Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002822.1

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

23322 .. 25352

Gene Structure 2031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002822.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atgataacttttgttctcaatgttacacctgccatcttattttactctcagagagcatccaaagggggtcttctcataactgaagccactggagtttctgacacagcacaagggtattcagatactcctggtatatggacaagggagcaagttgaagcatggaaacccattgtcaatgctgtacatgctaaagggggtgtcttcttttgtcagatttggcatgtggggagggtttcaaatagtggctttcagccagatgggcaagctccaatctcttctactgacacgtccctaagcccccaaagaggatctaatggtattgatgttatgcaattcacacctccaagacgattaaggacagatgaaattcctcaaattgtcaatgatttcagacttgctgcaaggaatgccatggaagctggctttgatggagttgaaattcatggcgccaatggctaccttatagatcagtttttaaaagatcaagtaaatgatcgaacagaccaatatggtggatctctagaaaagcgttgccgatttgcactagacattgttgaagctgttgtcaatgagataggagcagataaagttggagttagattatctccatttgccgactatatggaatctggagattctaatccaaaggaattgggcctttatctagtcaattccttgaacaaatatggaatcctgtactgccacatggttgagccaagaatgaagacacttggagaaaaaattgaatgtccccagagtctcgtacccatgagaaaggcttttaatggtaccttcattgctgctggtggttttgacagggaagatgggaacaatgctgtggctgagggacgtgcagatcttattgcttttggtcgttggttcttggctaatccagctttgccaaagagatttgagcttaatgctcctctaaataagtacatcagagatacattctacatatctgatccggttcttggttacactgattatccatttcttgacagcactgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

337

Amino Acids

37.21

Weight (kDa)

5.26

Isoelectric Point (pI)

