Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

16577107 .. 16581821

Gene Structure 4715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001506

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGCTCAAACTGGAATTGCAGCACCGGTTCAACGCCGGCATCCAAGAAAACTTTCCGCTCAAAGTTGTTTTAGCGCCATTGACTAGACAGAGATCATATGGAAATGTTCCCCAGCCACATGCCATCTTATATTACTCTCAGAGAACATCTAAAGGAGGTCTTCTCATAGCTGAAGCCACTGGAGTTTCTGACACAGCACAAGGGTATCCAGATACTCCTGGTATATGGACAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGCTAAAGGGGGTATCTTCTTCTGTCAGATTTGGCATGTGGGGAGGGTTTCAAATACTGGCTTTCAGCCAAATGGGCAAGCTCCAATCTCTTCTACTGACAAGCCCCTAACACCCCAAATACGAGCTAATGGCATTGATGTTGCGCAGTTTACCCCTCCAAGACAATTGAGGACAGATGAAATTCCTCAAATTGTCAATGATTTTAGACTTGCTGCAAGGAATGCTATGGAAGCTGGCTTTGATGGGGTTGAAATTCATGGCGCCCATGGCTACCTTATTGATCAGTTTTTAAAAGATCAAGTAAATGATCGAACAGACCAATATGGTGGATCTCTAGAAAATCGTTGCCGATTTGCACTAGACATTGTTGAAGCTGTTGTCAACGAGATAGGAGCAGATAAAGTTGGAATTAGATTATCTCCATTTGCCGACTATATGGAATCCGGAGATTCTAATCCAAAGGAATTGGGCCTCTATCTAGCCAATTCCTTGAACAAATATGGAATTCTGTACTGCCACATGGTTGAGCCAAGAATGAAGACAGTTGGGGAAAAAATTGAATGTCCCCACAGTCTTGTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGGGAGATGGGAACAATGCTGTGGCTGAAGGTCGTGCAGATCTTATTGCTTTTGGTCGATGGTTCTTGGCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAATAAGTACAACAGAGATACATTCTACATATCTGATCCGGTTCTTGGTTACACTGATTATCCATTTCTTGACAGCACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

368

Amino Acids

40.71

Weight (kDa)

6.09

Isoelectric Point (pI)

