Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

16536561 .. 16541486

Gene Structure 4926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001504

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGAGAACAAAACTGAGAATAAATCTTAGAGATTCAGATCTAAGATCTAAAAGCAGATTTGAAACAGTGAGGACAAAATCAGATGCAAAAGAAGAGGAAAACAAGGAAATCAAAACACCACTTGGGCGAGGAATCACCACAGAGGATGAGGAATCACCACAAAGGGTGAGGAATCACCACATGGGTGAGGAAAATTTGGGGAACTGCAGAGAAGGGAGAACCTGGCCACCTGCCATCTTATATTACTCTCAGAGAGCATCCAAAGGGGGTCTTCTCATAACTGAAGCCACTGGAGTTTCTGACACAGCACAAGGGTATTCAGATACTCCTGGTATATGGACAAGGGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGCTAAAGGGGGTGTCTTCTTTTGTCAGATTTGGCATGTGGGGAGGGTTTCAAATAGTGGCTTTCAGCCAGATGGGCAAGCTCCAATCTCTTCAACTGACAAGTCCCTAACCCCCCAAAGAGGATCTAATGGTATTGATGTTATGCAATTCACACCTCCAAGACGATTAAGGACAGATGAAATTCCTCAAATTGTCAATGATTTCAGACTAGCTGCAAGGAATGCCATGGAAGCTGGCTTTGATGGGGTTGAAATTCATGGCGCCAATGGCTACCTTATAGATCAGTTTTTAAAAGATCAAGTAAATGATCGAACAGACCAATATGGTGGATCTCTAGAAAAGCGTTGCCGATTTTCACTAGACATTGTTGAAGCTGTTGTCAATGAGATAGGAGCAGATAAAGTTGGAGTTAGATTATCTCCATTTGCCAACTATATGGAATCTGGAGATTCTAATCCAACGGAATTGGGCCTTTATCTAGTCAATTCCTTGAACAAATATGGAATCCTGTACTGCCACATGGTTGAGCCAAGAATGAAGACACTTGGAGAAAAAATTGAATGTCTCCACAGTCTCGTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGGAAGATGGGAACAATGCTGTGGCTGAGGGCCGTGCAGATCTTATTGCTTTTGGTCGTTGGTTCTTGGCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAATAAGTACATCAGAGATACATTCTACATATCTGATCCCGTTCTTGGTTACACTGATTATCCATTTCTTGACAGCACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

405

Amino Acids

45.24

Weight (kDa)

