Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00582

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Forward (+)

7652 .. 11095

Gene Structure 3444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G013050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCTAACCAAGCTCCCACACTTCCTCTTCTTACTCCTTACAAAATGGGAAAGTTTGATCTTTCTCACAGAGTTGTTTTAGCGCCATTGACCAGACAGAGATCATATGGAAATGTTCCCCAGCCACATGCCATCTTATATTACTCTCAGAGAACATCTAAAGGAGGTCTTCTCATAACTGAAGCCACTGGAGTTTCTGACACAGCACAAGGGTATCCAGATACTCCTGGTATATGGACAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGCTAAAGGGGGTATCTTCTTCTGTCAGATTGTGCATGTGGGGAGGGTTTCAAATACTGGCTTTCAGCCAAATGGGCAGGTTCCCATCTCTTCTACTGAGAAGCCCCTAACCCCCCAAATACGATCTAATGGCATTGATGTTGCGCAAACACCTCCAAGACGATTAAGGACAGATGAAATTCCTCAAATTGTCAATGATTTTAGACTTGCTGCAAGGAATGCTATGGAAGCTGGCTTTGATGGGGTTGAAATTCATGGCGCCCATGGCTACCTTATCGATCAGTTTTTAAAAGATCAAGTAAATGATCGAACAGACCAATATGGTGGATCTCTAGAAAAGCGTTGCCGATTTGCACTAGACATTGTTGAAGCTGTTGTCAATGAGATAGGAGCAGATAAAGTTGGAATTAGATTATCTCCATTTGCTGACTATATGGAATCCGGAGATTCTAATCCAAAGGAATTGGGCCTTTATCTAGTCAATTCCTTGAACAAATATCGAATCCTGTACTGCCACATCGTTGAGCCAAGAATGAAGACACTTGGAGAAAAAAGTGAATGTCCCCACAGTCTCGTACCCATGAGAAAGGCTTTCAATGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGAAAGATGGGAACAATGCTGTGGCTGAGGGCCGTGCAGATCTTATCGCTTTTGGTCGTTGGTTCTTGGCTAATCCAGATTTGCCAAAGAGGTTTGAGCTTAATGCACCTCTAAATAAGTACAACAGAGATACATTCTACATATCTGATCCGGTTCTTGGTTACACTGATTATCCATTTCTTGACAGCGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

369

Amino Acids

40.95

Weight (kDa)

