Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

44894235 .. 44897549

Gene Structure 3315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G549100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCTGCTCAAGGTCCCTCAAGTCCTCTCCTCACTCCTTATAAAATGGGAAAGTTCAATCTTTCTCATAGAGTTGTTTTAGCACCATTGACTAGACAAAGATCATACGGAAATGTTCCTCAGCCACATGCCATCTTATATTACTCTCAGAGAACATCTAATGGGGGTCTTCTCATAGCTGAAGCCACTGGAGTTTCTGACACAGCTCAAGGGTACCCAGATACTCCTGGTATATGGACTAAGGAGCAAGTGGAAGCATGGAAACCGATTGTTGATGCGGTTCACGCTAAAGGCGGTGTCTTCTTCTGTCAGATTTGGCATGTGGGAAGGGTTTCAAATAGTGGTTATCAGCCAAATGGGCAAGCTCCAATCTCTTCTTCTGACAAGCCACTGACCCCACAACTACGATCTAATGGTATTGATGTTGCTGAGTTTACACCTCCAAGGCGATTAAGGACAGATGAAATCCCACAAATTGTCAATGATTTTAGACTCGCTGCAAGGAATGCTATCGAAGCTGGCTTTGATGGAGTGGAAATTCATGGGGCCCATGGCTACCTTCTTGATCAGTTTATGAAAGATCAAGTGAATGATCGAACAGACGAATATGGTGGATCTTTGGAGAATCGTTGCCGATTTGCTCTGGAAGTCGTTGAAGCTGTTGCTAATGAGATAGGAGCAGATAAAGTTGGAATTAGATTATCTCCATTTGCCAACTATATGGAATCAGGGGATTCAGATCCGAAAGCATTAGGCCTTTATATGGCCAATTCCTTGAATAAATATGGAATTCTGTACTGCCATATGGTTGAGCCGAGAATGAGGACAGTTGGAGAAAAATGTGCATGCCCCCACAGTCTTGTACCCATGAGAAAGGCTTTCAATGGTACCTTCATTGCTGCAGGTGGTTTTGACAGGGAAGATGGGAACAACGCTGTGGCTGAGGGTCGTGCAGATCTTATCGCCTTTGGTCGTTGGTTCTTGGCTAATCCAGATTTACCAAAGAGATTTGAGCTTAATGCTCCTCTGAATAAGTACAACAGAGAGACCTTCTATGTATCTGATCCAGTTATTGGCTACACTGATTATCCGTTCCTTGAAACCACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

371

Amino Acids

40.81

Weight (kDa)