5.91

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	80 - 377	1.3e-77	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	238
Acc36I	ACCTGC	1 cut(s)	238
Acc65I	GGTACC	1 cut(s)	989
AccB1I	GGYRCC	2 cut(s)	647, 989
AclWI	GGATC	3 cut(s)	517, 724, 1160
AcoI	YGGCCR	1 cut(s)	224
AcsI	RAATTY	3 cut(s)	193, 567, 639
AcuI	CTGAAG	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	648
AfaI	GTAC	5 cut(s)	384, 899, 966, 991, 1139
AfiI	CCNNNNNNNGG	2 cut(s)	506, 1175
AgsI	TTSAA	8 cut(s)	62, 356, 438, 480, 638, 758, 880, 947
AjnI	CCWGG	2 cut(s)	221, 328
AleI	CACNNNNGTG	1 cut(s)	183
AluBI	AGCT	5 cut(s)	467, 599, 620, 761, 1117
AluI	AGCT	5 cut(s)	467, 599, 620, 761, 1117
Alw26I	GTCTC	2 cut(s)	956, 965
AlwI	GGATC	3 cut(s)	517, 724, 1160
AoxI	GGCC	3 cut(s)	224, 856, 1048
ApeKI	GCWGC	2 cut(s)	599, 1001
ApoI	RAATTY	3 cut(s)	193, 567, 639
Asp718I	GGTACC	1 cut(s)	989
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	2 cut(s)	856, 1048
AsuHPI	GGTGA	5 cut(s)	127, 147, 167, 178, 197
BalI	TGGCCA	1 cut(s)	226
BanI	GGYRCC	2 cut(s)	647, 989
BbsI	GAAGAC	3 cut(s)	263, 394, 932
BbvCI	CCTCAGC	1 cut(s)	1044
BbvI	GCAGC	2 cut(s)	586, 988
BccI	CCATC	4 cut(s)	242, 452, 623, 1019
BceAI	ACGGC	1 cut(s)	1035
BciT130I	CCWGG	2 cut(s)	223, 330
BcoDI	GTCTC	2 cut(s)	956, 965
BfaI	CTAG	4 cut(s)	596, 722, 746, 866
BfmI	CTRYAG	1 cut(s)	205
BfoI	RGCGCY	1 cut(s)	651
BfuAI	ACCTGC	1 cut(s)	238
BglI	GCCNNNNNGGC	1 cut(s)	460
BglII	AGATCT	3 cut(s)	37, 44, 1057
BisI	GCNGC	2 cut(s)	600, 1002
BlsI	GCNGC	2 cut(s)	601, 1003
Bme1390I	CCNGG	2 cut(s)	223, 330
BmgT120I	GGNCC	2 cut(s)	856, 1048
BmiI	GGNNCC	2 cut(s)	649, 991
BmrFI	CCNGG	2 cut(s)	223, 330
BmsI	GCATC	2 cut(s)	73, 266
BpiI	GAAGAC	3 cut(s)	263, 394, 932
BpmI	CTGGAG	2 cut(s)	312, 852
Bpu10I	CCTNAGC	1 cut(s)	1044
BsaBI	GATNNNNATC	2 cut(s)	36, 840
BsaHI	GRCGYC	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	612
Bsc4I	CCNNNNNNNGG	2 cut(s)	506, 1175
Bse1I	ACTGG	1 cut(s)	295
Bse3DI	GCAATG	1 cut(s)	996
Bse8I	GATNNNNATC	2 cut(s)	36, 840
BseBI	CCWGG	2 cut(s)	223, 330
BseDI	CCNNGG	1 cut(s)	612
BseGI	GGATG	2 cut(s)	151, 257
BseJI	GATNNNNATC	2 cut(s)	36, 840
BseLI	CCNNNNNNNGG	2 cut(s)	506, 1175
BseMI	GCAATG	1 cut(s)	996
BseMII	CTCAG	3 cut(s)	5, 263, 1035
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	1116
BseXI	GCAGC	2 cut(s)	586, 988
BsgI	GTGCAG	1 cut(s)	1074
BshFI	GGCC	3 cut(s)	226, 858, 1050
BshNI	GGYRCC	2 cut(s)	647, 989
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	2 cut(s)	506, 1175
BsmAI	GTCTC	2 cut(s)	956, 965
BsmFI	GGGAC	1 cut(s)	475
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	3 cut(s)	226, 858, 1050
Bsp1407I	TGTACA	1 cut(s)	382
Bsp143I	GATC	9 cut(s)	37, 44, 509, 667, 682, 694, 716, 1057, 1165
Bsp19I	CCATGG	1 cut(s)	612
BspANI	GGCC	3 cut(s)	226, 858, 1050
BspCNI	CTCAG	3 cut(s)	6, 262, 1036
BspLI	GGNNCC	2 cut(s)	649, 991
BspMAI	CTGCAG	1 cut(s)	209
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	3 cut(s)	517, 724, 1160
BspT107I	GGYRCC	2 cut(s)	647, 989
BsrDI	GCAATG	1 cut(s)	996
BsrGI	TGTACA	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	612
