)	699
PctI	GAATGC	1 cut(s)	418
PfeI	GAWTC	3 cut(s)	620, 629, 684
PkrI	GCNGC	2 cut(s)	406, 796
PleI	GAGTC	1 cut(s)	645
PluTI	GGCGCC	1 cut(s)	456
PpsI	GAGTC	1 cut(s)	645
PscI	ACATGT	1 cut(s)	699
Psp1406I	AACGTT	1 cut(s)	535
Psp6I	CCWGG	2 cut(s)	139, 709
PspFI	CCCAGC	1 cut(s)	33
PspGI	CCWGG	2 cut(s)	139, 709
PspN4I	GGNNCC	2 cut(s)	454, 784
PsuI	RGATCY	2 cut(s)	521, 850
RsaI	GTAC	5 cut(s)	195, 692, 759, 784, 932
RsaNI	GTAC	5 cut(s)	194, 691, 758, 783, 931
SaqAI	TTAA	4 cut(s)	359, 482, 777, 912
SatI	GCNGC	2 cut(s)	405, 795
Sau3AI	GATC	7 cut(s)	14, 472, 487, 499, 521, 850, 958
SchI	GAGTC	1 cut(s)	645
ScrFI	CCNGG	2 cut(s)	141, 711
SfoI	GGCGCC	1 cut(s)	454
Sse9I	AATT	8 cut(s)	372, 381, 444, 476, 600, 644, 664, 735
SspDI	GGCGCC	1 cut(s)	452
SspMI	CTAG	4 cut(s)	6, 527, 551, 659
StyD4I	CCNGG	2 cut(s)	139, 709
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	2 cut(s)	724, 752
TaiI	ACGT	1 cut(s)	538
TaqI	TCGA	2 cut(s)	471, 502
TasI	AATT	8 cut(s)	372, 381, 444, 476, 600, 644, 664, 735
TatI	WGTACW	3 cut(s)	193, 690, 930
TfiI	GAWTC	3 cut(s)	620, 629, 684
Tru1I	TTAA	4 cut(s)	359, 482, 777, 912
Tru9I	TTAA	4 cut(s)	359, 482, 777, 912
TscAI	CASTG	2 cut(s)	106, 982
TseI	GCWGC	2 cut(s)	404, 794
TspDTI	ATGAA	4 cut(s)	384, 437, 731, 778
TspRI	CASTG	2 cut(s)	106, 982
XapI	RAATTY	2 cut(s)	372, 444
XceI	RCATGY	4 cut(s)	44, 200, 236, 703
XspI	CTAG	4 cut(s)	6, 527, 551, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.