MD15G1400600.v1.1

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
50151713 .. 50154622
2910 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1400600.v1.1.491

Sequence Viewer

Length: 1131 bp
ATGGCTACCACTAATCAAACTCAAGTAGGTGGTCCCACAAGCCCTCTCCTTGATCCGTACAAACTTGGAAACTTCAATCTTTCTCATAGAGTTGTCTTAGCACCATTGACTAGACAAAGATCATACGGAAATGTTCCTCAGCCACATGCCGTGTTATATTACTCTCAGAGAACATCTAACGGGGGTCTTCTCATAACTGAAGCTACTGGAGTTTCTGACACAGCTCAAGGGTACCCAGATACTCCCGGTATATGGACAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTTGACGCTGTTCATGCTAAAGGAGGCATCTTCTTCTGTCAGATTTGGCATGTTGGGAGGGTTTCAAATACCGGATCTCAGCCAAATGGGCAAGCTCCAATCTCTTCTACTGACAAGTCACTAACCTCAGAAACACCATCTAATGGCGTTTATGTTATTGAATTTTCTCCTCCTAGGCGATTGAGGACAGATGAAGTCCCACAAATAGTCAATGATTTCAGACTTGCTGCAAGGAATGCTATGGAAGCCGGCTTTGATGGAGTGGAAATTCATGGGGCCCATGGCTACCTTATTGATCAGTTTCTGAAAGATCAAGTGAATGACCGAACAGACCAATATGGCGGATCTGTGGAGAATCGTTGTCGATTTGCTCTGGAAATTGTTGAAGCTGTCGCTAACGAAATAGGAGCAGATAAAGTTGGAATTAGATTATCTCCATTTGCCGACTTTATGGACTCAGGGGATTCAAATCCAAAAGAATTGGGCCTCTGTATGGCCAATTCATTGAACAAATATGGGATCCTGTACTGCCACATGGTTGAGCCGAGGATGAAGATAGGTGCAGAAAAGAGTGACTATCCCCAGGGTCTTGCACCAGTGAGAAAGGCTTTTAATGGTACCTTCATTGCTGCTGGTGGTTACGACAAGGAAGATGGGAACAATGCTCTGGCTGAGGGCCGTGCAGATCTTATTGCTTATGGCCGTATTTTCCTGGCGAATCCGGATTTGCCAAAGAGATTTGAGCTTACTGCTCCTCTGAACAAGTACAACAGAGAGACATTCTACACATCTGATCCCGTCGTTGGTTACACTGATTATCCATTTCTTGAGGCCACTACTTAA

Protein Analysis

377

Amino Acids

41.21

Weight (kDa)

5.46

Isoelectric Point (pI)