34.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	37
Acc36I	ACCTGC	1 cut(s)	37
Acc65I	GGTACC	1 cut(s)	788
AccB1I	GGYRCC	2 cut(s)	446, 788
AclWI	GGATC	3 cut(s)	316, 523, 959
AcsI	RAATTY	2 cut(s)	366, 438
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	5 cut(s)	183, 698, 765, 790, 938
AfiI	CCNNNNNNNGG	2 cut(s)	305, 974
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	6 cut(s)	155, 237, 437, 557, 679, 746
AjiI	CACGTC	2 cut(s)	288, 851
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	5 cut(s)	266, 419, 560, 896, 916
AluI	AGCT	5 cut(s)	266, 419, 560, 896, 916
Alw26I	GTCTC	1 cut(s)	764
AlwI	GGATC	3 cut(s)	316, 523, 959
AoxI	GGCC	1 cut(s)	655
ApeKI	GCWGC	2 cut(s)	398, 800
ApoI	RAATTY	2 cut(s)	366, 438
Asp718I	GGTACC	1 cut(s)	788
AspLEI	GCGC	1 cut(s)	449
AspS9I	GGNCC	1 cut(s)	655
BanI	GGYRCC	2 cut(s)	446, 788
BbsI	GAAGAC	3 cut(s)	62, 193, 731
BbvCI	CCTCAGC	1 cut(s)	843
BbvI	GCAGC	2 cut(s)	385, 787
BccI	CCATC	4 cut(s)	41, 251, 422, 818
BciT130I	CCWGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	764
BfaI	CTAG	3 cut(s)	521, 545, 665
BfoI	RGCGCY	1 cut(s)	450
BfuAI	ACCTGC	1 cut(s)	37
BglI	GCCNNNNNGGC	1 cut(s)	259
BglII	AGATCT	1 cut(s)	856
BisI	GCNGC	2 cut(s)	399, 801
BlsI	GCNGC	2 cut(s)	400, 802
Bme1390I	CCNGG	1 cut(s)	129
BmgBI	CACGTC	2 cut(s)	288, 851
BmgT120I	GGNCC	1 cut(s)	655
BmiI	GGNNCC	2 cut(s)	448, 790
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	65
BpiI	GAAGAC	3 cut(s)	62, 193, 731
BpmI	CTGGAG	2 cut(s)	111, 651
Bpu10I	CCTNAGC	2 cut(s)	293, 843
BsaBI	GATNNNNATC	1 cut(s)	639
BsaHI	GRCGYC	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	411
BsaWI	WCCGGW	1 cut(s)	967
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 974
Bse1I	ACTGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	795
Bse8I	GATNNNNATC	1 cut(s)	639
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	1 cut(s)	56
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	2 cut(s)	305, 974
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	2 cut(s)	62, 834
BseNI	ACTGG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	915
BseXI	GCAGC	2 cut(s)	385, 787
BsgI	GTGCAG	1 cut(s)	873
BshFI	GGCC	1 cut(s)	657
BshNI	GGYRCC	2 cut(s)	446, 788
BsiSI	CCGG	1 cut(s)	968
BslFI	GGGAC	3 cut(s)	274, 735, 861
BslI	CCNNNNNNNGG	2 cut(s)	305, 974
BsmAI	GTCTC	1 cut(s)	764
BsmFI	GGGAC	3 cut(s)	274, 735, 861
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	1 cut(s)	657
Bsp1407I	TGTACA	1 cut(s)	181
Bsp143I	GATC	7 cut(s)	308, 466, 481, 493, 515, 856, 964
Bsp19I	CCATGG	1 cut(s)	411
BspANI	GGCC	1 cut(s)	657
BspCNI	CTCAG	2 cut(s)	61, 835
BspLI	GGNNCC	2 cut(s)	448, 790
BspMI	ACCTGC	1 cut(s)	37
BspPI	GGATC	3 cut(s)	316, 523, 959
BspT107I	GGYRCC	2 cut(s)	446, 788
BsrDI	GCAATG	1 cut(s)	795
BsrGI	TGTACA	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	7 cut(s)	308, 466, 481, 493, 515, 856, 964
BssNI	GRCGYC	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	280
BstACI	GRCGYC	1 cut(s)	447
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstAUI	TGTACA	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	264, 421
BstDEI	CTNAG	3 cut(s)	48, 293, 843
BstDSI	CCRYGG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	56
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	7 cut(s)	311, 469, 484, 496, 518, 859, 967
BstMAI	GTCTC	1 cut(s)	764
BstMBI	GATC	7 cut(s)	308, 466, 481, 493, 515, 856, 964
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 259, 407, 416, 453, 893
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	2 cut(s)	188, 224
BstSCI	CCNGG	1 cut(s)	127
BstV1I	GCAGC	2 cut(s)	385, 787
BstV2I	GAAGAC	3 cut(s)	62, 193, 731
BstX2I	RGATCY	3 cut(s)	308, 515, 856
BstXI	CCANNNNNNTGG	1 cut(s)	512
BstYI	RGATCY	3 cut(s)	308, 515, 856
BsuRI	GGCC	1 cut(s)	657
BtgI	CCRYGG	1 cut(s)	411
BtrI	CACGTC	2 cut(s)	288, 851
BtsCI	GGATG	1 cut(s)	56
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	3 cut(s)	87, 981, 1005
BveI	ACCTGC	1 cut(s)	37
Cac8I	GCNNGC	2 cut(s)	264, 421
CfoI	GCGC	1 cut(s)	449
Cfr13I	GGNCC	1 cut(s)	655
Csp6I	GTAC	5 cut(s)	182, 697, 764, 789, 937
CviAII	CATG	7 cut(s)	159, 185, 221, 412, 443, 706, 769