7.68

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	10 - 342	3.3e-85	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	429
Acc36I	ACCTGC	1 cut(s)	352
Acc65I	GGTACC	1 cut(s)	884
AccB1I	GGYRCC	2 cut(s)	542, 884
AccIII	TCCGGA	1 cut(s)	725
AclWI	GGATC	2 cut(s)	619, 1055
AcsI	RAATTY	2 cut(s)	462, 534
AcuI	CTGAAG	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	543
AfaI	GTAC	5 cut(s)	282, 794, 861, 886, 1034
AfeI	AGCGCT	1 cut(s)	1102
AfiI	CCNNNNNNNGG	1 cut(s)	1070
AgsI	TTSAA	6 cut(s)	254, 336, 533, 653, 775, 880
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	4 cut(s)	14, 515, 656, 1012
AluI	AGCT	4 cut(s)	14, 515, 656, 1012
Alw26I	GTCTC	1 cut(s)	860
AlwI	GGATC	2 cut(s)	619, 1055
Aor13HI	TCCGGA	1 cut(s)	725
Aor51HI	AGCGCT	1 cut(s)	1102
AoxI	GGCC	2 cut(s)	751, 943
ApeKI	GCWGC	3 cut(s)	494, 896, 1103
ApoI	RAATTY	2 cut(s)	462, 534
Asp718I	GGTACC	1 cut(s)	884
AspLEI	GCGC	4 cut(s)	85, 430, 545, 1103
AspS9I	GGNCC	2 cut(s)	751, 943
BaeI	ACNNNNGTAYC	2 cut(s)	197, 230
BanI	GGYRCC	2 cut(s)	542, 884
BbsI	GAAGAC	2 cut(s)	161, 827
BbvCI	CCTCAGC	1 cut(s)	939
BbvI	GCAGC	3 cut(s)	481, 883, 1090
BccI	CCATC	4 cut(s)	140, 377, 518, 914
BceAI	ACGGC	1 cut(s)	930
BciT130I	CCWGG	1 cut(s)	228
BciVI	GTATCC	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	860
BfaI	CTAG	3 cut(s)	617, 641, 761
BfoI	RGCGCY	3 cut(s)	86, 546, 1104
BfuAI	ACCTGC	1 cut(s)	352
BfuI	GTATCC	1 cut(s)	225
BglI	GCCNNNNNGGC	1 cut(s)	358
BglII	AGATCT	1 cut(s)	952
BisI	GCNGC	3 cut(s)	495, 897, 1104
BlsI	GCNGC	3 cut(s)	496, 898, 1105
Bme1390I	CCNGG	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	751, 943
BmiI	GGNNCC	3 cut(s)	366, 544, 886
BmrFI	CCNGG	1 cut(s)	228
BpiI	GAAGAC	2 cut(s)	161, 827
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
BpmI	CTGGAG	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	939
Bsa29I	ATCGAT	1 cut(s)	561
BsaBI	GATNNNNATC	1 cut(s)	735
BsaHI	GRCGYC	1 cut(s)	543
BsaJI	CCNNGG	1 cut(s)	547
BsaWI	WCCGGW	2 cut(s)	725, 1063
Bsc4I	CCNNNNNNNGG	1 cut(s)	1070
Bse1I	ACTGG	2 cut(s)	193, 346
Bse3DI	GCAATG	1 cut(s)	891
Bse8I	GATNNNNATC	1 cut(s)	735
BseAI	TCCGGA	1 cut(s)	725
BseBI	CCWGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	547
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	1 cut(s)	1070
BseMI	GCAATG	1 cut(s)	891
BseMII	CTCAG	3 cut(s)	161, 372, 930
BseNI	ACTGG	2 cut(s)	193, 346
BseXI	GCAGC	3 cut(s)	481, 883, 1090
BseYI	CCCAGC	1 cut(s)	120
BsgI	GTGCAG	1 cut(s)	969
BshFI	GGCC	2 cut(s)	753, 945
BshNI	GGYRCC	2 cut(s)	542, 884
BshVI	ATCGAT	1 cut(s)	561
BsiSI	CCGG	2 cut(s)	726, 1064
BslFI	GGGAC	1 cut(s)	831
BslI	CCNNNNNNNGG	1 cut(s)	1070
BsmAI	GTCTC	1 cut(s)	860
BsmFI	GGGAC	1 cut(s)	831
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	2 cut(s)	753, 945
Bsp13I	TCCGGA	1 cut(s)	725
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	9 cut(s)	58, 101, 407, 562, 577, 589, 611, 952, 1060
Bsp19I	CCATGG	1 cut(s)	547
BspANI	GGCC	2 cut(s)	753, 945
BspCNI	CTCAG	3 cut(s)	160, 373, 931
BspDI	ATCGAT	1 cut(s)	561