28.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_FMN PF00724 16 - 346 1.6e-87 NADH:flavin oxidoreductase / NADH oxidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 231, 905
AccB1I GGYRCC 2 cut(s) 231, 905
AccB7I CCANNNNNTGG 1 cut(s) 431
AccIII TCCGGA 1 cut(s) 1009
AciI CCGC 1 cut(s) 630
AclWI GGATC 6 cut(s) 47, 370, 640, 802, 815, 1076
AcoI YGGCCR 2 cut(s) 783, 988
AcsI RAATTY 2 cut(s) 449, 555
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 5 cut(s) 59, 233, 815, 907, 1055
AfiI CCNNNNNNNGG 4 cut(s) 252, 431, 781, 1091
AgsI TTSAA 7 cut(s) 76, 272, 354, 449, 674, 756, 796
AjnI CCWGG 2 cut(s) 870, 999
AluBI AGCT 5 cut(s) 203, 224, 383, 677, 1033
AluI AGCT 5 cut(s) 203, 224, 383, 677, 1033
Alw26I GTCTC 1 cut(s) 1058
AlwI GGATC 6 cut(s) 47, 370, 640, 802, 815, 1076
AlwNI CAGNNNCTG 1 cut(s) 592
Aor13HI TCCGGA 1 cut(s) 1009
AoxI GGCC 6 cut(s) 564, 772, 783, 964, 988, 1119
ApaI GGGCCC 1 cut(s) 568
ApeKI GCWGC 2 cut(s) 515, 917
ApoI RAATTY 2 cut(s) 449, 555
Asp718I GGTACC 2 cut(s) 231, 905
AspA2I CCTAGG 1 cut(s) 461
AspS9I GGNCC 5 cut(s) 32, 564, 565, 772, 964
AsuC2I CCSGG 1 cut(s) 246
AvaII GGWCC 1 cut(s) 32
AvrII CCTAGG 1 cut(s) 461
BaeGI GKGCMC 1 cut(s) 568
BalI TGGCCA 1 cut(s) 785
BamHI GGATCC 1 cut(s) 807
BanI GGYRCC 2 cut(s) 231, 905
BanII GRGCYC 1 cut(s) 568
BbsI GAAGAC 1 cut(s) 179
BbvCI CCTCAGC 2 cut(s) 138, 960
BbvI GCAGC 2 cut(s) 502, 904
BccI CCATC 3 cut(s) 433, 539, 935
BceAI ACGGC 3 cut(s) 134, 951, 975
BciT130I CCWGG 2 cut(s) 872, 1001
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 1058
BfaI CTAG 2 cut(s) 111, 462
BglI GCCNNNNNGGC 1 cut(s) 376
BglII AGATCT 1 cut(s) 973
BisI GCNGC 2 cut(s) 516, 918
BlnI CCTAGG 1 cut(s) 461
BlsI GCNGC 2 cut(s) 517, 919
Bme1390I CCNGG 3 cut(s) 246, 872, 1001
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 5 cut(s) 32, 564, 565, 772, 964
BmiI GGNNCC 6 cut(s) 34, 233, 565, 566, 809, 907
BmrFI CCNGG 3 cut(s) 246, 872, 1001
BmsI GCATC 1 cut(s) 324
BpiI GAAGAC 1 cut(s) 179
BpmI CTGGAG 1 cut(s) 228
Bpu10I CCTNAGC 2 cut(s) 138, 960
BpuEI CTTGAG 2 cut(s) 6, 210
BpuMI CCSGG 1 cut(s) 246
BsaBI GATNNNNATC 1 cut(s) 756
BsaJI CCNNGG 5 cut(s) 461, 568, 833, 870, 871
BsaWI WCCGGW 2 cut(s) 359, 1009
Bsc4I CCNNNNNNNGG 4 cut(s) 252, 431, 781, 1091
Bse118I RCCGGY 1 cut(s) 536
Bse1I ACTGG 2 cut(s) 211, 884
Bse3DI GCAATG 1 cut(s) 912
Bse8I GATNNNNATC 1 cut(s) 756
BseAI TCCGGA 1 cut(s) 1009
BseBI CCWGG 2 cut(s) 872, 1001
BseDI CCNNGG 5 cut(s) 461, 568, 833, 870, 871
BseGI GGATG 1 cut(s) 843
