Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003393.1

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

46706 .. 47980

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003393.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atggcaaactttcaaccagatgggcaagctccaatctcttctactgacaagtccctcgccccccaaataggatctaatggtattgatgttacgcaattcacacctccaagacggttaaggacggatgaaattcctcaaattgtcaatgatttcagacttgctgcaaggaatgccatggaagctggctttgatggggttgaaattcatggcgccaatggctaccttatcgatcagtttttaaaagatcaagtaaatgatcgaacagaccaatatggtggatctctagaaaagcgttgccaatttgcgttagacattgttgaagttgttgtcaacgagataggagcaggtaaagttggaattagattttctccatttgccaactatatggaatccggagattctaacccaaaggaattgggcctttatctagtcaattccttgaacaaatatggaatgctgtactgccacatggttgagccaagaatgaagacatttggagaaaaaactgactgtcccctgagtcttgtacccatgagaaaggcttttaatggtaccttcattgctgctggtggttttgacagggaagatgggaacaatgctgtggctgagggccgtgcagatcttattgcttttggtcgttggttcttggctaatccagatttgccaaagagatttgagcttaatgctcctctaaataagtacgtcagagatacattctacatatctgatcccgttcttggttacactgattatccatttcttgactgcactgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

258

Amino Acids

28.65

Weight (kDa)

