Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Forward (+)

23607719 .. 23611069

Gene Structure 3351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGGTGAACAAGCTTCCACACTTCCTCTTCTTACTCCTTACGAGTTGGGAAAGTTTGATCTTTCTCATAGAGTTGTTTTAGCTCCCTTGACTAGACAGAGATCATATGGAAATGTTCCCCAGCCACATGCCATCTTGTATTACTCTCAGAGAACATCCAAAGGGGGTCTTCTCATAACTGAAGCCACGGATATTTCTAAGACAGCACAAGGGTATCTAGATACTCCTGGTATATGGACAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTCAGTGCGGTACATGCTAAAGGAGGTGTCTTCTTCTGTCAGATTTGGCATGTGGGGAGGGTTTCAAATAGTGGCTTTCAGCCAGATGGACAAGCCCCAATCTCTTCTACTGACAAGGCCCTAAAACCACAAATAGGATCTAATGGAATTGACGTTGAGGAATTCACACCTCCAAGACGATTAAGGACAGATGAAATTCCTCAAATCGTCAATGATTTTAGACTTGCTGCAAGGAATGCAATGGAAGCTGGCTTTGATGGGGTTGAAATTCATGGTGCCCATGGCTACCTTATCGATCAGTTTTTAAAAGATGAAGTAAATGACCGAACAGACCAATATGGTGGATCTCTAGAAAATCGTTGCCGATTTGCACTAGAAATTGTTGAAGCTGTTGTAAATGAGATAGGAGCAGATAGAGTTGGAATCAGATTCTCTCCATTTGCCAACTATATGGAATCCGGAGATTCTAATCCAATGGATTTGGGCCTTTATCTAGTCAATTCCTTGAACAAATATGGAATCCTGTACTGCCACATGGTTGAGCCAAGAATGAAGACACTTGGAGAAAAAAGTGAATGTCCCCACAGTCTTGTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTGCTGGTGGTTTTGACAGGGAAGATGGAAACAATGCTGTGGTTGAGGGTCGTGCAGATCTTATTGTTTTTGGTCGGTTGTTCTTAGCTAATCCTGATTTGCCCAAGAGGTTTGAGCTTAATGCTCCTTTAAACAAGTACATCAGAAAGACATTCTACATATCTGATCCGGTTCTTGGCTACACTGATTATCCATTTCTTGACAGCAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

371

Amino Acids

41.1

Weight (kDa)