BssMI	GATC	9 cut(s)	37, 44, 509, 667, 682, 694, 716, 1057, 1165
BssNI	GRCGYC	1 cut(s)	648
BssT1I	CCWWGG	1 cut(s)	612
Bst2UI	CCWGG	2 cut(s)	223, 330
Bst4CI	ACNGT	2 cut(s)	67, 959
Bst6I	CTCTTC	2 cut(s)	87, 481
BstACI	GRCGYC	1 cut(s)	648
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstAUI	TGTACA	1 cut(s)	382
BstC8I	GCNNGC	2 cut(s)	465, 622
BstDEI	CTNAG	5 cut(s)	14, 26, 41, 249, 1044
BstDSI	CCRYGG	1 cut(s)	612
BstF5I	GGATG	2 cut(s)	151, 257
BstH2I	RGCGCY	1 cut(s)	651
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	9 cut(s)	40, 47, 512, 670, 685, 697, 719, 1060, 1168
BstMAI	GTCTC	2 cut(s)	956, 965
BstMBI	GATC	9 cut(s)	37, 44, 509, 667, 682, 694, 716, 1057, 1165
BstMWI	GCNNNNNNNGC	5 cut(s)	386, 460, 608, 617, 654
BstNI	CCWGG	2 cut(s)	223, 330
BstNSI	RCATGY	2 cut(s)	389, 425
BstSCI	CCNGG	2 cut(s)	221, 328
BstSFI	CTRYAG	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	586, 988
BstV2I	GAAGAC	3 cut(s)	263, 394, 932
BstX2I	RGATCY	5 cut(s)	37, 44, 509, 716, 1057
BstXI	CCANNNNNNTGG	2 cut(s)	713, 823
BstYI	RGATCY	5 cut(s)	37, 44, 509, 716, 1057
BsuRI	GGCC	3 cut(s)	226, 858, 1050
BtgI	CCRYGG	1 cut(s)	612
BtsCI	GGATG	2 cut(s)	151, 257
BtsI	GCAGTG	1 cut(s)	1206
BtsIMutI	CAGTG	4 cut(s)	72, 288, 1182, 1206
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	2 cut(s)	465, 622
CfoI	GCGC	1 cut(s)	650
Cfr13I	GGNCC	2 cut(s)	856, 1048
Csp6I	GTAC	5 cut(s)	383, 898, 965, 990, 1138
CviAII	CATG	8 cut(s)	181, 360, 386, 422, 613, 644, 907, 970
CviQI	GTAC	5 cut(s)	383, 898, 965, 990, 1138
DdeI	CTNAG	5 cut(s)	14, 26, 41, 249, 1044
DinI	GGCGCC	1 cut(s)	649
DpnI	GATC	9 cut(s)	39, 46, 511, 669, 684, 696, 718, 1059, 1167
DpnII	GATC	9 cut(s)	37, 44, 509, 667, 682, 694, 716, 1057, 1165
DraI	TTTAAA	1 cut(s)	678
EaeI	YGGCCR	1 cut(s)	224
Eam1104I	CTCTTC	2 cut(s)	87, 481
EarI	CTCTTC	2 cut(s)	87, 481
Eco130I	CCWWGG	1 cut(s)	612
Eco57I	CTGAAG	1 cut(s)	303
EcoRII	CCWGG	2 cut(s)	221, 328
EcoT14I	CCWWGG	1 cut(s)	612
EgeI	GGCGCC	1 cut(s)	649
EheI	GGCGCC	1 cut(s)	649
ErhI	CCWWGG	1 cut(s)	612
FaeI	CATG	8 cut(s)	184, 363, 389, 425, 616, 647, 910, 973
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	8 cut(s)	180, 359, 385, 421, 612, 643, 906, 969
Fnu4HI	GCNGC	2 cut(s)	600, 1002
FokI	GGATG	2 cut(s)	158, 244
Fsp4HI	GCNGC	2 cut(s)	600, 1002
FspBI	CTAG	4 cut(s)	596, 722, 746, 866
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	2 cut(s)	600, 1002
GsuI	CTGGAG	2 cut(s)	312, 852
HaeII	RGCGCY	1 cut(s)	651
HaeIII	GGCC	3 cut(s)	226, 858, 1050
HhaI	GCGC	1 cut(s)	650
Hin1I	GRCGYC	1 cut(s)	648
Hin1II	CATG	8 cut(s)	184, 363, 389, 425, 616, 647, 910, 973
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HinfI	GANTC	7 cut(s)	32, 132, 152, 172, 827, 836, 891
HphI	GGTGA	5 cut(s)	127, 147, 167, 178, 197
Hpy188I	TCNGA	9 cut(s)	37, 82, 252, 301, 322, 414, 593, 1145, 1165
Hpy188III	TCNNGA	4 cut(s)	722, 831, 1094, 1199
HpyAV	CCTTC	2 cut(s)	206, 1003
HpyCH4III	ACNGT	2 cut(s)	67, 959
HpyCH4V	TGCA	5 cut(s)	86, 207, 532, 602, 1055
HpyF10VI	GCNNNNNNNGC	5 cut(s)	386, 460, 608, 617, 654