26.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	22 - 340	1.2e-80	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	420
Acc65I	GGTACC	1 cut(s)	878
AccB1I	GGYRCC	2 cut(s)	536, 878
AccBSI	CCGCTC	1 cut(s)	58
AccIII	TCCGGA	1 cut(s)	719
AciI	CCGC	1 cut(s)	56
AclWI	GGATC	2 cut(s)	613, 1049
AcsI	RAATTY	3 cut(s)	456, 528, 780
AcuI	CTGAAG	2 cut(s)	192, 954
AcyI	GRCGYC	1 cut(s)	537
AfaI	GTAC	5 cut(s)	273, 788, 855, 880, 1028
AfiI	CCNNNNNNNGG	1 cut(s)	1064
AgeI	ACCGGT	1 cut(s)	24
AgsI	TTSAA	7 cut(s)	31, 245, 327, 527, 647, 769, 836
AjnI	CCWGG	1 cut(s)	217
AjuI	GAANNNNNNNTTGG	2 cut(s)	36, 68
AluBI	AGCT	6 cut(s)	170, 356, 401, 509, 650, 1006
AluI	AGCT	6 cut(s)	170, 356, 401, 509, 650, 1006
AlwI	GGATC	2 cut(s)	613, 1049
Aor13HI	TCCGGA	1 cut(s)	719
AoxI	GGCC	1 cut(s)	745
ApeKI	GCWGC	3 cut(s)	19, 488, 890
ApoI	RAATTY	3 cut(s)	456, 528, 780
AsiGI	ACCGGT	1 cut(s)	24
Asp700I	GAANNNNTTC	1 cut(s)	51
Asp718I	GGTACC	1 cut(s)	878
AspLEI	GCGC	3 cut(s)	76, 421, 539
AspS9I	GGNCC	1 cut(s)	745
BaeI	ACNNNNGTAYC	2 cut(s)	188, 221
BanI	GGYRCC	2 cut(s)	536, 878
BbsI	GAAGAC	2 cut(s)	152, 821
BbvI	GCAGC	3 cut(s)	31, 475, 877
BccI	CCATC	4 cut(s)	131, 512, 908, 960
BciT130I	CCWGG	1 cut(s)	219
BciVI	GTATCC	1 cut(s)	216
BclI	TGATCA	1 cut(s)	556
BfaI	CTAG	4 cut(s)	84, 611, 635, 755
BfoI	RGCGCY	2 cut(s)	77, 540
BfuI	GTATCC	1 cut(s)	216
BglI	GCCNNNNNGGC	1 cut(s)	349
BglII	AGATCT	1 cut(s)	946
BisI	GCNGC	3 cut(s)	20, 489, 891
BlsI	GCNGC	3 cut(s)	21, 490, 892
Bme1390I	CCNGG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	745
BmiI	GGNNCC	2 cut(s)	538, 880
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	48
BpiI	GAAGAC	2 cut(s)	152, 821
BplI	GAGNNNNNCTC	2 cut(s)	147, 179
BpmI	CTGGAG	1 cut(s)	201
BsaBI	GATNNNNATC	1 cut(s)	729
BsaHI	GRCGYC	1 cut(s)	537
BsaJI	CCNNGG	1 cut(s)	541
BsaWI	WCCGGW	3 cut(s)	24, 719, 1057
Bsc4I	CCNNNNNNNGG	1 cut(s)	1064
Bse118I	RCCGGY	2 cut(s)	24, 35
Bse1I	ACTGG	3 cut(s)	15, 184, 337
Bse3DI	GCAATG	1 cut(s)	885
Bse8I	GATNNNNATC	1 cut(s)	729
BseAI	TCCGGA	1 cut(s)	719
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	1 cut(s)	39
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	1 cut(s)	1064
BseMI	GCAATG	1 cut(s)	885
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	3 cut(s)	15, 184, 337
BseRI	GAGGAG	1 cut(s)	1005
BseXI	GCAGC	3 cut(s)	31, 475, 877
BseYI	CCCAGC	1 cut(s)	111
BsgI	GTGCAG	1 cut(s)	963
BshFI	GGCC	1 cut(s)	747
BshNI	GGYRCC	2 cut(s)	536, 878
BshTI	ACCGGT	1 cut(s)	24
BsiSI	CCGG	4 cut(s)	25, 36, 720, 1058
BslFI	GGGAC	1 cut(s)	825
BslI	CCNNNNNNNGG	1 cut(s)	1064
BsmFI	GGGAC	1 cut(s)	825
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	1 cut(s)	747
Bsp13I	TCCGGA	1 cut(s)	719
Bsp1407I	TGTACA	1 cut(s)	271
Bsp143I	GATC	7 cut(s)	92, 556, 571, 583, 605, 946, 1054
Bsp19I	CCATGG	1 cut(s)	541
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	747
BspCNI	CTCAG	1 cut(s)	151
BspEI	TCCGGA	1 cut(s)	719
BspLI	GGNNCC	2 cut(s)	538, 880
BspPI	GGATC	2 cut(s)	613, 1049
BspT107I	GGYRCC	2 cut(s)	536, 878
BsrBI	CCGCTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	885
BsrFI	RCCGGY	2 cut(s)	24, 35