5.68

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	10 - 343	4.2e-86	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	887
AccB1I	GGYRCC	2 cut(s)	545, 887
AccIII	TCCGGA	1 cut(s)	728
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	3 cut(s)	415, 622, 1058
AcsI	RAATTY	3 cut(s)	431, 465, 537
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	5 cut(s)	282, 797, 864, 889, 1037
AfiI	CCNNNNNNNGG	2 cut(s)	404, 1073
AgsI	TTSAA	5 cut(s)	254, 336, 536, 656, 778
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	6 cut(s)	14, 83, 518, 659, 986, 1015
AluI	AGCT	6 cut(s)	14, 83, 518, 659, 986, 1015
AlwI	GGATC	3 cut(s)	415, 622, 1058
Aor13HI	TCCGGA	1 cut(s)	728
AoxI	GGCC	2 cut(s)	387, 754
ApeKI	GCWGC	2 cut(s)	497, 899
ApoI	RAATTY	3 cut(s)	431, 465, 537
Asp718I	GGTACC	1 cut(s)	887
AspS9I	GGNCC	2 cut(s)	388, 754
AsuHPI	GGTGA	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	550
BaeI	ACNNNNGTAYC	2 cut(s)	197, 230
BanI	GGYRCC	2 cut(s)	545, 887
BbsI	GAAGAC	3 cut(s)	161, 292, 830
BbvI	GCAGC	2 cut(s)	484, 886
BccI	CCATC	4 cut(s)	140, 350, 521, 917
BciT130I	CCWGG	1 cut(s)	228
BfaI	CTAG	5 cut(s)	93, 218, 620, 644, 764
BglII	AGATCT	1 cut(s)	955
BisI	GCNGC	2 cut(s)	498, 900
BlsI	GCNGC	2 cut(s)	499, 901
Bme1390I	CCNGG	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	388, 754
BmiI	GGNNCC	2 cut(s)	547, 889
BmrFI	CCNGG	1 cut(s)	228
BpiI	GAAGAC	3 cut(s)	161, 292, 830
Bsa29I	ATCGAT	1 cut(s)	564
BsaBI	GATNNNNATC	1 cut(s)	738
BsaJI	CCNNGG	2 cut(s)	186, 550
BsaWI	WCCGGW	2 cut(s)	728, 1066
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 1073
Bse3DI	GCAATG	2 cut(s)	516, 894
Bse8I	GATNNNNATC	1 cut(s)	738
BseAI	TCCGGA	1 cut(s)	728
BseBI	CCWGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	564
BseDI	CCNNGG	2 cut(s)	186, 550
BseGI	GGATG	1 cut(s)	155
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	2 cut(s)	404, 1073
BseMI	GCAATG	2 cut(s)	516, 894
BseMII	CTCAG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	550
BseXI	GCAGC	2 cut(s)	484, 886
BseYI	CCCAGC	1 cut(s)	120
BsgI	GTGCAG	1 cut(s)	972
BshFI	GGCC	2 cut(s)	389, 756
BshNI	GGYRCC	2 cut(s)	545, 887
BshVI	ATCGAT	1 cut(s)	564
BsiSI	CCGG	2 cut(s)	729, 1067
BslFI	GGGAC	1 cut(s)	834
BslI	CCNNNNNNNGG	2 cut(s)	404, 1073
BsmFI	GGGAC	1 cut(s)	834
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	2 cut(s)	389, 756
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp13I	TCCGGA	1 cut(s)	728
Bsp143I	GATC	7 cut(s)	58, 101, 407, 565, 614, 955, 1063
Bsp19I	CCATGG	1 cut(s)	550
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	2 cut(s)	389, 756
BspCNI	CTCAG	1 cut(s)	160
BspDI	ATCGAT	1 cut(s)	564
BspEI	TCCGGA	1 cut(s)	728
BspLI	GGNNCC	2 cut(s)	547, 889
BspPI	GGATC	3 cut(s)	415, 622, 1058
BspT107I	GGYRCC	2 cut(s)	545, 887
BsrDI	GCAATG	2 cut(s)	516, 894
BssECI	CCNNGG	2 cut(s)	186, 550
BssMI	GATC	7 cut(s)	58, 101, 407, 565, 614, 955, 1063
BssT1I	CCWWGG	1 cut(s)	550
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	857
Bst6I	CTCTTC	2 cut(s)	33, 379
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	520
BstDEI	CTNAG	3 cut(s)	147, 198, 982
BstDSI	CCRYGG	2 cut(s)	186, 550
BstF5I	GGATG	1 cut(s)	155
BstKTI	GATC	7 cut(s)	61, 104, 410, 568, 617, 958, 1066
BstMBI	GATC	7 cut(s)	58, 101, 407, 565, 614, 955, 1063
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 506, 515
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	3 cut(s)	131, 287, 323
BstSCI	CCNGG	1 cut(s)	226
BstSLI	GKGCMC	1 cut(s)	550
BstV1I	GCAGC	2 cut(s)	484, 886
BstV2I	GAAGAC	3 cut(s)	161, 292, 830
BstX2I	RGATCY	3 cut(s)	407, 614, 955
BstXI	CCANNNNNNTGG	2 cut(s)	611, 721
BstYI	RGATCY	3 cut(s)	407, 614, 955
Bsu15I	ATCGAT	1 cut(s)	564
BsuRI	GGCC	2 cut(s)	389, 756
BsuTUI	ATCGAT	1 cut(s)	564
BtgI	CCRYGG	2 cut(s)	186, 550
BtsCI	GGATG	1 cut(s)	155
BtsI	GCAGTG	1 cut(s)	1111
BtsIMutI	CAGTG	3 cut(s)	280, 1080, 1111
Cac8I	GCNNGC	1 cut(s)	520
Cfr13I	GGNCC	2 cut(s)	388, 754
ClaI	ATCGAT	1 cut(s)	564
Csp6I	GTAC	5 cut(s)	281, 796, 863, 888, 1036
CviAII	CATG	8 cut(s)	128, 258, 284, 320, 542, 551, 805, 868
CviQI	GTAC	5 cut(s)	281, 796, 863, 888, 1036
DdeI	CTNAG	3 cut(s)	147, 198, 982