BseJI GATNNNNATC 1 cut(s) 756
BseLI CCNNNNNNNGG 4 cut(s) 252, 431, 781, 1091
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 6 cut(s) 152, 179, 380, 429, 759, 951
BseNI ACTGG 2 cut(s) 211, 884
BseRI GAGGAG 2 cut(s) 447, 1032
BseSI GKGCMC 1 cut(s) 568
BseXI GCAGC 2 cut(s) 502, 904
BsgI GTGCAG 2 cut(s) 870, 990
BshFI GGCC 6 cut(s) 566, 774, 785, 966, 990, 1121
BshNI GGYRCC 2 cut(s) 231, 905
BsiSI CCGG 4 cut(s) 246, 360, 537, 1010
BslFI GGGAC 2 cut(s) 18, 470
BslI CCNNNNNNNGG 4 cut(s) 252, 431, 781, 1091
BsmAI GTCTC 1 cut(s) 1058
BsmFI GGGAC 2 cut(s) 18, 470
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 6 cut(s) 566, 774, 785, 966, 990, 1121
Bsp120I GGGCCC 1 cut(s) 564
Bsp1286I GDGCHC 1 cut(s) 568
Bsp13I TCCGGA 1 cut(s) 1009
Bsp143I GATC 9 cut(s) 52, 119, 362, 583, 598, 632, 807, 973, 1081
Bsp19I CCATGG 1 cut(s) 568
BspACI CCGC 1 cut(s) 630
BspANI GGCC 6 cut(s) 566, 774, 785, 966, 990, 1121
BspCNI CTCAG 6 cut(s) 151, 178, 379, 428, 758, 952
BspEI TCCGGA 1 cut(s) 1009
BspLI GGNNCC 6 cut(s) 34, 233, 565, 566, 809, 907
BspPI GGATC 6 cut(s) 47, 370, 640, 802, 815, 1076
BspT107I GGYRCC 2 cut(s) 231, 905
BsrDI GCAATG 1 cut(s) 912
BsrFI RCCGGY 1 cut(s) 536
BsrI ACTGG 2 cut(s) 211, 884
BssAI RCCGGY 1 cut(s) 536
BssECI CCNNGG 5 cut(s) 461, 568, 833, 870, 871
BssMI GATC 9 cut(s) 52, 119, 362, 583, 598, 632, 807, 973, 1081
BssT1I CCWWGG 2 cut(s) 461, 568
Bst2UI CCWGG 2 cut(s) 872, 1001
Bst6I CTCTTC 1 cut(s) 397
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 2 cut(s) 381, 538
BstDEI CTNAG 7 cut(s) 97, 138, 165, 366, 415, 745, 960
BstDSI CCRYGG 1 cut(s) 568
BstF5I GGATG 1 cut(s) 843
BstKTI GATC 9 cut(s) 55, 122, 365, 586, 601, 635, 810, 976, 1084
BstMAI GTCTC 1 cut(s) 1058
BstMBI GATC 9 cut(s) 52, 119, 362, 583, 598, 632, 807, 973, 1081
BstMWI GCNNNNNNNGC 4 cut(s) 302, 376, 524, 533
BstNI CCWGG 2 cut(s) 872, 1001
BstNSI RCATGY 2 cut(s) 149, 341
BstSCI CCNGG 3 cut(s) 244, 870, 999
BstSLI GKGCMC 1 cut(s) 568
BstV1I GCAGC 2 cut(s) 502, 904
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 4 cut(s) 362, 632, 807, 973
BstYI RGATCY 4 cut(s) 362, 632, 807, 973
BsuRI GGCC 6 cut(s) 566, 774, 785, 966, 990, 1121
BtgI CCRYGG 1 cut(s) 568
BtsCI GGATG 1 cut(s) 843
BtsIMutI CAGTG 2 cut(s) 891, 1098
Cac8I GCNNGC 2 cut(s) 381, 538
CaiI CAGNNNCTG 1 cut(s) 592
Cfr10I RCCGGY 1 cut(s) 536
Cfr13I GGNCC 5 cut(s) 32, 564, 565, 772, 964
CseI GACGC 1 cut(s) 302
Csp6I GTAC 5 cut(s) 58, 232, 814, 906, 1054
CviAII CATG 7 cut(s) 146, 276, 302, 338, 560, 569, 823
