Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00560

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

64885 .. 68370

Gene Structure 3486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G012570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCTAACCAAGCTCCCACACTTCCTCTTCTTACTCCTTACAAAATGGGAAAGTTTGATCTTTCTCACAGAGTCGTTTTAGCGCCATTGACTAGACAGAGATCATATGGAAATGTTCCCCAGCCACATGCCATCTTATATTACTCTCAGAGAACATCTAAAGGGGATCTTCTCATAACTGAAGCCACTGGAGTTTCTGACACAGCACAAGGGTATCCAGATACTCCTGGTATATGGACAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGCTAAAGGGGGTATCTTCTTCTGTCAGATTTGGCATGTGGGGAGGGTTTCAAATACTGGCTTTCAGCCAAATGGACAGGTTCCAATCTCTTCTACTGACAAGCCCATAACGCCCCAAGCTAATGGCGTTGATGTTGCCCAGTTCACCCCTCCTAGACGATTAAGGACAGATGAAATTCCTCAAATTGTCAATGATTTCAGACTTGCTGCAAGGAATGCTATGGAAGCTGGTTTTGATGGGGTTGAAATTCATGGCGCTCATGGCTACCTTATCGATCAGTTTTTAAAAGATCAAGTAAATGATCGAACAGACCAATATGGTGGATCTCTAGAAAAGCGTTGCCGATTTGCACTAGACATTGTTGAAGCTGTTGTCAATGAGATAGGAGCAGATAAAGTTGGAATTAGATTATCTCCATTTGCTGACTATATGGAATCCGGAGATTCTAATCCAAAGGAATTGGGCCTTTATCTAGTCAATTCCTTGAACAAATATCGAATCCTGTACTGCCACATGGTTGAGCCAAGAATGAAGACACTTGGAGAAAAAATTGAATGTCCCCACAGTCTCGTACCCATGAGAAAGGCTTTCAGTGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGAAAGATGGGAACAATGCTGTGGCTGAGGGCCATGCAGATCTTATCGCTTTTGGTCGTTGGTTCTTGGCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTGAATAAGTACAACAGAGATACATTCTACATATCTGATCCAGTTCTTGGTTACACTGATTATCCATTTCTTGACAGCACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

368

Amino Acids

40.95

Weight (kDa)

6.51

Isoelectric Point (pI)