6.09

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	42
AarI	CACCTGC	1 cut(s)	893
Acc36I	ACCTGC	1 cut(s)	893
Acc65I	GGTACC	2 cut(s)	213, 887
AccB1I	GGYRCC	2 cut(s)	213, 887
AccB7I	CCANNNNNTGG	1 cut(s)	1073
AciI	CCGC	2 cut(s)	278, 294
AclWI	GGATC	3 cut(s)	622, 734, 1058
AcoI	YGGCCR	1 cut(s)	765
AcsI	RAATTY	2 cut(s)	537, 789
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	5 cut(s)	215, 797, 864, 889, 1037
AfiI	CCNNNNNNNGG	2 cut(s)	763, 1073
AgsI	TTSAA	6 cut(s)	58, 336, 656, 778, 883, 1100
AjnI	CCWGG	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	361, 393
AluBI	AGCT	6 cut(s)	179, 206, 365, 518, 659, 1015
AluI	AGCT	6 cut(s)	179, 206, 365, 518, 659, 1015
Alw26I	GTCTC	1 cut(s)	1040
AlwI	GGATC	3 cut(s)	622, 734, 1058
AoxI	GGCC	3 cut(s)	546, 754, 765
ApaI	GGGCCC	1 cut(s)	550
ApeKI	GCWGC	3 cut(s)	5, 497, 899
ApoI	RAATTY	2 cut(s)	537, 789
Asp700I	GAANNNNTTC	1 cut(s)	331
Asp718I	GGTACC	2 cut(s)	213, 887
AspS9I	GGNCC	3 cut(s)	14, 546, 547
AvaII	GGWCC	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	550
BalI	TGGCCA	1 cut(s)	767
BanI	GGYRCC	2 cut(s)	213, 887
BanII	GRGCYC	1 cut(s)	550
BbsI	GAAGAC	2 cut(s)	161, 292
BbvCI	CCTCAGC	2 cut(s)	120, 942
BbvI	GCAGC	2 cut(s)	484, 886
BccI	CCATC	3 cut(s)	140, 521, 917
BciT130I	CCWGG	1 cut(s)	228
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	1040
BfaI	CTAG	1 cut(s)	93
BfmI	CTRYAG	1 cut(s)	900
BfuAI	ACCTGC	1 cut(s)	893
BglI	GCCNNNNNGGC	1 cut(s)	358
BglII	AGATCT	1 cut(s)	955
BisI	GCNGC	3 cut(s)	6, 498, 900
BlsI	GCNGC	3 cut(s)	7, 499, 901
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	3 cut(s)	14, 546, 547
BmiI	GGNNCC	5 cut(s)	16, 215, 547, 548, 889
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	2 cut(s)	161, 292
BpmI	CTGGAG	1 cut(s)	210
Bpu10I	CCTNAGC	2 cut(s)	120, 942
BpuEI	CTTGAG	2 cut(s)	4, 192
BsaBI	GATNNNNATC	1 cut(s)	738
BsaI	GGTCTC	1 cut(s)	1040
BsaJI	CCNNGG	2 cut(s)	443, 550
Bsc4I	CCNNNNNNNGG	2 cut(s)	763, 1073
Bse1I	ACTGG	2 cut(s)	193, 1067
Bse3DI	GCAATG	1 cut(s)	894
Bse8I	GATNNNNATC	1 cut(s)	738
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	443, 550
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	2 cut(s)	763, 1073
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	4 cut(s)	134, 161, 420, 933
BseNI	ACTGG	2 cut(s)	193, 1067
BseRI	GAGGAG	2 cut(s)	20, 1014
BseSI	GKGCMC	1 cut(s)	550
BseXI	GCAGC	2 cut(s)	484, 886
BsgI	GTGCAG	1 cut(s)	972
BshFI	GGCC	3 cut(s)	548, 756, 767
BshNI	GGYRCC	2 cut(s)	213, 887
BslI	CCNNNNNNNGG	2 cut(s)	763, 1073
BsmAI	GTCTC	1 cut(s)	1040
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	3 cut(s)	548, 756, 767
Bso31I	GGTCTC	1 cut(s)	1040
Bsp120I	GGGCCC	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	9 cut(s)	101, 407, 565, 580, 592, 614, 739, 955, 1063
Bsp19I	CCATGG	1 cut(s)	550
BspACI	CCGC	2 cut(s)	278, 294
BspANI	GGCC	3 cut(s)	548, 756, 767
BspCNI	CTCAG	4 cut(s)	133, 160, 421, 934
BspLI	GGNNCC	5 cut(s)	16, 215, 547, 548, 889
BspMAI	CTGCAG	1 cut(s)	904
BspMI	ACCTGC	1 cut(s)	893
BspPI	GGATC	3 cut(s)	622, 734, 1058
BspT107I	GGYRCC	2 cut(s)	213, 887
BspTNI	GGTCTC	1 cut(s)	1040
BsrDI	GCAATG	1 cut(s)	894