CviQI GTAC 5 cut(s) 58, 232, 814, 906, 1054
DdeI CTNAG 7 cut(s) 97, 138, 165, 366, 415, 745, 960
DpnI GATC 9 cut(s) 54, 121, 364, 585, 600, 634, 809, 975, 1083
DpnII GATC 9 cut(s) 52, 119, 362, 583, 598, 632, 807, 973, 1081
EaeI YGGCCR 2 cut(s) 783, 988
Eam1104I CTCTTC 1 cut(s) 397
EarI CTCTTC 1 cut(s) 397
EciI GGCGGA 1 cut(s) 645
Eco130I CCWWGG 2 cut(s) 461, 568
Eco24I GRGCYC 1 cut(s) 568
Eco47I GGWCC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 564
EcoRII CCWGG 2 cut(s) 870, 999
EcoT14I CCWWGG 2 cut(s) 461, 568
EcoT38I GRGCYC 1 cut(s) 568
ErhI CCWWGG 2 cut(s) 461, 568
FaeI CATG 7 cut(s) 149, 279, 305, 341, 563, 572, 826
FaqI GGGAC 2 cut(s) 18, 470
FatI CATG 7 cut(s) 145, 275, 301, 337, 559, 568, 822
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 2 cut(s) 516, 918
FokI GGATG 1 cut(s) 850
FriOI GRGCYC 1 cut(s) 568
Fsp4HI GCNGC 2 cut(s) 516, 918
FspBI CTAG 2 cut(s) 111, 462
GluI GCNGC 2 cut(s) 516, 918
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 6 cut(s) 566, 774, 785, 966, 990, 1121
HapII CCGG 4 cut(s) 246, 360, 537, 1010
HgaI GACGC 1 cut(s) 302
Hin1II CATG 7 cut(s) 149, 279, 305, 341, 563, 572, 826
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 4 cut(s) 643, 743, 752, 1006
HpaII CCGG 4 cut(s) 246, 360, 537, 1010
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 8 cut(s) 168, 217, 330, 418, 509, 594, 1047, 1081
Hpy188III TCNNGA 3 cut(s) 662, 1010, 1115
Hpy8I GTNNAC 1 cut(s) 292
Hpy99I CGWCG 1 cut(s) 1091
HpyAV CCTTC 1 cut(s) 919
HpyCH4V TGCA 4 cut(s) 518, 851, 881, 971
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 376, 524, 533
HpyF3I CTNAG 7 cut(s) 97, 138, 165, 366, 415, 745, 960
Hsp92II CATG 7 cut(s) 149, 279, 305, 341, 563, 572, 826
Kpn2I TCCGGA 1 cut(s) 1009
KpnI GGTACC 2 cut(s) 235, 909
KroI GCCGGC 1 cut(s) 536
KroNI GCCGGC 1 cut(s) 538
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 9 cut(s) 52, 119, 362, 583, 598, 632, 807, 973, 1081
LmnI GCTCC 4 cut(s) 262, 388, 695, 1045
Lsp1109I GCAGC 2 cut(s) 502, 904
LweI GCATC 1 cut(s) 324
MaeI CTAG 2 cut(s) 111, 462
MaeIII GTNAC 4 cut(s) 405, 860, 926, 1094
MalI GATC 9 cut(s) 54, 121, 364, 585, 600, 634, 809, 975, 1083
MboI GATC 9 cut(s) 52, 119, 362, 583, 598, 632, 807, 973, 1081
MboII GAAGA 6 cut(s) 179, 310, 313, 384, 853, 950
MflI RGATCY 4 cut(s) 362, 632, 807, 973
MhlI GDGCHC 1 cut(s) 568
MlsI TGGCCA 1 cut(s) 785
MluCI AATT 6 cut(s) 449, 555, 666, 711, 767, 787
MluNI TGGCCA 1 cut(s) 785
MlyI GAGTC 1 cut(s) 737
MmeI TCCRAC 1 cut(s) 688