BspEI	TCCGGA	1 cut(s)	725
BspLI	GGNNCC	3 cut(s)	366, 544, 886
BspMI	ACCTGC	1 cut(s)	352
BspPI	GGATC	2 cut(s)	619, 1055
BspT107I	GGYRCC	2 cut(s)	542, 884
BsrDI	GCAATG	1 cut(s)	891
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	193, 346
BssECI	CCNNGG	1 cut(s)	547
BssMI	GATC	9 cut(s)	58, 101, 407, 562, 577, 589, 611, 952, 1060
BssNI	GRCGYC	1 cut(s)	543
BssT1I	CCWWGG	1 cut(s)	547
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	854
Bst6I	CTCTTC	2 cut(s)	33, 379
BstACI	GRCGYC	1 cut(s)	543
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstAUI	TGTACA	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	517
BstDEI	CTNAG	3 cut(s)	147, 381, 939
BstDSI	CCRYGG	1 cut(s)	547
BstH2I	RGCGCY	3 cut(s)	86, 546, 1104
BstHHI	GCGC	4 cut(s)	85, 430, 545, 1103
BstKTI	GATC	9 cut(s)	61, 104, 410, 565, 580, 592, 614, 955, 1063
BstMAI	GTCTC	1 cut(s)	860
BstMBI	GATC	9 cut(s)	58, 101, 407, 562, 577, 589, 611, 952, 1060
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 284, 358, 503, 512, 549
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	3 cut(s)	131, 287, 323
BstSCI	CCNGG	1 cut(s)	226
BstV1I	GCAGC	3 cut(s)	481, 883, 1090
BstV2I	GAAGAC	2 cut(s)	161, 827
BstX2I	RGATCY	2 cut(s)	611, 952
BstXI	CCANNNNNNTGG	1 cut(s)	608
BstYI	RGATCY	2 cut(s)	611, 952
Bsu15I	ATCGAT	1 cut(s)	561
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	753, 945
BsuTUI	ATCGAT	1 cut(s)	561
BtgI	CCRYGG	1 cut(s)	547
BtsIMutI	CAGTG	2 cut(s)	186, 1077
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	517
CfoI	GCGC	4 cut(s)	85, 430, 545, 1103
Cfr13I	GGNCC	2 cut(s)	751, 943
ClaI	ATCGAT	1 cut(s)	561
Csp6I	GTAC	5 cut(s)	281, 793, 860, 885, 1033
CviAII	CATG	7 cut(s)	128, 258, 284, 320, 539, 548, 865
CviQI	GTAC	5 cut(s)	281, 793, 860, 885, 1033
DdeI	CTNAG	3 cut(s)	147, 381, 939
DinI	GGCGCC	1 cut(s)	544
DpnI	GATC	9 cut(s)	60, 103, 409, 564, 579, 591, 613, 954, 1062
DpnII	GATC	9 cut(s)	58, 101, 407, 562, 577, 589, 611, 952, 1060
DraI	TTTAAA	1 cut(s)	573
Eam1104I	CTCTTC	2 cut(s)	33, 379
EarI	CTCTTC	2 cut(s)	33, 379
Eco130I	CCWWGG	1 cut(s)	547
Eco47III	AGCGCT	1 cut(s)	1102
Eco57I	CTGAAG	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	547
EgeI	GGCGCC	1 cut(s)	544
EheI	GGCGCC	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	7 cut(s)	131, 261, 287, 323, 542, 551, 868
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	1 cut(s)	831
FatI	CATG	7 cut(s)	127, 257, 283, 319, 538, 547, 864
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	3 cut(s)	495, 897, 1104
Fsp4HI	GCNGC	3 cut(s)	495, 897, 1104
FspBI	CTAG	3 cut(s)	617, 641, 761
FspI	TGCGCA	1 cut(s)	429
GlaI	GCGC	4 cut(s)	84, 429, 544, 1102
GluI	GCNGC	3 cut(s)	495, 897, 1104
GsaI	CCCAGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	210
HaeII	RGCGCY	3 cut(s)	86, 546, 1104
HaeIII	GGCC	2 cut(s)	753, 945
HapII	CCGG	2 cut(s)	726, 1064
HhaI	GCGC	4 cut(s)	85, 430, 545, 1103
Hin1I	GRCGYC	1 cut(s)	543
Hin1II	CATG	7 cut(s)	131, 261, 287, 323, 542, 551, 868
Hin6I	GCGC	4 cut(s)	83, 428, 543, 1101
