Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

16473930 .. 16475247

Gene Structure 1318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001501

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTTCCCCAGCACCTGCCATCTTTATTACTCTCAGAGAGCATCCAAAGGGGGTCTTCTCATAACTGAAGCCACTGGAGTTTCTGACACAGCACAAGGGTATCCAGATACCCCTGGTATATGGTCAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTCAATGCTGTACATGCTAAAGGGGGTGTCTTCTTCTGTCAGATTTGGCATGTGGGGAGGGTTTCAAATAGTGGCTTTCAGCCAGATGGGCAAGCTCCAATCTCTTCTACTGACAAGTACCTTACACCCCAAATAGGATCTAATGGTATTGATGTTTTGCAATTCACACCTCCAAGACGATTGAGGACAGATGAAATTCCTCAAATTGTCAATGATTTCAGACTTGCTGCAAGGAATGCTATGGAAGCTGACATTGTTGAACCTGTTGTCAACGAGATAGGAGCAGATAAAGTTGGAATTAAATTGTCTCCATTTGCCAACTATGTGGAATCCGGAGATTCTAATCCAAAGGAATTGGCCTTTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

175

Amino Acids

18.98

Weight (kDa)

5.33

Isoelectric Point (pI)

29.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	9 - 138	5.7e-25	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	23
AccIII	TCCGGA	1 cut(s)	488
AclWI	GGATC	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	351
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	2 cut(s)	168, 275
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	3 cut(s)	140, 222, 416
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	2 cut(s)	251, 404
AluI	AGCT	2 cut(s)	251, 404
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	1 cut(s)	301
AlwNI	CAGNNNCTG	1 cut(s)	15
Aor13HI	TCCGGA	1 cut(s)	488
AoxI	GGCC	1 cut(s)	513
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	351
BaeI	ACNNNNGTAYC	2 cut(s)	83, 116
BbsI	GAAGAC	2 cut(s)	47, 178
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	2 cut(s)	27, 236
BciT130I	CCWGG	1 cut(s)	114
BciVI	GTATCC	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	468
BfaI	CTAG	1 cut(s)	523
BfuAI	ACCTGC	1 cut(s)	23
BfuI	GTATCC	1 cut(s)	111
BglI	GCCNNNNNGGC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	385
Bme1390I	CCNGG	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	1 cut(s)	50
BpiI	GAAGAC	2 cut(s)	47, 178
BpmI	CTGGAG	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	112
BsaWI	WCCGGW	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	79
Bse8I	GATNNNNATC	1 cut(s)	498
BseAI	TCCGGA	1 cut(s)	488
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	1 cut(s)	41
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	370
BseYI	CCCAGC	1 cut(s)	8
BshFI	GGCC	1 cut(s)	515
BsiSI	CCGG	1 cut(s)	489
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	468
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	515
Bsp13I	TCCGGA	1 cut(s)	488
Bsp1407I	TGTACA	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	293
BspANI	GGCC	1 cut(s)	515
BspCNI	CTCAG	1 cut(s)	46
BspEI	TCCGGA	1 cut(s)	488
BspMI	ACCTGC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	301
BsrGI	TGTACA	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	114
Bst6I	CTCTTC	1 cut(s)	265
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstAUI	TGTACA	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	41
BstKTI	GATC	1 cut(s)	296
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 244, 392, 401
BstNI	CCWGG	1 cut(s)	114
BstNSI	RCATGY	2 cut(s)	173, 209
BstSCI	CCNGG	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	370
BstV2I	GAAGAC	2 cut(s)	47, 178
BstX2I	RGATCY	1 cut(s)	293
BstXI	CCANNNNNNTGG	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	293
BsuI	GTATCC	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	515
BtsCI	GGATG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	72
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	249
CaiI	CAGNNNCTG	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	167, 274
CviAII	CATG	3 cut(s)	144, 170, 206
CviJI	RGCY	6 cut(s)	71, 231, 238, 251, 404, 515
CviKI_1	RGCY	6 cut(s)	71, 231, 238, 251, 404, 515
CviQI	GTAC	2 cut(s)	167, 274
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	112
FaeI	CATG	3 cut(s)	147, 173, 209
FaiI	YATR	8 cut(s)	62, 119, 121, 145, 171, 207, 398, 480
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FatI	CATG	3 cut(s)	143, 169, 205
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	1 cut(s)	28
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	1 cut(s)	523
GluI	GCNGC	1 cut(s)	384
GsaI	CCCAGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	515
HapII	CCGG	1 cut(s)	489
Hin1II	CATG	3 cut(s)	147, 173, 209
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	2 cut(s)	485, 494
HpaII	CCGG	1 cut(s)	489
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	4 cut(s)	36, 85, 198, 377
Hpy188III	TCNNGA	2 cut(s)	104, 489
Hpy8I	GTNNAC	1 cut(s)	427
HpyCH4V	TGCA	2 cut(s)	316, 386
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 244, 392, 401
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	147, 173, 209
Kpn2I	TCCGGA	1 cut(s)	488
Kzo9I	GATC	1 cut(s)	293
LmnI	GCTCC	3 cut(s)	130, 256, 437
LpnPI	CCDG	9 cut(s)	22, 28, 60, 99, 117, 126, 252, 432, 502
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	1 cut(s)	523
MalI	GATC	1 cut(s)	295
MboI	GATC	1 cut(s)	293
MboII	GAAGA	4 cut(s)	47, 178, 181, 252
MflI	RGATCY	1 cut(s)	293
MluCI	AATT	6 cut(s)	317, 351, 360, 453, 458, 509
MmeI	TCCRAC	1 cut(s)	430
MnlI	CCTC	4 cut(s)	207, 333, 336, 366
MroI	TCCGGA	1 cut(s)	488
MseI	TTAA	1 cut(s)	456
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	114
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	4 cut(s)	170, 244, 392, 401
NdeII	GATC	1 cut(s)	293
NlaIII	CATG	3 cut(s)	147, 173, 209
NspI	RCATGY	2 cut(s)	173, 209
PaqCI	CACCTGC	1 cut(s)	23
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	485, 494
PkrI	GCNGC	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	112
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	293
RsaI	GTAC	2 cut(s)	168, 275
RsaNI	GTAC	2 cut(s)	167, 274
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	114
SetI	ASST	6 cut(s)	17, 253, 279, 328, 406, 421
SfaNI	GCATC	1 cut(s)	50
Sse9I	AATT	6 cut(s)	317, 351, 360, 453, 458, 509
SspMI	CTAG	1 cut(s)	523
StyD4I	CCNGG	1 cut(s)	112
TasI	AATT	6 cut(s)	317, 351, 360, 453, 458, 509
TatI	WGTACW	1 cut(s)	166
TfiI	GAWTC	2 cut(s)	485, 494
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	1 cut(s)	79
TseI	GCWGC	1 cut(s)	383
TspDTI	ATGAA	1 cut(s)	363
TspRI	CASTG	1 cut(s)	79
XapI	RAATTY	1 cut(s)	351
XceI	RCATGY	2 cut(s)	173, 209
XspI	CTAG	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.