Mox20I TGGCCA 1 cut(s) 785
MroI TCCGGA 1 cut(s) 1009
MroNI GCCGGC 1 cut(s) 536
MscI TGGCCA 1 cut(s) 785
MseI TTAA 2 cut(s) 900, 1129
Msp20I TGGCCA 1 cut(s) 785
MspI CCGG 4 cut(s) 246, 360, 537, 1010
MspR9I CCNGG 3 cut(s) 246, 872, 1001
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 2 cut(s) 872, 1001
MwoI GCNNNNNNNGC 4 cut(s) 302, 376, 524, 533
NaeI GCCGGC 1 cut(s) 538
NciI CCSGG 1 cut(s) 246
NcoI CCATGG 1 cut(s) 568
NdeII GATC 9 cut(s) 52, 119, 362, 583, 598, 632, 807, 973, 1081
NgoMIV GCCGGC 1 cut(s) 536
NlaIII CATG 7 cut(s) 149, 279, 305, 341, 563, 572, 826
NlaIV GGNNCC 6 cut(s) 34, 233, 565, 566, 809, 907
NmeAIII GCCGAG 1 cut(s) 858
NmuCI GTSAC 2 cut(s) 405, 860
NspI RCATGY 2 cut(s) 149, 341
PasI CCCWGGG 1 cut(s) 871
PctI GAATGC 1 cut(s) 529
PdiI GCCGGC 1 cut(s) 538
PfeI GAWTC 3 cut(s) 643, 752, 1006
PflMI CCANNNNNTGG 1 cut(s) 431
PkrI GCNGC 2 cut(s) 517, 919
PleI GAGTC 1 cut(s) 737
PpsI GAGTC 1 cut(s) 737
Psp6I CCWGG 2 cut(s) 870, 999
PspGI CCWGG 2 cut(s) 870, 999
PspN4I GGNNCC 6 cut(s) 34, 233, 565, 566, 809, 907
PspOMI GGGCCC 1 cut(s) 564
PspPI GGNCC 5 cut(s) 32, 564, 565, 772, 964
PstNI CAGNNNCTG 1 cut(s) 592
PsuI RGATCY 4 cut(s) 362, 632, 807, 973
RsaI GTAC 5 cut(s) 59, 233, 815, 907, 1055
RsaNI GTAC 5 cut(s) 58, 232, 814, 906, 1054
SaqAI TTAA 2 cut(s) 900, 1129
SatI GCNGC 2 cut(s) 516, 918
Sau3AI GATC 9 cut(s) 52, 119, 362, 583, 598, 632, 807, 973, 1081
Sau96I GGNCC 5 cut(s) 32, 564, 565, 772, 964
SchI GAGTC 1 cut(s) 737
ScrFI CCNGG 3 cut(s) 246, 872, 1001
SduI GDGCHC 1 cut(s) 568
SfaNI GCATC 1 cut(s) 324
SinI GGWCC 1 cut(s) 32
SmlI CTYRAG 3 cut(s) 21, 225, 1115
SmoI CTYRAG 3 cut(s) 21, 225, 1115
Sse9I AATT 6 cut(s) 449, 555, 666, 711, 767, 787
SsiI CCGC 1 cut(s) 630
SspMI CTAG 2 cut(s) 111, 462
StyD4I CCNGG 3 cut(s) 244, 870, 999
StyI CCWWGG 2 cut(s) 461, 568
TaqI TCGA 1 cut(s) 652
TaqII GACCGA 1 cut(s) 627
TasI AATT 6 cut(s) 449, 555, 666, 711, 767, 787
TatI WGTACW 2 cut(s) 813, 1053
TfiI GAWTC 3 cut(s) 643, 752, 1006
Tru1I TTAA 2 cut(s) 900, 1129
Tru9I TTAA 2 cut(s) 900, 1129
TscAI CASTG 2 cut(s) 891, 1105
TseFI GTSAC 2 cut(s) 405, 860
TseI GCWGC 2 cut(s) 515, 917
Tsp45I GTSAC 2 cut(s) 405, 860
TspDTI ATGAA 6 cut(s) 290, 495, 548, 780, 854, 901
TspGWI ACGGA 2 cut(s) 45, 141
TspRI CASTG 2 cut(s) 891, 1105
Van91I CCANNNNNTGG 1 cut(s) 431
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 2 cut(s) 449, 555
XceI RCATGY 2 cut(s) 149, 341
XmaJI CCTAGG 1 cut(s) 461
XspI CTAG 2 cut(s) 111, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.