DpnI	GATC	7 cut(s)	60, 103, 409, 567, 616, 957, 1065
DpnII	GATC	7 cut(s)	58, 101, 407, 565, 614, 955, 1063
DraI	TTTAAA	2 cut(s)	576, 1029
Eam1104I	CTCTTC	2 cut(s)	33, 379
EarI	CTCTTC	2 cut(s)	33, 379
Eco130I	CCWWGG	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRI	GAATTC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	550
ErhI	CCWWGG	1 cut(s)	550
FaeI	CATG	8 cut(s)	131, 261, 287, 323, 545, 554, 808, 871
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	1 cut(s)	834
FatI	CATG	8 cut(s)	127, 257, 283, 319, 541, 550, 804, 867
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	498, 900
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	2 cut(s)	498, 900
FspBI	CTAG	5 cut(s)	93, 218, 620, 644, 764
GluI	GCNGC	2 cut(s)	498, 900
GsaI	CCCAGC	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	389, 756
HapII	CCGG	2 cut(s)	729, 1067
Hin1II	CATG	8 cut(s)	131, 261, 287, 323, 545, 554, 808, 871
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	5 cut(s)	693, 699, 725, 734, 789
HpaII	CCGG	2 cut(s)	729, 1067
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	5 cut(s)	150, 312, 698, 1043, 1063
Hpy188III	TCNNGA	5 cut(s)	218, 620, 729, 992, 1097
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	901
HpyCH4III	ACNGT	1 cut(s)	857
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	4 cut(s)	500, 509, 641, 953
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 506, 515
HpyF3I	CTNAG	3 cut(s)	147, 198, 982
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	8 cut(s)	131, 261, 287, 323, 545, 554, 808, 871
Kpn2I	TCCGGA	1 cut(s)	728
KpnI	GGTACC	1 cut(s)	891
Kzo9I	GATC	7 cut(s)	58, 101, 407, 565, 614, 955, 1063
LmnI	GCTCC	4 cut(s)	88, 244, 677, 1027
Lsp1109I	GCAGC	2 cut(s)	484, 886
MaeI	CTAG	5 cut(s)	93, 218, 620, 644, 764
MaeII	ACGT	1 cut(s)	423
MalI	GATC	7 cut(s)	60, 103, 409, 567, 616, 957, 1065
MboI	GATC	7 cut(s)	58, 101, 407, 565, 614, 955, 1063
MboII	GAAGA	7 cut(s)	20, 161, 292, 295, 366, 835, 932
MflI	RGATCY	3 cut(s)	407, 614, 955
MhlI	GDGCHC	1 cut(s)	550
MluCI	AATT	6 cut(s)	417, 431, 465, 537, 648, 769
MmeI	TCCRAC	1 cut(s)	670
MnlI	CCTC	8 cut(s)	36, 287, 321, 421, 450, 480, 937, 999
MroI	TCCGGA	1 cut(s)	728
MseI	TTAA	5 cut(s)	452, 575, 882, 1017, 1028
MspI	CCGG	2 cut(s)	729, 1067
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	3 cut(s)	284, 506, 515
NcoI	CCATGG	1 cut(s)	550
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	7 cut(s)	58, 101, 407, 565, 614, 955, 1063
NlaIII	CATG	8 cut(s)	131, 261, 287, 323, 545, 554, 808, 871
NlaIV	GGNNCC	2 cut(s)	547, 889
NspI	RCATGY	3 cut(s)	131, 287, 323
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	5 cut(s)	693, 699, 725, 734, 789
PkrI	GCNGC	2 cut(s)	499, 901
Psp6I	CCWGG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	547, 889
PspPI	GGNCC	2 cut(s)	388, 754
PsuI	RGATCY	3 cut(s)	407, 614, 955
RsaI	GTAC	5 cut(s)	282, 797, 864, 889, 1037
RsaNI	GTAC	5 cut(s)	281, 796, 863, 888, 1036
SaqAI	TTAA	5 cut(s)	452, 575, 882, 1017, 1028
SatI	GCNGC	2 cut(s)	498, 900
Sau3AI	GATC	7 cut(s)	58, 101, 407, 565, 614, 955, 1063
Sau96I	GGNCC	2 cut(s)	388, 754
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	550
Sse9I	AATT	6 cut(s)	417, 431, 465, 537, 648, 769
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	5 cut(s)	93, 218, 620, 644, 764
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	550
TaaI	ACNGT	1 cut(s)	857
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	1 cut(s)	564
TaqII	GACCGA	1 cut(s)	609
TasI	AATT	6 cut(s)	417, 431, 465, 537, 648, 769
TatI	WGTACW	2 cut(s)	795, 1035
TfiI	GAWTC	5 cut(s)	693, 699, 725, 734, 789
Tru1I	TTAA	5 cut(s)	452, 575, 882, 1017, 1028
Tru9I	TTAA	5 cut(s)	452, 575, 882, 1017, 1028
TscAI	CASTG	3 cut(s)	280, 1087, 1111
TseI	GCWGC	2 cut(s)	497, 899
TspDTI	ATGAA	5 cut(s)	477, 530, 597, 836, 883
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	3 cut(s)	280, 1087, 1111
XapI	RAATTY	3 cut(s)	431, 465, 537
XbaI	TCTAGA	2 cut(s)	217, 619
XceI	RCATGY	3 cut(s)	131, 287, 323
XspI	CTAG	5 cut(s)	93, 218, 620, 644, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.