4.89

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	335
Acc65I	GGTACC	1 cut(s)	551
AccB1I	GGYRCC	2 cut(s)	209, 551
AccIII	TCCGGA	1 cut(s)	392
AclWI	GGATC	3 cut(s)	79, 286, 722
AcsI	RAATTY	2 cut(s)	129, 201
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	4 cut(s)	461, 528, 553, 701
AfiI	CCNNNNNNNGG	2 cut(s)	68, 737
AgsI	TTSAA	4 cut(s)	14, 200, 320, 442
AluBI	AGCT	3 cut(s)	29, 182, 679
AluI	AGCT	3 cut(s)	29, 182, 679
AlwI	GGATC	3 cut(s)	79, 286, 722
Aor13HI	TCCGGA	1 cut(s)	392
AoxI	GGCC	2 cut(s)	418, 610
ApeKI	GCWGC	2 cut(s)	161, 563
ApoI	RAATTY	2 cut(s)	129, 201
Asp718I	GGTACC	1 cut(s)	551
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	418, 610
BanI	GGYRCC	2 cut(s)	209, 551
BbsI	GAAGAC	1 cut(s)	494
BbvCI	CCTCAGC	1 cut(s)	606
BbvI	GCAGC	2 cut(s)	148, 550
BccI	CCATC	3 cut(s)	14, 185, 581
BceAI	ACGGC	1 cut(s)	597
BfaI	CTAG	2 cut(s)	284, 428
BfoI	RGCGCY	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	335
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	2 cut(s)	162, 564
BlsI	GCNGC	2 cut(s)	163, 565
BmgT120I	GGNCC	2 cut(s)	418, 610
BmiI	GGNNCC	2 cut(s)	211, 553
BpiI	GAAGAC	1 cut(s)	494
Bpu10I	CCTNAGC	1 cut(s)	606
Bsa29I	ATCGAT	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	392
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 737
Bse3DI	GCAATG	1 cut(s)	558
BseAI	TCCGGA	1 cut(s)	392
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	2 cut(s)	68, 737
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	2 cut(s)	509, 597
BseRI	GAGGAG	1 cut(s)	678
BseXI	GCAGC	2 cut(s)	148, 550
BsgI	GTGCAG	2 cut(s)	636, 751
BshFI	GGCC	2 cut(s)	420, 612
BshNI	GGYRCC	2 cut(s)	209, 551
BshVI	ATCGAT	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	393
BslFI	GGGAC	2 cut(s)	37, 498
BslI	CCNNNNNNNGG	2 cut(s)	68, 737
BsmFI	GGGAC	2 cut(s)	37, 498
BsmI	GAATGC	2 cut(s)	175, 459
BsnI	GGCC	2 cut(s)	420, 612
Bsp13I	TCCGGA	1 cut(s)	392
Bsp143I	GATC	7 cut(s)	71, 229, 244, 256, 278, 619, 727
Bsp19I	CCATGG	1 cut(s)	174
BspANI	GGCC	2 cut(s)	420, 612
BspCNI	CTCAG	2 cut(s)	510, 598
BspDI	ATCGAT	1 cut(s)	228
BspEI	TCCGGA	1 cut(s)	392
BspLI	GGNNCC	2 cut(s)	211, 553
BspMI	ACCTGC	1 cut(s)	335
BspPI	GGATC	3 cut(s)	79, 286, 722
BspT107I	GGYRCC	2 cut(s)	209, 551
BsrDI	GCAATG	1 cut(s)	558
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	7 cut(s)	71, 229, 244, 256, 278, 619, 727
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	2 cut(s)	114, 512
Bst6I	CTCTTC	1 cut(s)	43
BstACI	GRCGYC	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	27, 184
BstDEI	CTNAG	2 cut(s)	518, 606
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	130
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	7 cut(s)	74, 232, 247, 259, 281, 622, 730
BstMBI	GATC	7 cut(s)	71, 229, 244, 256, 278, 619, 727
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 179, 216
BstV1I	GCAGC	2 cut(s)	148, 550
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	3 cut(s)	71, 278, 619
BstXI	CCANNNNNNTGG	2 cut(s)	275, 385
BstYI	RGATCY	3 cut(s)	71, 278, 619
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	420, 612
BsuTUI	ATCGAT	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	2 cut(s)	744, 768
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	2 cut(s)	27, 184
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	2 cut(s)	418, 610
ClaI	ATCGAT	1 cut(s)	228
Csp6I	GTAC	4 cut(s)	460, 527, 552, 700
CviAII	CATG	4 cut(s)	175, 206, 469, 532
CviQI	GTAC	4 cut(s)	460, 527, 552, 700
DdeI	CTNAG	2 cut(s)	518, 606
DinI	GGCGCC	1 cut(s)	211
DpnI	GATC	7 cut(s)	73, 231, 246, 258, 280, 621, 729
DpnII	GATC	7 cut(s)	71, 229, 244, 256, 278, 619, 727
DraI	TTTAAA	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	174
EgeI	GGCGCC	1 cut(s)	211
EheI	GGCGCC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	4 cut(s)	178, 209, 472, 535
FaiI	YATR	9 cut(s)	176, 207, 273, 384, 386, 450, 470, 533, 722
FaqI	GGGAC	2 cut(s)	37, 498
FatI	CATG	4 cut(s)	174, 205, 468, 531
Fnu4HI	GCNGC	2 cut(s)	162, 564
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	2 cut(s)	162, 564
FspBI	CTAG	2 cut(s)	284, 428
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	2 cut(s)	162, 564
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	420, 612
HapII	CCGG	1 cut(s)	393
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	4 cut(s)	178, 209, 472, 535
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	3 cut(s)	389, 398, 520
HpaII	CCGG	1 cut(s)	393
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	3 cut(s)	155, 707, 727
Hpy188III	TCNNGA	4 cut(s)	284, 393, 656, 761
Hpy8I	GTNNAC	1 cut(s)	331
HpyAV	CCTTC	1 cut(s)	565
HpyCH4III	ACNGT	2 cut(s)	114, 512
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	3 cut(s)	164, 617, 768
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 179, 216
HpyF3I	CTNAG	2 cut(s)	518, 606
HpySE526I	ACGT	1 cut(s)	702
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	4 cut(s)	178, 209, 472, 535
HspAI	GCGC	1 cut(s)	210
KasI	GGCGCC	1 cut(s)	209
Kpn2I	TCCGGA	1 cut(s)	392
KpnI	GGTACC	1 cut(s)	555
Kzo9I	GATC	7 cut(s)	71, 229, 244, 256, 278, 619, 727
LmnI	GCTCC	3 cut(s)	34, 341, 691
LpnPI	CCDG	8 cut(s)	30, 168, 330, 406, 530, 552, 565, 669
Lsp1109I	GCAGC	2 cut(s)	148, 550
MaeI	CTAG	2 cut(s)	284, 428
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	2 cut(s)	88, 740
MalI	GATC	7 cut(s)	73, 231, 246, 258, 280, 621, 729
MboI	GATC	7 cut(s)	71, 229, 244, 256, 278, 619, 727
MboII	GAAGA	3 cut(s)	30, 499, 596
MflI	RGATCY	3 cut(s)	71, 278, 619
MluCI	AATT	8 cut(s)	95, 129, 138, 201, 299, 357, 413, 433
Mly113I	GGCGCC	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	529
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	5 cut(s)	65, 114, 144, 601, 699
MroI	TCCGGA	1 cut(s)	392
MseI	TTAA	4 cut(s)	116, 239, 546, 681
MspI	CCGG	1 cut(s)	393
Mva1269I	GAATGC	2 cut(s)	175, 459
MwoI	GCNNNNNNNGC	3 cut(s)	170, 179, 216
NarI	GGCGCC	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	7 cut(s)	71, 229, 244, 256, 278, 619, 727
NlaIII	CATG	4 cut(s)	178, 209, 472, 535
NlaIV	GGNNCC	2 cut(s)	211, 553
PctI	GAATGC	2 cut(s)	175, 459
PfeI	GAWTC	2 cut(s)	389, 398
PkrI	GCNGC	2 cut(s)	163, 565
PleI	GAGTC	1 cut(s)	528
PluTI	GGCGCC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	528
PspN4I	GGNNCC	2 cut(s)	211, 553
PspPI	GGNCC	2 cut(s)	418, 610
PsuI	RGATCY	3 cut(s)	71, 278, 619
RsaI	GTAC	4 cut(s)	461, 528, 553, 701
RsaNI	GTAC	4 cut(s)	460, 527, 552, 700
SaqAI	TTAA	4 cut(s)	116, 239, 546, 681
SatI	GCNGC	2 cut(s)	162, 564
Sau3AI	GATC	7 cut(s)	71, 229, 244, 256, 278, 619, 727
Sau96I	GGNCC	2 cut(s)	418, 610
SchI	GAGTC	1 cut(s)	529
SetI	ASST	8 cut(s)	31, 106, 184, 225, 349, 557, 681, 705
SfoI	GGCGCC	1 cut(s)	211
Sse9I	AATT	8 cut(s)	95, 129, 138, 201, 299, 357, 413, 433
SspDI	GGCGCC	1 cut(s)	209
SspMI	CTAG	2 cut(s)	284, 428
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	2 cut(s)	114, 512
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	2 cut(s)	228, 259
TasI	AATT	8 cut(s)	95, 129, 138, 201, 299, 357, 413, 433
TatI	WGTACW	1 cut(s)	459
TfiI	GAWTC	2 cut(s)	389, 398
Tru1I	TTAA	4 cut(s)	116, 239, 546, 681
Tru9I	TTAA	4 cut(s)	116, 239, 546, 681
TscAI	CASTG	2 cut(s)	751, 775
TseI	GCWGC	2 cut(s)	161, 563
TspDTI	ATGAA	4 cut(s)	141, 194, 500, 547
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	2 cut(s)	751, 775
XapI	RAATTY	2 cut(s)	129, 201
XbaI	TCTAGA	1 cut(s)	283
XspI	CTAG	2 cut(s)	284, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.