BsrI	ACTGG	2 cut(s)	193, 1067
BssECI	CCNNGG	2 cut(s)	443, 550
BssMI	GATC	9 cut(s)	101, 407, 565, 580, 592, 614, 739, 955, 1063
BssT1I	CCWWGG	2 cut(s)	443, 550
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	829, 857
Bst6I	CTCTTC	1 cut(s)	379
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstC8I	GCNNGC	3 cut(s)	363, 520, 847
BstDEI	CTNAG	5 cut(s)	120, 147, 240, 429, 942
BstDSI	CCRYGG	1 cut(s)	550
BstKTI	GATC	9 cut(s)	104, 410, 568, 583, 595, 617, 742, 958, 1066
BstMAI	GTCTC	1 cut(s)	1040
BstMBI	GATC	9 cut(s)	101, 407, 565, 580, 592, 614, 739, 955, 1063
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 358, 506, 515
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	3 cut(s)	131, 323, 849
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	900
BstSLI	GKGCMC	1 cut(s)	550
BstV1I	GCAGC	2 cut(s)	484, 886
BstV2I	GAAGAC	2 cut(s)	161, 292
BstX2I	RGATCY	3 cut(s)	614, 739, 955
BstXI	CCANNNNNNTGG	1 cut(s)	721
BstYI	RGATCY	3 cut(s)	614, 739, 955
BsuRI	GGCC	3 cut(s)	548, 756, 767
BtgI	CCRYGG	1 cut(s)	550
BtsI	GCAGTG	1 cut(s)	1104
BtsIMutI	CAGTG	4 cut(s)	186, 389, 1080, 1104
BveI	ACCTGC	1 cut(s)	893
Cac8I	GCNNGC	3 cut(s)	363, 520, 847
Cfr13I	GGNCC	3 cut(s)	14, 546, 547
Csp6I	GTAC	5 cut(s)	214, 796, 863, 888, 1036
CviAII	CATG	7 cut(s)	128, 258, 320, 542, 551, 846, 868
CviQI	GTAC	5 cut(s)	214, 796, 863, 888, 1036
DdeI	CTNAG	5 cut(s)	120, 147, 240, 429, 942
DpnI	GATC	9 cut(s)	103, 409, 567, 582, 594, 616, 741, 957, 1065
DpnII	GATC	9 cut(s)	101, 407, 565, 580, 592, 614, 739, 955, 1063
EaeI	YGGCCR	1 cut(s)	765
Eam1104I	CTCTTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	379
Eco130I	CCWWGG	2 cut(s)	443, 550
Eco147I	AGGCCT	1 cut(s)	756
Eco24I	GRGCYC	1 cut(s)	550
Eco31I	GGTCTC	1 cut(s)	1040
Eco47I	GGWCC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	201
EcoO109I	RGGNCCY	2 cut(s)	14, 546
EcoRI	GAATTC	1 cut(s)	789
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	2 cut(s)	443, 550
EcoT38I	GRGCYC	1 cut(s)	550
ErhI	CCWWGG	2 cut(s)	443, 550
FaeI	CATG	7 cut(s)	131, 261, 323, 545, 554, 849, 871
FatI	CATG	7 cut(s)	127, 257, 319, 541, 550, 845, 867
FauNDI	CATATG	1 cut(s)	804
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	3 cut(s)	6, 498, 900
FriOI	GRGCYC	1 cut(s)	550
Fsp4HI	GCNGC	3 cut(s)	6, 498, 900
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	3 cut(s)	6, 498, 900
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	548, 756, 767
Hin1II	CATG	7 cut(s)	131, 261, 323, 545, 554, 849, 871
HinfI	GANTC	4 cut(s)	492, 625, 725, 734
Hpy166II	GTNNAC	2 cut(s)	283, 435
Hpy188I	TCNGA	8 cut(s)	150, 199, 312, 382, 739, 744, 1029, 1063
Hpy188III	TCNNGA	3 cut(s)	563, 644, 992
Hpy8I	GTNNAC	2 cut(s)	283, 435
HpyAV	CCTTC	4 cut(s)	321, 569, 901, 1060
HpyCH4III	ACNGT	2 cut(s)	829, 857
HpyCH4V	TGCA	4 cut(s)	500, 845, 902, 953
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 358, 506, 515
HpyF3I	CTNAG	5 cut(s)	120, 147, 240, 429, 942
Hsp92II	CATG	7 cut(s)	131, 261, 323, 545, 554, 849, 871
KpnI	GGTACC	2 cut(s)	217, 891
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	9 cut(s)	101, 407, 565, 580, 592, 614, 739, 955, 1063