31.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	10 - 341	1.1e-85	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	881
AccB1I	GGYRCC	1 cut(s)	881
AccB7I	CCANNNNNTGG	1 cut(s)	1067
AccIII	TCCGGA	1 cut(s)	722
AclWI	GGATC	3 cut(s)	174, 616, 1052
AcsI	RAATTY	2 cut(s)	459, 531
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	5 cut(s)	282, 791, 858, 883, 1031
AfiI	CCNNNNNNNGG	1 cut(s)	1067
AgsI	TTSAA	6 cut(s)	254, 336, 530, 650, 772, 839
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	5 cut(s)	14, 404, 512, 653, 1009
AluI	AGCT	5 cut(s)	14, 404, 512, 653, 1009
Alw26I	GTCTC	1 cut(s)	857
AlwI	GGATC	3 cut(s)	174, 616, 1052
Aor13HI	TCCGGA	1 cut(s)	722
AoxI	GGCC	2 cut(s)	748, 940
ApeKI	GCWGC	2 cut(s)	491, 893
ApoI	RAATTY	2 cut(s)	459, 531
Asp718I	GGTACC	1 cut(s)	881
AspLEI	GCGC	2 cut(s)	85, 542
AspS9I	GGNCC	2 cut(s)	748, 940
AsuHPI	GGTGA	1 cut(s)	421
BaeI	ACNNNNGTAYC	2 cut(s)	197, 230
BanI	GGYRCC	1 cut(s)	881
BbsI	GAAGAC	1 cut(s)	824
BbvCI	CCTCAGC	1 cut(s)	936
BbvI	GCAGC	2 cut(s)	478, 880
BccI	CCATC	3 cut(s)	140, 515, 911
BciT130I	CCWGG	1 cut(s)	228
BciVI	GTATCC	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	857
BfaI	CTAG	5 cut(s)	93, 438, 614, 638, 758
BfoI	RGCGCY	2 cut(s)	86, 543
BfuI	GTATCC	1 cut(s)	225
BglII	AGATCT	1 cut(s)	949
BisI	GCNGC	2 cut(s)	492, 894
BlsI	GCNGC	2 cut(s)	493, 895
Bme1390I	CCNGG	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	748, 940
BmiI	GGNNCC	2 cut(s)	366, 883
BmrFI	CCNGG	1 cut(s)	228
BmrI	ACTGGG	1 cut(s)	418
BmuI	ACTGGG	1 cut(s)	418
BpiI	GAAGAC	1 cut(s)	824
BpmI	CTGGAG	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	936
Bsa29I	ATCGAT	1 cut(s)	558
BsaBI	GATNNNNATC	1 cut(s)	732
BsaWI	WCCGGW	1 cut(s)	722
Bsc4I	CCNNNNNNNGG	1 cut(s)	1067
Bse1I	ACTGG	4 cut(s)	193, 346, 424, 1061
Bse3DI	GCAATG	1 cut(s)	888
Bse8I	GATNNNNATC	1 cut(s)	732
BseAI	TCCGGA	1 cut(s)	722
BseBI	CCWGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	558
BseJI	GATNNNNATC	1 cut(s)	732
BseLI	CCNNNNNNNGG	1 cut(s)	1067
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	2 cut(s)	161, 927
BseNI	ACTGG	4 cut(s)	193, 346, 424, 1061
BseRI	GAGGAG	1 cut(s)	1008
BseXI	GCAGC	2 cut(s)	478, 880
BseYI	CCCAGC	1 cut(s)	120
BshFI	GGCC	2 cut(s)	750, 942
BshNI	GGYRCC	1 cut(s)	881
BshVI	ATCGAT	1 cut(s)	558
BsiSI	CCGG	1 cut(s)	723
BslFI	GGGAC	1 cut(s)	828
BslI	CCNNNNNNNGG	1 cut(s)	1067
BsmAI	GTCTC	1 cut(s)	857
BsmFI	GGGAC	1 cut(s)	828
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	2 cut(s)	750, 942
Bsp13I	TCCGGA	1 cut(s)	722
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	9 cut(s)	58, 101, 166, 559, 574, 586, 608, 949, 1057
BspANI	GGCC	2 cut(s)	750, 942
BspCNI	CTCAG	2 cut(s)	160, 928
BspDI	ATCGAT	1 cut(s)	558
BspEI	TCCGGA	1 cut(s)	722
BspLI	GGNNCC	2 cut(s)	366, 883
BspPI	GGATC	3 cut(s)	174, 616, 1052
BspT107I	GGYRCC	1 cut(s)	881
BsrDI	GCAATG	1 cut(s)	888
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	4 cut(s)	193, 346, 424, 1061
BssMI	GATC	9 cut(s)	58, 101, 166, 559, 574, 586, 608, 949, 1057
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	851
Bst6I	CTCTTC	2 cut(s)	33, 379
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstAUI	TGTACA	1 cut(s)	280
BstDEI	CTNAG	2 cut(s)	147, 936
BstH2I	RGCGCY	2 cut(s)	86, 543
BstHHI	GCGC	2 cut(s)	85, 542
BstKTI	GATC	9 cut(s)	61, 104, 169, 562, 577, 589, 611, 952, 1060
BstMAI	GTCTC	1 cut(s)	857
BstMBI	GATC	9 cut(s)	58, 101, 166, 559, 574, 586, 608, 949, 1057
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 284, 394, 500, 509, 546
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	3 cut(s)	131, 287, 323
BstSCI	CCNGG	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	478, 880
BstV2I	GAAGAC	1 cut(s)	824
BstX2I	RGATCY	3 cut(s)	166, 608, 949
BstXI	CCANNNNNNTGG	2 cut(s)	407, 605
BstYI	RGATCY	3 cut(s)	166, 608, 949
Bsu15I	ATCGAT	1 cut(s)	558
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	750, 942
BsuTUI	ATCGAT	1 cut(s)	558
BtsI	GCAGTG	1 cut(s)	1098
BtsIMutI	CAGTG	4 cut(s)	186, 883, 1074, 1098
CfoI	GCGC	2 cut(s)	85, 542
Cfr13I	GGNCC	2 cut(s)	748, 940
ClaI	ATCGAT	1 cut(s)	558
Csp6I	GTAC	5 cut(s)	281, 790, 857, 882, 1030
