Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Forward (+)

23553143 .. 23555633

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCTAACCAAGCTCCCACACTTCCTCTTCTTACTCCTTACAGGTCGGGAAAGTTTGATCTTTCTCACAGAGTTGTTTTAGCACCATTGACTAGATCGAGATCATACGGAAATGTTCCCCAGCCGCATGCCATCTTATATTACTCTCAGAGAGCATCCAAAGGGGGTCTTCTCATAAGTGAAGCCACTGGAGTTTCAGACACAGCACAAGGGTATACAGATACTCCTGGTATATGGACCAAGGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGCCAAAGGGGGTTTCTTCATCTGTCAAATTGTGCACGTCGGGAGGGTTTCAAATAGTGGCTTTCAGCCAAATGGGCAATCTCCAATCTCTTCTACTGACAAGCCCCTACAACCACAAATAGGATCTAGTGGAATTGACGTTGAGGAATTCACACCTCCAAGACGATTAAGGGCAGATGAAATTCCTCAAATCGTCAATGATTTTAGACTTGCTGCAAGGAATGCGATGGAAGCTGGCTTTGATGGAGTTGAAATTCATGGCGCCCATGGCTACCTAATCGATCAGTTTTTAAAAGATCAAGTAAATGATCGAACAGACCAATACGGTGGATCTCTAGAAAACCGTTGCCGATTTGCACTAGACATTGTTGAAGCTCTTGTCAACGAGATAGGAGCAGCCAAAGTTGGAATCAGATTATCTCCATTTGCCGACTATATGGAATCCGGAGATTCTAATCCAAAGGAGTTGGGACTTTATCTAGCCAATGCCTTAAACATGTATGGGATCCTGTACTGCCACATGATTGAGCCAAGAATGAAGACGGTTGGAGAAAAATGTGAATGTCCCCACAGTCTCGTACCCATGAGAAAGGCTTTCAATGGTACCTTCATTGCTGCTGGTGGTTTTGACATGGAAGATGGGAATAATGCTGTAGCTGAGGACCGTGCAGATCTTATTGCTTTTGGTCGTTGGTTCTTGGCTAATCCGGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAATAAGTACATCAGAGATACTTTCTACACATCTGATCCGGTTCTTGGTTACACTGATTATCCATTTCTTGACAGCACCACTCGCGTTTCGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

375

Amino Acids

41.25

Weight (kDa)