LmnI	GCTCC	4 cut(s)	244, 370, 677, 1027
Lsp1109I	GCAGC	2 cut(s)	484, 886
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	93
MalI	GATC	9 cut(s)	103, 409, 567, 582, 594, 616, 741, 957, 1065
MboI	GATC	9 cut(s)	101, 407, 565, 580, 592, 614, 739, 955, 1063
MboII	GAAGA	6 cut(s)	161, 292, 295, 366, 369, 932
MflI	RGATCY	3 cut(s)	614, 739, 955
MhlI	GDGCHC	1 cut(s)	550
MlsI	TGGCCA	1 cut(s)	767
MluCI	AATT	5 cut(s)	474, 537, 693, 769, 789
MluNI	TGGCCA	1 cut(s)	767
MlyI	GAGTC	1 cut(s)	486
MmeI	TCCRAC	2 cut(s)	670, 811
MnlI	CCTC	8 cut(s)	28, 36, 41, 129, 450, 816, 937, 1035
Mox20I	TGGCCA	1 cut(s)	767
MroXI	GAANNNNTTC	1 cut(s)	331
MscI	TGGCCA	1 cut(s)	767
MseI	TTAA	3 cut(s)	452, 1017, 1111
Msp20I	TGGCCA	1 cut(s)	767
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	4 cut(s)	284, 358, 506, 515
NcoI	CCATGG	1 cut(s)	550
NdeI	CATATG	1 cut(s)	804
NdeII	GATC	9 cut(s)	101, 407, 565, 580, 592, 614, 739, 955, 1063
NlaIII	CATG	7 cut(s)	131, 261, 323, 545, 554, 849, 871
NlaIV	GGNNCC	5 cut(s)	16, 215, 547, 548, 889
NmeAIII	GCCGAG	1 cut(s)	840
NspI	RCATGY	3 cut(s)	131, 323, 849
PaeI	GCATGC	1 cut(s)	849
PaqCI	CACCTGC	1 cut(s)	893
PceI	AGGCCT	1 cut(s)	756
PctI	GAATGC	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	331
PfeI	GAWTC	3 cut(s)	625, 725, 734
PflMI	CCANNNNNTGG	1 cut(s)	1073
PkrI	GCNGC	3 cut(s)	7, 499, 901
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
PpuMI	RGGWCCY	1 cut(s)	14
PsiI	TTATAA	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	5 cut(s)	16, 215, 547, 548, 889
PspOMI	GGGCCC	1 cut(s)	546
PspPI	GGNCC	3 cut(s)	14, 546, 547
PspPPI	RGGWCCY	1 cut(s)	14
PstI	CTGCAG	1 cut(s)	904
PsuI	RGATCY	3 cut(s)	614, 739, 955
RsaI	GTAC	5 cut(s)	215, 797, 864, 889, 1037
RsaNI	GTAC	5 cut(s)	214, 796, 863, 888, 1036
SaqAI	TTAA	3 cut(s)	452, 1017, 1111
SatI	GCNGC	3 cut(s)	6, 498, 900
Sau3AI	GATC	9 cut(s)	101, 407, 565, 580, 592, 614, 739, 955, 1063
Sau96I	GGNCC	3 cut(s)	14, 546, 547
SchI	GAGTC	1 cut(s)	486
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	550
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	900
SinI	GGWCC	1 cut(s)	14
SmlI	CTYRAG	3 cut(s)	9, 19, 207
SmoI	CTYRAG	3 cut(s)	9, 19, 207
SphI	GCATGC	1 cut(s)	849
Sse9I	AATT	5 cut(s)	474, 537, 693, 769, 789
SseBI	AGGCCT	1 cut(s)	756
SsiI	CCGC	2 cut(s)	278, 294
SspMI	CTAG	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	756
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	2 cut(s)	443, 550
TaaI	ACNGT	2 cut(s)	829, 857
TaqI	TCGA	2 cut(s)	513, 595
TasI	AATT	5 cut(s)	474, 537, 693, 769, 789
TatI	WGTACW	2 cut(s)	795, 1035
TfiI	GAWTC	3 cut(s)	625, 725, 734
Tru1I	TTAA	3 cut(s)	452, 1017, 1111
Tru9I	TTAA	3 cut(s)	452, 1017, 1111
TscAI	CASTG	4 cut(s)	193, 396, 1087, 1111
TseI	GCWGC	3 cut(s)	5, 497, 899
TspDTI	ATGAA	4 cut(s)	477, 530, 590, 883
TspGWI	ACGGA	2 cut(s)	123, 1080
TspRI	CASTG	4 cut(s)	193, 396, 1087, 1111
Van91I	CCANNNNNTGG	1 cut(s)	1073
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	2 cut(s)	537, 789
XceI	RCATGY	3 cut(s)	131, 323, 849
XmnI	GAANNNNTTC	1 cut(s)	331
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.