HinP1I	GCGC	4 cut(s)	83, 428, 543, 1101
HinfI	GANTC	3 cut(s)	722, 731, 786
HpaII	CCGG	2 cut(s)	726, 1064
Hpy188I	TCNGA	4 cut(s)	150, 199, 312, 1060
Hpy188III	TCNNGA	5 cut(s)	218, 617, 726, 989, 1094
HpyAV	CCTTC	1 cut(s)	898
HpyCH4III	ACNGT	1 cut(s)	854
HpyCH4V	TGCA	5 cut(s)	319, 497, 638, 950, 1019
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 284, 358, 503, 512, 549
HpyF3I	CTNAG	3 cut(s)	147, 381, 939
Hsp92I	GRCGYC	1 cut(s)	543
Hsp92II	CATG	7 cut(s)	131, 261, 287, 323, 542, 551, 868
HspAI	GCGC	4 cut(s)	83, 428, 543, 1101
KasI	GGCGCC	1 cut(s)	542
Kpn2I	TCCGGA	1 cut(s)	725
KpnI	GGTACC	1 cut(s)	888
Kzo9I	GATC	9 cut(s)	58, 101, 407, 562, 577, 589, 611, 952, 1060
LmnI	GCTCC	3 cut(s)	19, 244, 674
Lsp1109I	GCAGC	3 cut(s)	481, 883, 1090
MaeI	CTAG	3 cut(s)	617, 641, 761
MaeIII	GTNAC	1 cut(s)	1073
MalI	GATC	9 cut(s)	60, 103, 409, 564, 579, 591, 613, 954, 1062
MboI	GATC	9 cut(s)	58, 101, 407, 562, 577, 589, 611, 952, 1060
MboII	GAAGA	6 cut(s)	20, 161, 292, 295, 366, 832
MflI	RGATCY	2 cut(s)	611, 952
MluCI	AATT	6 cut(s)	462, 471, 534, 690, 746, 766
Mly113I	GGCGCC	1 cut(s)	543
MmeI	TCCRAC	1 cut(s)	667
MnlI	CCTC	8 cut(s)	36, 158, 321, 447, 477, 934, 996, 1032
MroI	TCCGGA	1 cut(s)	725
MseI	TTAA	3 cut(s)	449, 572, 1014
MspI	CCGG	2 cut(s)	726, 1064
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	6 cut(s)	11, 284, 358, 503, 512, 549
NarI	GGCGCC	1 cut(s)	543
NcoI	CCATGG	1 cut(s)	547
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	9 cut(s)	58, 101, 407, 562, 577, 589, 611, 952, 1060
NlaIII	CATG	7 cut(s)	131, 261, 287, 323, 542, 551, 868
NlaIV	GGNNCC	3 cut(s)	366, 544, 886
NsbI	TGCGCA	1 cut(s)	429
NspI	RCATGY	3 cut(s)	131, 287, 323
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	3 cut(s)	722, 731, 786
PkrI	GCNGC	3 cut(s)	496, 898, 1105
PluTI	GGCGCC	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	3 cut(s)	366, 544, 886
PspPI	GGNCC	2 cut(s)	751, 943
PsuI	RGATCY	2 cut(s)	611, 952
RsaI	GTAC	5 cut(s)	282, 794, 861, 886, 1034
RsaNI	GTAC	5 cut(s)	281, 793, 860, 885, 1033
SaqAI	TTAA	3 cut(s)	449, 572, 1014
SatI	GCNGC	3 cut(s)	495, 897, 1104
Sau3AI	GATC	9 cut(s)	58, 101, 407, 562, 577, 589, 611, 952, 1060
Sau96I	GGNCC	2 cut(s)	751, 943
ScrFI	CCNGG	1 cut(s)	228
SfoI	GGCGCC	1 cut(s)	544
Sse9I	AATT	6 cut(s)	462, 471, 534, 690, 746, 766
SspDI	GGCGCC	1 cut(s)	542
SspMI	CTAG	3 cut(s)	617, 641, 761
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	1 cut(s)	854
TaqI	TCGA	3 cut(s)	561, 592, 784
TasI	AATT	6 cut(s)	462, 471, 534, 690, 746, 766
TatI	WGTACW	3 cut(s)	280, 792, 1032
TfiI	GAWTC	3 cut(s)	722, 731, 786
Tru1I	TTAA	3 cut(s)	449, 572, 1014
Tru9I	TTAA	3 cut(s)	449, 572, 1014
TscAI	CASTG	2 cut(s)	193, 1084
TseI	GCWGC	3 cut(s)	494, 896, 1103
TspDTI	ATGAA	4 cut(s)	474, 527, 833, 880
TspRI	CASTG	2 cut(s)	193, 1084
XapI	RAATTY	2 cut(s)	462, 534
XbaI	TCTAGA	1 cut(s)	616
XceI	RCATGY	3 cut(s)	131, 287, 323
XspI	CTAG	3 cut(s)	617, 641, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.