HpyF3I	CTNAG	5 cut(s)	14, 26, 41, 249, 1044
Hsp92I	GRCGYC	1 cut(s)	648
Hsp92II	CATG	8 cut(s)	184, 363, 389, 425, 616, 647, 910, 973
HspAI	GCGC	1 cut(s)	648
KasI	GGCGCC	1 cut(s)	647
KpnI	GGTACC	1 cut(s)	993
Kzo9I	GATC	9 cut(s)	37, 44, 509, 667, 682, 694, 716, 1057, 1165
LmnI	GCTCC	4 cut(s)	346, 472, 779, 1129
Lsp1109I	GCAGC	2 cut(s)	586, 988
LweI	GCATC	2 cut(s)	73, 266
MaeI	CTAG	4 cut(s)	596, 722, 746, 866
MaeIII	GTNAC	1 cut(s)	1178
MalI	GATC	9 cut(s)	39, 46, 511, 669, 684, 696, 718, 1059, 1167
MboI	GATC	9 cut(s)	37, 44, 509, 667, 682, 694, 716, 1057, 1165
MboII	GAAGA	6 cut(s)	104, 263, 394, 468, 937, 1034
MflI	RGATCY	5 cut(s)	37, 44, 509, 716, 1057
MlsI	TGGCCA	1 cut(s)	226
MluCI	AATT	8 cut(s)	193, 533, 567, 576, 639, 851, 871, 942
MluNI	TGGCCA	1 cut(s)	226
Mly113I	GGCGCC	1 cut(s)	648
MmeI	TCCRAC	2 cut(s)	772, 869
Mox20I	TGGCCA	1 cut(s)	226
MscI	TGGCCA	1 cut(s)	226
MseI	TTAA	4 cut(s)	554, 677, 984, 1119
MslI	CAYNNNNRTG	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	226
MspR9I	CCNGG	2 cut(s)	223, 330
Mva1269I	GAATGC	1 cut(s)	613
MvaI	CCWGG	2 cut(s)	223, 330
MwoI	GCNNNNNNNGC	5 cut(s)	386, 460, 608, 617, 654
NarI	GGCGCC	1 cut(s)	648
NcoI	CCATGG	1 cut(s)	612
NdeII	GATC	9 cut(s)	37, 44, 509, 667, 682, 694, 716, 1057, 1165
NlaIII	CATG	8 cut(s)	184, 363, 389, 425, 616, 647, 910, 973
NlaIV	GGNNCC	2 cut(s)	649, 991
NspI	RCATGY	2 cut(s)	389, 425
OliI	CACNNNNGTG	1 cut(s)	183
PaqCI	CACCTGC	1 cut(s)	238
PctI	GAATGC	1 cut(s)	613
PfeI	GAWTC	7 cut(s)	32, 132, 152, 172, 827, 836, 891
PkrI	GCNGC	2 cut(s)	601, 1003
PluTI	GGCGCC	1 cut(s)	651
Psp6I	CCWGG	2 cut(s)	221, 328
PspGI	CCWGG	2 cut(s)	221, 328
PspN4I	GGNNCC	2 cut(s)	649, 991
PspPI	GGNCC	2 cut(s)	856, 1048
PstI	CTGCAG	1 cut(s)	209
PsuI	RGATCY	5 cut(s)	37, 44, 509, 716, 1057
RsaI	GTAC	5 cut(s)	384, 899, 966, 991, 1139
RsaNI	GTAC	5 cut(s)	383, 898, 965, 990, 1138
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	4 cut(s)	554, 677, 984, 1119
SatI	GCNGC	2 cut(s)	600, 1002
Sau3AI	GATC	9 cut(s)	37, 44, 509, 667, 682, 694, 716, 1057, 1165
Sau96I	GGNCC	2 cut(s)	856, 1048
ScrFI	CCNGG	2 cut(s)	223, 330
SfaNI	GCATC	2 cut(s)	73, 266
SfcI	CTRYAG	1 cut(s)	205
SfoI	GGCGCC	1 cut(s)	649
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	8 cut(s)	193, 533, 567, 576, 639, 851, 871, 942
SspDI	GGCGCC	1 cut(s)	647
SspMI	CTAG	4 cut(s)	596, 722, 746, 866
StyD4I	CCNGG	2 cut(s)	221, 328
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	2 cut(s)	67, 959
TaqI	TCGA	1 cut(s)	697
TasI	AATT	8 cut(s)	193, 533, 567, 576, 639, 851, 871, 942
TatI	WGTACW	3 cut(s)	382, 897, 1137
TfiI	GAWTC	7 cut(s)	32, 132, 152, 172, 827, 836, 891
Tru1I	TTAA	4 cut(s)	554, 677, 984, 1119
Tru9I	TTAA	4 cut(s)	554, 677, 984, 1119
TscAI	CASTG	4 cut(s)	72, 295, 1189, 1213
TseI	GCWGC	2 cut(s)	599, 1001
TspDTI	ATGAA	4 cut(s)	579, 632, 938, 985
TspGWI	ACGGA	1 cut(s)	863
TspRI	CASTG	4 cut(s)	72, 295, 1189, 1213
XapI	RAATTY	3 cut(s)	193, 567, 639
XbaI	TCTAGA	1 cut(s)	721
XceI	RCATGY	2 cut(s)	389, 425
XspI	CTAG	4 cut(s)	596, 722, 746, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.