CviAII	CATG	9 cut(s)	128, 258, 284, 320, 536, 545, 799, 862, 944
CviQI	GTAC	5 cut(s)	281, 790, 857, 882, 1030
DdeI	CTNAG	2 cut(s)	147, 936
DpnI	GATC	9 cut(s)	60, 103, 168, 561, 576, 588, 610, 951, 1059
DpnII	GATC	9 cut(s)	58, 101, 166, 559, 574, 586, 608, 949, 1057
DraI	TTTAAA	1 cut(s)	570
Eam1104I	CTCTTC	2 cut(s)	33, 379
EarI	CTCTTC	2 cut(s)	33, 379
Eco57I	CTGAAG	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	226
FaeI	CATG	9 cut(s)	131, 261, 287, 323, 539, 548, 802, 865, 947
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	1 cut(s)	828
FatI	CATG	9 cut(s)	127, 257, 283, 319, 535, 544, 798, 861, 943
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	492, 894
Fsp4HI	GCNGC	2 cut(s)	492, 894
FspBI	CTAG	5 cut(s)	93, 438, 614, 638, 758
GlaI	GCGC	2 cut(s)	84, 541
GluI	GCNGC	2 cut(s)	492, 894
GsaI	CCCAGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	210
HaeII	RGCGCY	2 cut(s)	86, 543
HaeIII	GGCC	2 cut(s)	750, 942
HapII	CCGG	1 cut(s)	723
HhaI	GCGC	2 cut(s)	85, 542
Hin1II	CATG	9 cut(s)	131, 261, 287, 323, 539, 548, 802, 865, 947
Hin6I	GCGC	2 cut(s)	83, 540
HinP1I	GCGC	2 cut(s)	83, 540
HinfI	GANTC	4 cut(s)	72, 719, 728, 783
HpaII	CCGG	1 cut(s)	723
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	6 cut(s)	150, 199, 312, 485, 1023, 1057
Hpy188III	TCNNGA	5 cut(s)	218, 614, 723, 986, 1091
Hpy8I	GTNNAC	1 cut(s)	429
HpyAV	CCTTC	1 cut(s)	895
HpyCH4III	ACNGT	1 cut(s)	851
HpyCH4V	TGCA	3 cut(s)	494, 635, 947
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 284, 394, 500, 509, 546
HpyF3I	CTNAG	2 cut(s)	147, 936
Hsp92II	CATG	9 cut(s)	131, 261, 287, 323, 539, 548, 802, 865, 947
HspAI	GCGC	2 cut(s)	83, 540
Kpn2I	TCCGGA	1 cut(s)	722
KpnI	GGTACC	1 cut(s)	885
Kzo9I	GATC	9 cut(s)	58, 101, 166, 559, 574, 586, 608, 949, 1057
LmnI	GCTCC	4 cut(s)	19, 244, 671, 1021
Lsp1109I	GCAGC	2 cut(s)	478, 880
MaeI	CTAG	5 cut(s)	93, 438, 614, 638, 758
MaeIII	GTNAC	1 cut(s)	1070
MalI	GATC	9 cut(s)	60, 103, 168, 561, 576, 588, 610, 951, 1059
MboI	GATC	9 cut(s)	58, 101, 166, 559, 574, 586, 608, 949, 1057
MboII	GAAGA	6 cut(s)	20, 161, 292, 295, 366, 829
MflI	RGATCY	3 cut(s)	166, 608, 949
MluCI	AATT	7 cut(s)	459, 468, 531, 687, 743, 763, 834
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	664
MnlI	CCTC	6 cut(s)	36, 321, 444, 474, 931, 1029
MroI	TCCGGA	1 cut(s)	722
MseI	TTAA	3 cut(s)	446, 569, 1011
MspI	CCGG	1 cut(s)	723
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	6 cut(s)	11, 284, 394, 500, 509, 546
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	9 cut(s)	58, 101, 166, 559, 574, 586, 608, 949, 1057
NlaIII	CATG	9 cut(s)	131, 261, 287, 323, 539, 548, 802, 865, 947
NlaIV	GGNNCC	2 cut(s)	366, 883
NspI	RCATGY	3 cut(s)	131, 287, 323
PctI	GAATGC	1 cut(s)	505
PfeI	GAWTC	3 cut(s)	719, 728, 783
PflMI	CCANNNNNTGG	1 cut(s)	1067
PkrI	GCNGC	2 cut(s)	493, 895
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	366, 883
PspPI	GGNCC	2 cut(s)	748, 940
PsuI	RGATCY	3 cut(s)	166, 608, 949
RsaI	GTAC	5 cut(s)	282, 791, 858, 883, 1031
RsaNI	GTAC	5 cut(s)	281, 790, 857, 882, 1030
SaqAI	TTAA	3 cut(s)	446, 569, 1011
SatI	GCNGC	2 cut(s)	492, 894
Sau3AI	GATC	9 cut(s)	58, 101, 166, 559, 574, 586, 608, 949, 1057
Sau96I	GGNCC	2 cut(s)	748, 940
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	8 cut(s)	16, 366, 406, 514, 555, 655, 887, 1011
Sse9I	AATT	7 cut(s)	459, 468, 531, 687, 743, 763, 834
SspMI	CTAG	5 cut(s)	93, 438, 614, 638, 758
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	851
TaqI	TCGA	3 cut(s)	558, 589, 781
TasI	AATT	7 cut(s)	459, 468, 531, 687, 743, 763, 834
TatI	WGTACW	3 cut(s)	280, 789, 1029
TfiI	GAWTC	3 cut(s)	719, 728, 783
Tru1I	TTAA	3 cut(s)	446, 569, 1011
Tru9I	TTAA	3 cut(s)	446, 569, 1011
TscAI	CASTG	4 cut(s)	193, 883, 1081, 1105
TseI	GCWGC	2 cut(s)	491, 893
TspDTI	ATGAA	4 cut(s)	471, 524, 830, 877
TspRI	CASTG	4 cut(s)	193, 883, 1081, 1105
Van91I	CCANNNNNTGG	1 cut(s)	1067
XapI	RAATTY	2 cut(s)	459, 531
XbaI	TCTAGA	1 cut(s)	613
XceI	RCATGY	3 cut(s)	131, 287, 323
XspI	CTAG	5 cut(s)	93, 438, 614, 638, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.