Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Forward (+)

23598565 .. 23600676

Gene Structure 2112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCTAACCAAGCTCCCACACTTCCTCTCCTTACCCCCTACAAGTTGGGAAAGTTCGATCTTTCTCACAGAATTGTTTTAGCACCATTGACTAGATCGAGATCATACGGAAATGTTCCCCAGCCGCATGCCATCCTATATTACTCTCAGAGAACATCCAAAGGGGGTCTTCTCATAAGTGAAGCCACTGGAGTTTCAGACACAGCACAAGGGTATCCAGATACTCCTGGTATATGGACCAAGGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGCTAAAGGGGGTATCTTCATCTGTCAGATTTGGCATGTCGGGAGGGTTTCAAATAGTGGCTATCAGCCGAATGGGCAAGCTCCAGTCTCTTCTACTGACAAGCCCCTAACCCCCCAGATACGAGGTAATGGCATTGACGTTGCGCAGTTCACACCTCCAAGACGATTAAGGACAGATGAAATTCCTCAAATTGTCAATGATTTTAGACTTGCTGCAAGGAATGCAATGGAAGCTGGCTTTGATGGGGTTGAAATCCATGGCGCCCATGGCTACCTAATCGAACAATTTTTAAAAGATGAAGTAAATGATCGAACAGACCAATATGGTGGGTCTCTAGAAAACCGTTGCCGATTTGCACTAGACATTGTTGAAGCTGTTGTCAACGAGATAGGAGCAGATAAAGTTGGAATTAGATTCTCTCCATTTTCCGACTATATGGAATCCGGAGATTCTAAGCCAAAGGAGTTGGGACTTTATCTAGCCAATGCCTTAAACAAGTATGGGATCCTGTACTGCCACATGTTTGAGCCAAGAGAGAAAATTGAATGTCCCCACAGTCTTGTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTACTGGTGGTTTTGACAGGGAAGAAGGGAACAATGCTGTGGCTGAAGGCCGTGCAAATCTTATAGCTTTTGGTCGTTGGTTCTTAGCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTTTAAACAAGTACAACAGGGATACTTTCTACACATCTGATCCAGTTCTTGGTTACACTGATTATCCATTTCTCGACAGCAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

366

Amino Acids

40.53

Weight (kDa)