5.67

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	10 - 343	5.1e-83	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	887
AccB1I	GGYRCC	2 cut(s)	545, 887
AccI	GTMKAC	1 cut(s)	215
AccII	CGCG	1 cut(s)	1113
AccIII	TCCGGA	2 cut(s)	728, 991
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	5 cut(s)	415, 622, 784, 797, 1058
AcsI	RAATTY	3 cut(s)	431, 465, 537
AcyI	GRCGYC	1 cut(s)	546
AfaI	GTAC	5 cut(s)	282, 797, 864, 889, 1037
AfiI	CCNNNNNNNGG	2 cut(s)	404, 1073
AflIII	ACRYGT	1 cut(s)	780
AgsI	TTSAA	5 cut(s)	254, 336, 536, 656, 883
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AluBI	AGCT	6 cut(s)	14, 518, 659, 941, 1015, 1122
AluI	AGCT	6 cut(s)	14, 518, 659, 941, 1015, 1122
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	863
Alw44I	GTGCAC	1 cut(s)	317
AlwI	GGATC	5 cut(s)	415, 622, 784, 797, 1058
Aor13HI	TCCGGA	2 cut(s)	728, 991
ApaLI	GTGCAC	1 cut(s)	317
ApeKI	GCWGC	3 cut(s)	497, 680, 899
ApoI	RAATTY	3 cut(s)	431, 465, 537
Asp718I	GGTACC	1 cut(s)	887
AspLEI	GCGC	1 cut(s)	548
AspS9I	GGNCC	2 cut(s)	237, 946
AvaII	GGWCC	2 cut(s)	237, 946
BaeGI	GKGCMC	1 cut(s)	321
BamHI	GGATCC	1 cut(s)	789
BanI	GGYRCC	2 cut(s)	545, 887
BbsI	GAAGAC	2 cut(s)	161, 830
Bbv12I	GWGCWC	1 cut(s)	321
BbvCI	CCTCAGC	1 cut(s)	942
BbvI	GCAGC	3 cut(s)	484, 692, 886
BccI	CCATC	4 cut(s)	140, 505, 521, 917
BciT130I	CCWGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	863
BfaI	CTAG	5 cut(s)	93, 411, 620, 644, 764
BfmI	CTRYAG	1 cut(s)	936
BfoI	RGCGCY	1 cut(s)	549
BglI	GCCNNNNNGGC	1 cut(s)	358
BglII	AGATCT	1 cut(s)	955
BisI	GCNGC	4 cut(s)	125, 498, 681, 900
BlsI	GCNGC	4 cut(s)	126, 499, 682, 901
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	2 cut(s)	237, 946
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	237, 946
BmiI	GGNNCC	3 cut(s)	547, 791, 889
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	164
BpiI	GAAGAC	2 cut(s)	161, 830
BpmI	CTGGAG	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	942
Bsa29I	ATCGAT	1 cut(s)	564
BsaBI	GATNNNNATC	2 cut(s)	100, 738
BsaHI	GRCGYC	1 cut(s)	546
BsaJI	CCNNGG	2 cut(s)	240, 550
BsaWI	WCCGGW	3 cut(s)	728, 991, 1066
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 1073
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	894
Bse8I	GATNNNNATC	2 cut(s)	100, 738
BseAI	TCCGGA	2 cut(s)	728, 991
BseBI	CCWGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	564
BseDI	CCNNGG	2 cut(s)	240, 550
BseGI	GGATG	1 cut(s)	155
BseJI	GATNNNNATC	2 cut(s)	100, 738
BseLI	CCNNNNNNNGG	2 cut(s)	404, 1073
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	2 cut(s)	161, 933
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	1014
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	3 cut(s)	484, 692, 886
BseYI	CCCAGC	1 cut(s)	120
BsgI	GTGCAG	1 cut(s)	972
Bsh1236I	CGCG	1 cut(s)	1113
BshNI	GGYRCC	2 cut(s)	545, 887
BshVI	ATCGAT	1 cut(s)	564
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	3 cut(s)	729, 992, 1067
BslFI	GGGAC	2 cut(s)	768, 834
BslI	CCNNNNNNNGG	2 cut(s)	404, 1073
BsmAI	GTCTC	1 cut(s)	863
BsmFI	GGGAC	2 cut(s)	768, 834
BsmI	GAATGC	1 cut(s)	511
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp13I	TCCGGA	2 cut(s)	728, 991
Bsp1407I	TGTACA	1 cut(s)	280
Bsp19I	CCATGG	1 cut(s)	550
BspACI	CCGC	1 cut(s)	125