CviQI	GTAC	5 cut(s)	182, 697, 764, 789, 937
DdeI	CTNAG	3 cut(s)	48, 293, 843
DinI	GGCGCC	1 cut(s)	448
DpnI	GATC	7 cut(s)	310, 468, 483, 495, 517, 858, 966
DpnII	GATC	7 cut(s)	308, 466, 481, 493, 515, 856, 964
DraI	TTTAAA	1 cut(s)	477
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	411
EgeI	GGCGCC	1 cut(s)	448
EheI	GGCGCC	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	7 cut(s)	162, 188, 224, 415, 446, 709, 772
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	3 cut(s)	274, 735, 861
FatI	CATG	7 cut(s)	158, 184, 220, 411, 442, 705, 768
Fnu4HI	GCNGC	2 cut(s)	399, 801
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	2 cut(s)	399, 801
FspBI	CTAG	3 cut(s)	521, 545, 665
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	2 cut(s)	399, 801
GsuI	CTGGAG	2 cut(s)	111, 651
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	657
HapII	CCGG	1 cut(s)	968
HhaI	GCGC	1 cut(s)	449
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	7 cut(s)	162, 188, 224, 415, 446, 709, 772
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HinfI	GANTC	4 cut(s)	626, 635, 690, 757
HpaII	CCGG	1 cut(s)	968
Hpy188I	TCNGA	7 cut(s)	51, 100, 121, 213, 392, 944, 964
Hpy188III	TCNNGA	3 cut(s)	521, 630, 998
HpyAV	CCTTC	1 cut(s)	802
HpyCH4IV	ACGT	2 cut(s)	287, 850
HpyCH4V	TGCA	4 cut(s)	331, 401, 542, 854
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 259, 407, 416, 453, 893
HpyF3I	CTNAG	3 cut(s)	48, 293, 843
HpySE526I	ACGT	2 cut(s)	287, 850
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	7 cut(s)	162, 188, 224, 415, 446, 709, 772
HspAI	GCGC	1 cut(s)	447
KasI	GGCGCC	1 cut(s)	446
KpnI	GGTACC	1 cut(s)	792
Kzo9I	GATC	7 cut(s)	308, 466, 481, 493, 515, 856, 964
LmnI	GCTCC	4 cut(s)	145, 271, 578, 928
Lsp1109I	GCAGC	2 cut(s)	385, 787
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	3 cut(s)	521, 545, 665
MaeII	ACGT	2 cut(s)	287, 850
MaeIII	GTNAC	2 cut(s)	22, 977
MalI	GATC	7 cut(s)	310, 468, 483, 495, 517, 858, 966
MboI	GATC	7 cut(s)	308, 466, 481, 493, 515, 856, 964
MboII	GAAGA	5 cut(s)	62, 193, 267, 736, 833
MflI	RGATCY	3 cut(s)	308, 515, 856
MluCI	AATT	7 cut(s)	332, 366, 375, 438, 650, 670, 741
Mly113I	GGCGCC	1 cut(s)	447
MlyI	GAGTC	1 cut(s)	766
MmeI	TCCRAC	1 cut(s)	571
MnlI	CCTC	6 cut(s)	222, 299, 351, 381, 838, 936
MseI	TTAA	4 cut(s)	353, 476, 783, 918
MspI	CCGG	1 cut(s)	968
MspR9I	CCNGG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	6 cut(s)	185, 259, 407, 416, 453, 893
NarI	GGCGCC	1 cut(s)	447
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	7 cut(s)	308, 466, 481, 493, 515, 856, 964
NlaIII	CATG	7 cut(s)	162, 188, 224, 415, 446, 709, 772
NlaIV	GGNNCC	2 cut(s)	448, 790
NspI	RCATGY	2 cut(s)	188, 224
PaqCI	CACCTGC	1 cut(s)	37
PctI	GAATGC	1 cut(s)	412
PfeI	GAWTC	3 cut(s)	626, 635, 690
PkrI	GCNGC	2 cut(s)	400, 802
PleI	GAGTC	1 cut(s)	765
PluTI	GGCGCC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	765
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	2 cut(s)	448, 790
PspPI	GGNCC	1 cut(s)	655
PsuI	RGATCY	3 cut(s)	308, 515, 856
RsaI	GTAC	5 cut(s)	183, 698, 765, 790, 938
RsaNI	GTAC	5 cut(s)	182, 697, 764, 789, 937
SaqAI	TTAA	4 cut(s)	353, 476, 783, 918
SatI	GCNGC	2 cut(s)	399, 801
Sau3AI	GATC	7 cut(s)	308, 466, 481, 493, 515, 856, 964
Sau96I	GGNCC	1 cut(s)	655
SchI	GAGTC	1 cut(s)	766
ScrFI	CCNGG	1 cut(s)	129
SfaNI	GCATC	1 cut(s)	65
SfoI	GGCGCC	1 cut(s)	448
Sse9I	AATT	7 cut(s)	332, 366, 375, 438, 650, 670, 741
SspDI	GGCGCC	1 cut(s)	446
SspMI	CTAG	3 cut(s)	521, 545, 665
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	411
TaiI	ACGT	2 cut(s)	290, 853
TaqI	TCGA	1 cut(s)	496
TasI	AATT	7 cut(s)	332, 366, 375, 438, 650, 670, 741
TatI	WGTACW	3 cut(s)	181, 696, 936
TfiI	GAWTC	3 cut(s)	626, 635, 690
Tru1I	TTAA	4 cut(s)	353, 476, 783, 918
Tru9I	TTAA	4 cut(s)	353, 476, 783, 918
TscAI	CASTG	3 cut(s)	94, 988, 1012
TseI	GCWGC	2 cut(s)	398, 800
TspDTI	ATGAA	4 cut(s)	378, 431, 737, 784
TspRI	CASTG	3 cut(s)	94, 988, 1012
XapI	RAATTY	2 cut(s)	366, 438
XbaI	TCTAGA	1 cut(s)	520
XceI	RCATGY	2 cut(s)	188, 224
XspI	CTAG	3 cut(s)	521, 545, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.