BsrGI	TGTACA	1 cut(s)	271
BsrI	ACTGG	3 cut(s)	15, 184, 337
BssAI	RCCGGY	2 cut(s)	24, 35
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	7 cut(s)	92, 556, 571, 583, 605, 946, 1054
BssNI	GRCGYC	1 cut(s)	537
BssT1I	CCWWGG	1 cut(s)	541
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	820, 848
Bst6I	CTCTTC	1 cut(s)	370
BstACI	GRCGYC	1 cut(s)	537
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstAUI	TGTACA	1 cut(s)	271
BstC8I	GCNNGC	3 cut(s)	37, 354, 511
BstDEI	CTNAG	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	541
BstF5I	GGATG	1 cut(s)	39
BstH2I	RGCGCY	2 cut(s)	77, 540
BstHHI	GCGC	3 cut(s)	76, 421, 539
BstKTI	GATC	7 cut(s)	95, 559, 574, 586, 608, 949, 1057
BstMBI	GATC	7 cut(s)	92, 556, 571, 583, 605, 946, 1054
BstMWI	GCNNNNNNNGC	5 cut(s)	275, 349, 497, 506, 543
BstNI	CCWGG	1 cut(s)	219
BstNSI	RCATGY	3 cut(s)	122, 278, 314
BstSCI	CCNGG	1 cut(s)	217
BstV1I	GCAGC	3 cut(s)	31, 475, 877
BstV2I	GAAGAC	2 cut(s)	152, 821
BstX2I	RGATCY	2 cut(s)	605, 946
BstXI	CCANNNNNNTGG	1 cut(s)	602
BstYI	RGATCY	2 cut(s)	605, 946
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	747
BtgI	CCRYGG	1 cut(s)	541
BtsCI	GGATG	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	1095
BtsIMutI	CAGTG	3 cut(s)	177, 1071, 1095
Cac8I	GCNNGC	3 cut(s)	37, 354, 511
CfoI	GCGC	3 cut(s)	76, 421, 539
Cfr10I	RCCGGY	2 cut(s)	24, 35
Cfr13I	GGNCC	1 cut(s)	745
Csp6I	GTAC	5 cut(s)	272, 787, 854, 879, 1027
CspAI	ACCGGT	1 cut(s)	24
CviAII	CATG	8 cut(s)	119, 249, 275, 311, 533, 542, 796, 859
CviQI	GTAC	5 cut(s)	272, 787, 854, 879, 1027
DdeI	CTNAG	1 cut(s)	138
DinI	GGCGCC	1 cut(s)	538
DpnI	GATC	7 cut(s)	94, 558, 573, 585, 607, 948, 1056
DpnII	GATC	7 cut(s)	92, 556, 571, 583, 605, 946, 1054
DraI	TTTAAA	1 cut(s)	567
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	541
Eco57I	CTGAAG	2 cut(s)	192, 954
EcoRI	GAATTC	1 cut(s)	780
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	541
EgeI	GGCGCC	1 cut(s)	538
EheI	GGCGCC	1 cut(s)	538
ErhI	CCWWGG	1 cut(s)	541
FaeI	CATG	8 cut(s)	122, 252, 278, 314, 536, 545, 799, 862
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FaqI	GGGAC	1 cut(s)	825
FatI	CATG	8 cut(s)	118, 248, 274, 310, 532, 541, 795, 858
FauNDI	CATATG	1 cut(s)	97
FbaI	TGATCA	1 cut(s)	556
Fnu4HI	GCNGC	3 cut(s)	20, 489, 891
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	3 cut(s)	20, 489, 891
FspBI	CTAG	4 cut(s)	84, 611, 635, 755
FspI	TGCGCA	1 cut(s)	420
GlaI	GCGC	3 cut(s)	75, 420, 538
GluI	GCNGC	3 cut(s)	20, 489, 891
GsaI	CCCAGC	1 cut(s)	115
GsuI	CTGGAG	1 cut(s)	201
HaeII	RGCGCY	2 cut(s)	77, 540
HaeIII	GGCC	1 cut(s)	747
HapII	CCGG	4 cut(s)	25, 36, 720, 1058
HhaI	GCGC	3 cut(s)	76, 421, 539
Hin1I	GRCGYC	1 cut(s)	537
Hin1II	CATG	8 cut(s)	122, 252, 278, 314, 536, 545, 799, 862
Hin6I	GCGC	3 cut(s)	74, 419, 537
HinP1I	GCGC	3 cut(s)	74, 419, 537
HincII	GTYRAC	1 cut(s)	658
HindII	GTYRAC	1 cut(s)	658
HinfI	GANTC	2 cut(s)	716, 725
HpaII	CCGG	4 cut(s)	25, 36, 720, 1058
Hpy166II	GTNNAC	2 cut(s)	426, 658
Hpy188I	TCNGA	4 cut(s)	141, 190, 303, 1054
Hpy188III	TCNNGA	5 cut(s)	209, 611, 720, 983, 1088