BspCNI	CTCAG	2 cut(s)	160, 934
BspDI	ATCGAT	1 cut(s)	564
BspEI	TCCGGA	2 cut(s)	728, 991
BspFNI	CGCG	1 cut(s)	1113
BspLI	GGNNCC	3 cut(s)	547, 791, 889
BspPI	GGATC	5 cut(s)	415, 622, 784, 797, 1058
BspT107I	GGYRCC	2 cut(s)	545, 887
BsrDI	GCAATG	1 cut(s)	894
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	240, 550
BssNAI	GTATAC	1 cut(s)	216
BssNI	GRCGYC	1 cut(s)	546
BssT1I	CCWWGG	2 cut(s)	240, 550
Bst1107I	GTATAC	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	5 cut(s)	611, 629, 829, 857, 950
Bst6I	CTCTTC	2 cut(s)	33, 379
BstACI	GRCGYC	1 cut(s)	546
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstAUI	TGTACA	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	129, 520
BstDEI	CTNAG	2 cut(s)	147, 942
BstDSI	CCRYGG	1 cut(s)	550
BstF5I	GGATG	1 cut(s)	155
BstFNI	CGCG	1 cut(s)	1113
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	548
BstMAI	GTCTC	1 cut(s)	863
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 284, 358, 506, 515, 552, 1110, 1119
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	3 cut(s)	131, 287, 784
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	936
BstSLI	GKGCMC	1 cut(s)	321
BstUI	CGCG	1 cut(s)	1113
BstV1I	GCAGC	3 cut(s)	484, 692, 886
BstV2I	GAAGAC	2 cut(s)	161, 830
BstX2I	RGATCY	4 cut(s)	407, 614, 789, 955
BstXI	CCANNNNNNTGG	1 cut(s)	611
BstYI	RGATCY	4 cut(s)	407, 614, 789, 955
BstZ17I	GTATAC	1 cut(s)	216
Bsu15I	ATCGAT	1 cut(s)	564
BsuTUI	ATCGAT	1 cut(s)	564
BtgI	CCRYGG	1 cut(s)	550
BtgZI	GCGATG	1 cut(s)	524
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	186, 1080
Cac8I	GCNNGC	2 cut(s)	129, 520
CfoI	GCGC	1 cut(s)	548
Cfr13I	GGNCC	2 cut(s)	237, 946
ClaI	ATCGAT	1 cut(s)	564
Csp6I	GTAC	5 cut(s)	281, 796, 863, 888, 1036
CviAII	CATG	9 cut(s)	128, 258, 284, 542, 551, 781, 805, 868, 916
CviQI	GTAC	5 cut(s)	281, 796, 863, 888, 1036
DdeI	CTNAG	2 cut(s)	147, 942
DinI	GGCGCC	1 cut(s)	547
DraI	TTTAAA	1 cut(s)	576
Eam1104I	CTCTTC	2 cut(s)	33, 379
EarI	CTCTTC	2 cut(s)	33, 379
Eco130I	CCWWGG	2 cut(s)	240, 550
Eco47I	GGWCC	2 cut(s)	237, 946
EcoRI	GAATTC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	2 cut(s)	240, 550
EgeI	GGCGCC	1 cut(s)	547
EheI	GGCGCC	1 cut(s)	547
ErhI	CCWWGG	2 cut(s)	240, 550
FaeI	CATG	9 cut(s)	131, 261, 287, 545, 554, 784, 808, 871, 919
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	2 cut(s)	768, 834
FatI	CATG	9 cut(s)	127, 257, 283, 541, 550, 780, 804, 867, 915
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	4 cut(s)	125, 498, 681, 900
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	4 cut(s)	125, 498, 681, 900
FspBI	CTAG	5 cut(s)	93, 411, 620, 644, 764
GlaI	GCGC	1 cut(s)	547
GluI	GCNGC	4 cut(s)	125, 498, 681, 900
GsaI	CCCAGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	549
HapII	CCGG	3 cut(s)	729, 992, 1067
HhaI	GCGC	1 cut(s)	548
Hin1I	GRCGYC	1 cut(s)	546
Hin1II	CATG	9 cut(s)	131, 261, 287, 545, 554, 784, 808, 871, 919
Hin6I	GCGC	1 cut(s)	546
HinP1I	GCGC	1 cut(s)	546
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HinfI	GANTC	3 cut(s)	693, 725, 734
HpaII	CCGG	3 cut(s)	729, 992, 1067
Hpy166II	GTNNAC	3 cut(s)	216, 319, 667
Hpy188I	TCNGA	5 cut(s)	150, 199, 698, 1043, 1063
Hpy188III	TCNNGA	7 cut(s)	48, 99, 325, 620, 729, 992, 1097
Hpy8I	GTNNAC	3 cut(s)	216, 319, 667