6.26

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	10 - 338	1.9e-85	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	429
Acc65I	GGTACC	1 cut(s)	872
AccB1I	GGYRCC	2 cut(s)	545, 872
AccB7I	CCANNNNNTGG	1 cut(s)	1058
AccIII	TCCGGA	1 cut(s)	728
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	3 cut(s)	784, 797, 1043
AcsI	RAATTY	1 cut(s)	465
AcuI	CTGAAG	1 cut(s)	948
AcyI	GRCGYC	1 cut(s)	546
AfaI	GTAC	5 cut(s)	282, 797, 849, 874, 1022
AfiI	CCNNNNNNNGG	1 cut(s)	1058
AflIII	ACRYGT	1 cut(s)	804
AgsI	TTSAA	5 cut(s)	254, 336, 536, 656, 830
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	7 cut(s)	14, 365, 518, 659, 950, 971, 1000
AluI	AGCT	7 cut(s)	14, 365, 518, 659, 950, 971, 1000
Alw26I	GTCTC	2 cut(s)	376, 621
AlwI	GGATC	3 cut(s)	784, 797, 1043
Aor13HI	TCCGGA	1 cut(s)	728
AoxI	GGCC	1 cut(s)	931
ApeKI	GCWGC	1 cut(s)	497
ApoI	RAATTY	1 cut(s)	465
Asp718I	GGTACC	1 cut(s)	872
AspLEI	GCGC	2 cut(s)	430, 548
AspS9I	GGNCC	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	237
BaeI	ACNNNNGTAYC	2 cut(s)	197, 230
BamHI	GGATCC	1 cut(s)	789
BanI	GGYRCC	2 cut(s)	545, 872
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	2 cut(s)	140, 521
BceAI	ACGGC	1 cut(s)	918
BcgI	CGANNNNNNTGC	1 cut(s)	1073
BciT130I	CCWGG	1 cut(s)	228
BciVI	GTATCC	2 cut(s)	225, 1024
BcoDI	GTCTC	2 cut(s)	376, 621
BfaI	CTAG	4 cut(s)	93, 620, 644, 764
BfoI	RGCGCY	1 cut(s)	549
BfuI	GTATCC	2 cut(s)	225, 1024
BglI	GCCNNNNNGGC	1 cut(s)	358
BisI	GCNGC	2 cut(s)	125, 498
BlsI	GCNGC	2 cut(s)	126, 499
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	3 cut(s)	547, 791, 874
BmrFI	CCNGG	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	161
BpmI	CTGGAG	2 cut(s)	210, 351
BsaBI	GATNNNNATC	1 cut(s)	100
BsaHI	GRCGYC	1 cut(s)	546
BsaI	GGTCTC	1 cut(s)	621
BsaJI	CCNNGG	3 cut(s)	240, 541, 550
BsaWI	WCCGGW	1 cut(s)	728
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	1 cut(s)	1058
Bse1I	ACTGG	4 cut(s)	193, 368, 892, 1052
Bse3DI	GCAATG	2 cut(s)	516, 879
Bse8I	GATNNNNATC	1 cut(s)	100
BseAI	TCCGGA	1 cut(s)	728
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	3 cut(s)	240, 541, 550
BseGI	GGATG	2 cut(s)	132, 155
BseJI	GATNNNNATC	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	1058
BseMI	GCAATG	2 cut(s)	516, 879
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	4 cut(s)	193, 368, 892, 1052
BseXI	GCAGC	1 cut(s)	484
BseYI	CCCAGC	1 cut(s)	120
BshFI	GGCC	1 cut(s)	933
BshNI	GGYRCC	2 cut(s)	545, 872
BsiSI	CCGG	1 cut(s)	729
BslFI	GGGAC	2 cut(s)	768, 819
BslI	CCNNNNNNNGG	1 cut(s)	1058
BsmAI	GTCTC	2 cut(s)	376, 621
BsmFI	GGGAC	2 cut(s)	768, 819
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	933
Bso31I	GGTCTC	1 cut(s)	621
Bsp13I	TCCGGA	1 cut(s)	728
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	6 cut(s)	58, 95, 101, 592, 789, 1048
Bsp19I	CCATGG	2 cut(s)	541, 550
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	1 cut(s)	933
BspCNI	CTCAG	1 cut(s)	160
BspEI	TCCGGA	1 cut(s)	728
BspLI	GGNNCC	3 cut(s)	547, 791, 874
BspPI	GGATC	3 cut(s)	784, 797, 1043
BspT107I	GGYRCC	2 cut(s)	545, 872
BspTNI	GGTCTC	1 cut(s)	621
BsrDI	GCAATG	2 cut(s)	516, 879
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	4 cut(s)	193, 368, 892, 1052