Hpy8I	GTNNAC	2 cut(s)	426, 658
HpyAV	CCTTC	2 cut(s)	892, 929
HpyCH4III	ACNGT	2 cut(s)	820, 848
HpyCH4V	TGCA	4 cut(s)	19, 491, 632, 944
HpyF10VI	GCNNNNNNNGC	5 cut(s)	275, 349, 497, 506, 543
HpyF3I	CTNAG	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	537
Hsp92II	CATG	8 cut(s)	122, 252, 278, 314, 536, 545, 799, 862
HspAI	GCGC	3 cut(s)	74, 419, 537
KasI	GGCGCC	1 cut(s)	536
Kpn2I	TCCGGA	1 cut(s)	719
KpnI	GGTACC	1 cut(s)	882
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	7 cut(s)	92, 556, 571, 583, 605, 946, 1054
LmnI	GCTCC	4 cut(s)	235, 361, 668, 1018
Lsp1109I	GCAGC	3 cut(s)	31, 475, 877
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	4 cut(s)	84, 611, 635, 755
MaeIII	GTNAC	1 cut(s)	1067
MalI	GATC	7 cut(s)	94, 558, 573, 585, 607, 948, 1056
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	7 cut(s)	92, 556, 571, 583, 605, 946, 1054
MboII	GAAGA	5 cut(s)	152, 283, 286, 357, 826
MfeI	CAATTG	1 cut(s)	440
MflI	RGATCY	2 cut(s)	605, 946
Mly113I	GGCGCC	1 cut(s)	537
MmeI	TCCRAC	1 cut(s)	661
MnlI	CCTC	7 cut(s)	149, 312, 438, 441, 471, 758, 1026
MroI	TCCGGA	1 cut(s)	719
MroNI	GCCGGC	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	3 cut(s)	566, 873, 1008
MspI	CCGG	4 cut(s)	25, 36, 720, 1058
MspR9I	CCNGG	1 cut(s)	219
MunI	CAATTG	1 cut(s)	440
Mva1269I	GAATGC	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	5 cut(s)	275, 349, 497, 506, 543
NaeI	GCCGGC	1 cut(s)	37
NarI	GGCGCC	1 cut(s)	537
NcoI	CCATGG	1 cut(s)	541
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	7 cut(s)	92, 556, 571, 583, 605, 946, 1054
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	8 cut(s)	122, 252, 278, 314, 536, 545, 799, 862
NlaIV	GGNNCC	2 cut(s)	538, 880
NsbI	TGCGCA	1 cut(s)	420
NspI	RCATGY	3 cut(s)	122, 278, 314
PctI	GAATGC	1 cut(s)	502
PdiI	GCCGGC	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	716, 725
PinAI	ACCGGT	1 cut(s)	24
PkrI	GCNGC	3 cut(s)	21, 490, 892
PluTI	GGCGCC	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	538, 880
PspPI	GGNCC	1 cut(s)	745
PsuI	RGATCY	2 cut(s)	605, 946
RsaI	GTAC	5 cut(s)	273, 788, 855, 880, 1028
RsaNI	GTAC	5 cut(s)	272, 787, 854, 879, 1027
SaqAI	TTAA	3 cut(s)	566, 873, 1008
SatI	GCNGC	3 cut(s)	20, 489, 891
Sau3AI	GATC	7 cut(s)	92, 556, 571, 583, 605, 946, 1054
Sau96I	GGNCC	1 cut(s)	745
ScrFI	CCNGG	1 cut(s)	219
SfaNI	GCATC	1 cut(s)	48
SfoI	GGCGCC	1 cut(s)	538
SsiI	CCGC	1 cut(s)	56
SspDI	GGCGCC	1 cut(s)	536
SspMI	CTAG	4 cut(s)	84, 611, 635, 755
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	541
TaaI	ACNGT	2 cut(s)	820, 848
TaqI	TCGA	2 cut(s)	586, 964
TatI	WGTACW	3 cut(s)	271, 786, 1026
TfiI	GAWTC	2 cut(s)	716, 725
Tru1I	TTAA	3 cut(s)	566, 873, 1008
Tru9I	TTAA	3 cut(s)	566, 873, 1008
TscAI	CASTG	3 cut(s)	184, 1078, 1102
TseI	GCWGC	3 cut(s)	19, 488, 890
TspDTI	ATGAA	4 cut(s)	468, 521, 827, 874
TspRI	CASTG	3 cut(s)	184, 1078, 1102
XapI	RAATTY	3 cut(s)	456, 528, 780
XbaI	TCTAGA	1 cut(s)	610
XceI	RCATGY	3 cut(s)	122, 278, 314
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	4 cut(s)	84, 611, 635, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.