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	1 cut(s)	901
HpyCH4III	ACNGT	5 cut(s)	611, 629, 829, 857, 950
HpyCH4IV	ACGT	2 cut(s)	321, 423
HpyCH4V	TGCA	4 cut(s)	319, 500, 641, 953
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 284, 358, 506, 515, 552, 1110, 1119
HpyF3I	CTNAG	2 cut(s)	147, 942
HpySE526I	ACGT	2 cut(s)	321, 423
Hsp92I	GRCGYC	1 cut(s)	546
Hsp92II	CATG	9 cut(s)	131, 261, 287, 545, 554, 784, 808, 871, 919
HspAI	GCGC	1 cut(s)	546
KasI	GGCGCC	1 cut(s)	545
Kpn2I	TCCGGA	2 cut(s)	728, 991
KpnI	GGTACC	1 cut(s)	891
LmnI	GCTCC	4 cut(s)	19, 244, 677, 1027
Lsp1109I	GCAGC	3 cut(s)	484, 692, 886
LweI	GCATC	1 cut(s)	164
MaeI	CTAG	5 cut(s)	93, 411, 620, 644, 764
MaeII	ACGT	2 cut(s)	321, 423
MaeIII	GTNAC	1 cut(s)	1076
MboII	GAAGA	6 cut(s)	20, 161, 292, 366, 835, 932
MflI	RGATCY	4 cut(s)	407, 614, 789, 955
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	5 cut(s)	312, 417, 431, 465, 537
Mly113I	GGCGCC	1 cut(s)	546
MmeI	TCCRAC	2 cut(s)	670, 811
MnlI	CCTC	7 cut(s)	36, 321, 421, 450, 480, 937, 1035
MroI	TCCGGA	2 cut(s)	728, 991
MseI	TTAA	4 cut(s)	452, 575, 776, 1017
MspI	CCGG	3 cut(s)	729, 992, 1067
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	1113
MwoI	GCNNNNNNNGC	8 cut(s)	11, 284, 358, 506, 515, 552, 1110, 1119
NarI	GGCGCC	1 cut(s)	546
NcoI	CCATGG	1 cut(s)	550
NlaIII	CATG	9 cut(s)	131, 261, 287, 545, 554, 784, 808, 871, 919
NlaIV	GGNNCC	3 cut(s)	547, 791, 889
NspI	RCATGY	3 cut(s)	131, 287, 784
PaeI	GCATGC	1 cut(s)	131
PciI	ACATGT	1 cut(s)	780
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	3 cut(s)	693, 725, 734
PkrI	GCNGC	4 cut(s)	126, 499, 682, 901
PluTI	GGCGCC	1 cut(s)	549
PscI	ACATGT	1 cut(s)	780
Psp6I	CCWGG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	3 cut(s)	547, 791, 889
PspPI	GGNCC	2 cut(s)	237, 946
PsuI	RGATCY	4 cut(s)	407, 614, 789, 955
RsaI	GTAC	5 cut(s)	282, 797, 864, 889, 1037
RsaNI	GTAC	5 cut(s)	281, 796, 863, 888, 1036
SaqAI	TTAA	4 cut(s)	452, 575, 776, 1017
SatI	GCNGC	4 cut(s)	125, 498, 681, 900
Sau96I	GGNCC	2 cut(s)	237, 946
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	321
SfaNI	GCATC	1 cut(s)	164
SfcI	CTRYAG	1 cut(s)	936
SfoI	GGCGCC	1 cut(s)	547
SinI	GGWCC	2 cut(s)	237, 946
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	5 cut(s)	312, 417, 431, 465, 537
SsiI	CCGC	1 cut(s)	125
SspDI	GGCGCC	1 cut(s)	545
SspMI	CTAG	5 cut(s)	93, 411, 620, 644, 764
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	2 cut(s)	240, 550
TaaI	ACNGT	5 cut(s)	611, 629, 829, 857, 950
TaiI	ACGT	2 cut(s)	324, 426
TaqI	TCGA	4 cut(s)	98, 564, 595, 1118
TasI	AATT	5 cut(s)	312, 417, 431, 465, 537
TatI	WGTACW	3 cut(s)	280, 795, 1035
TauI	GCSGC	1 cut(s)	127
TfiI	GAWTC	3 cut(s)	693, 725, 734
Tru1I	TTAA	4 cut(s)	452, 575, 776, 1017
Tru9I	TTAA	4 cut(s)	452, 575, 776, 1017
TscAI	CASTG	2 cut(s)	193, 1087
TseI	GCWGC	3 cut(s)	497, 680, 899
TspDTI	ATGAA	5 cut(s)	292, 477, 530, 836, 883
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	2 cut(s)	193, 1087
VneI	GTGCAC	1 cut(s)	317
VpaK11BI	GGWCC	2 cut(s)	237, 946
XapI	RAATTY	3 cut(s)	431, 465, 537
XbaI	TCTAGA	1 cut(s)	619
XceI	RCATGY	3 cut(s)	131, 287, 784
XmiI	GTMKAC	1 cut(s)	215
XspI	CTAG	5 cut(s)	93, 411, 620, 644, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.