BssECI	CCNNGG	3 cut(s)	240, 541, 550
BssMI	GATC	6 cut(s)	58, 95, 101, 592, 789, 1048
BssNI	GRCGYC	1 cut(s)	546
BssT1I	CCWWGG	3 cut(s)	240, 541, 550
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	629, 842
Bst6I	CTCTTC	1 cut(s)	379
BstACI	GRCGYC	1 cut(s)	546
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstAUI	TGTACA	1 cut(s)	280
BstC8I	GCNNGC	3 cut(s)	129, 363, 520
BstDEI	CTNAG	3 cut(s)	147, 738, 967
BstDSI	CCRYGG	2 cut(s)	541, 550
BstF5I	GGATG	2 cut(s)	132, 155
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	2 cut(s)	430, 548
BstKTI	GATC	6 cut(s)	61, 98, 104, 595, 792, 1051
BstMAI	GTCTC	2 cut(s)	376, 621
BstMBI	GATC	6 cut(s)	58, 95, 101, 592, 789, 1048
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 284, 358, 506, 515, 552
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	4 cut(s)	131, 287, 323, 808
BstSCI	CCNGG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	484
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	789
BstXI	CCANNNNNNTGG	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	789
BsuI	GTATCC	2 cut(s)	225, 1024
BsuRI	GGCC	1 cut(s)	933
BtgI	CCRYGG	2 cut(s)	541, 550
BtsCI	GGATG	2 cut(s)	132, 155
BtsI	GCAGTG	1 cut(s)	1096
BtsIMutI	CAGTG	3 cut(s)	186, 1065, 1096
Cac8I	GCNNGC	3 cut(s)	129, 363, 520
CfoI	GCGC	2 cut(s)	430, 548
Cfr13I	GGNCC	1 cut(s)	237
Csp6I	GTAC	5 cut(s)	281, 796, 848, 873, 1021
CviAII	CATG	8 cut(s)	128, 258, 284, 320, 542, 551, 805, 853
CviQI	GTAC	5 cut(s)	281, 796, 848, 873, 1021
DdeI	CTNAG	3 cut(s)	147, 738, 967
DinI	GGCGCC	1 cut(s)	547
DpnI	GATC	6 cut(s)	60, 97, 103, 594, 791, 1050
DpnII	GATC	6 cut(s)	58, 95, 101, 592, 789, 1048
DraI	TTTAAA	2 cut(s)	576, 1014
Eam1104I	CTCTTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	379
Eco130I	CCWWGG	3 cut(s)	240, 541, 550
Eco31I	GGTCTC	1 cut(s)	621
Eco47I	GGWCC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	948
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	3 cut(s)	240, 541, 550
EgeI	GGCGCC	1 cut(s)	547
EheI	GGCGCC	1 cut(s)	547
ErhI	CCWWGG	3 cut(s)	240, 541, 550
FaeI	CATG	8 cut(s)	131, 261, 287, 323, 545, 554, 808, 856
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	2 cut(s)	768, 819
FatI	CATG	8 cut(s)	127, 257, 283, 319, 541, 550, 804, 852
Fnu4HI	GCNGC	2 cut(s)	125, 498
FokI	GGATG	2 cut(s)	119, 142
Fsp4HI	GCNGC	2 cut(s)	125, 498
FspBI	CTAG	4 cut(s)	93, 620, 644, 764
FspI	TGCGCA	1 cut(s)	429
GlaI	GCGC	2 cut(s)	429, 547
GluI	GCNGC	2 cut(s)	125, 498
GsaI	CCCAGC	1 cut(s)	124
GsuI	CTGGAG	2 cut(s)	210, 351
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	1 cut(s)	933
HapII	CCGG	1 cut(s)	729
HhaI	GCGC	2 cut(s)	430, 548
Hin1I	GRCGYC	1 cut(s)	546
Hin1II	CATG	8 cut(s)	131, 261, 287, 323, 545, 554, 808, 856
Hin6I	GCGC	2 cut(s)	428, 546
HinP1I	GCGC	2 cut(s)	428, 546
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HinfI	GANTC	3 cut(s)	699, 725, 734
HpaII	CCGG	1 cut(s)	729
Hpy166II	GTNNAC	2 cut(s)	435, 667
Hpy188I	TCNGA	5 cut(s)	150, 199, 312, 715, 1048
Hpy188III	TCNNGA	7 cut(s)	99, 218, 325, 620, 729, 977, 1082
Hpy8I	GTNNAC	2 cut(s)	435, 667
HpyAV	CCTTC	3 cut(s)	886, 902, 923
HpyCH4III	ACNGT	2 cut(s)	629, 842
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	4 cut(s)	500, 509, 641, 938
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 284, 358, 506, 515, 552
HpyF3I	CTNAG	3 cut(s)	147, 738, 967
HpySE526I	ACGT	1 cut(s)	423
Hsp92I	GRCGYC	1 cut(s)	546
Hsp92II	CATG	8 cut(s)	131, 261, 287, 323, 545, 554, 808, 856
HspAI	GCGC	2 cut(s)	428, 546
KasI	GGCGCC	1 cut(s)	545
Kpn2I	TCCGGA	1 cut(s)	728
KpnI	GGTACC	1 cut(s)	876
Kzo9I	GATC	6 cut(s)	58, 95, 101, 592, 789, 1048
LmnI	GCTCC	5 cut(s)	19, 244, 370, 677, 1012
Lsp1109I	GCAGC	1 cut(s)	484
MaeI	CTAG	4 cut(s)	93, 620, 644, 764
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	1061
MalI	GATC	6 cut(s)	60, 97, 103, 594, 791, 1050
MboI	GATC	6 cut(s)	58, 95, 101, 592, 789, 1048
MboII	GAAGA	4 cut(s)	161, 292, 366, 917
MflI	RGATCY	1 cut(s)	789
MluCI	AATT	6 cut(s)	72, 465, 474, 569, 693, 825
Mly113I	GGCGCC	1 cut(s)	546
MmeI	TCCRAC	2 cut(s)	670, 738
MnlI	CCTC	5 cut(s)	36, 321, 401, 450, 480
MroI	TCCGGA	1 cut(s)	728
MseI	TTAA	6 cut(s)	452, 575, 776, 867, 1002, 1013
MspI	CCGG	1 cut(s)	729
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	6 cut(s)	11, 284, 358, 506, 515, 552
NarI	GGCGCC	1 cut(s)	546
NcoI	CCATGG	2 cut(s)	541, 550
NdeII	GATC	6 cut(s)	58, 95, 101, 592, 789, 1048
NlaIII	CATG	8 cut(s)	131, 261, 287, 323, 545, 554, 808, 856
NlaIV	GGNNCC	3 cut(s)	547, 791, 874
NsbI	TGCGCA	1 cut(s)	429
NspI	RCATGY	4 cut(s)	131, 287, 323, 808
PaeI	GCATGC	1 cut(s)	131
PciI	ACATGT	1 cut(s)	804
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	3 cut(s)	699, 725, 734
PflMI	CCANNNNNTGG	1 cut(s)	1058
PkrI	GCNGC	2 cut(s)	126, 499
PluTI	GGCGCC	1 cut(s)	549
PscI	ACATGT	1 cut(s)	804
Psp6I	CCWGG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	3 cut(s)	547, 791, 874
PspPI	GGNCC	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	789
RsaI	GTAC	5 cut(s)	282, 797, 849, 874, 1022
RsaNI	GTAC	5 cut(s)	281, 796, 848, 873, 1021
SaqAI	TTAA	6 cut(s)	452, 575, 776, 867, 1002, 1013
SatI	GCNGC	2 cut(s)	125, 498
Sau3AI	GATC	6 cut(s)	58, 95, 101, 592, 789, 1048
Sau96I	GGNCC	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	228
SfoI	GGCGCC	1 cut(s)	547
SinI	GGWCC	1 cut(s)	237
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	6 cut(s)	72, 465, 474, 569, 693, 825
SsiI	CCGC	1 cut(s)	125
SspDI	GGCGCC	1 cut(s)	545
SspMI	CTAG	4 cut(s)	93, 620, 644, 764
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	3 cut(s)	240, 541, 550
TaaI	ACNGT	2 cut(s)	629, 842
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	5 cut(s)	57, 98, 564, 595, 1083
TasI	AATT	6 cut(s)	72, 465, 474, 569, 693, 825
TatI	WGTACW	3 cut(s)	280, 795, 1020
TauI	GCSGC	1 cut(s)	127
TfiI	GAWTC	3 cut(s)	699, 725, 734
Tru1I	TTAA	6 cut(s)	452, 575, 776, 867, 1002, 1013
Tru9I	TTAA	6 cut(s)	452, 575, 776, 867, 1002, 1013
TscAI	CASTG	3 cut(s)	193, 1072, 1096
TseI	GCWGC	1 cut(s)	497
TspDTI	ATGAA	4 cut(s)	292, 477, 597, 868
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	3 cut(s)	193, 1072, 1096
Van91I	CCANNNNNTGG	1 cut(s)	1058
VpaK11BI	GGWCC	1 cut(s)	237
XapI	RAATTY	1 cut(s)	465
XbaI	TCTAGA	1 cut(s)	619
XceI	RCATGY	4 cut(s)	131, 287, 323, 808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XspI	CTAG	4 cut(s)	93, 620, 644, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.