Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000785

Physical Location & Seq

Genomic Coordinates Reverse (-)

50370562 .. 50373680

Gene Structure 3119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1402800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCTACCACCAATCAAGCTCAAGGAGCTGGTCCCACAATCCCTCTCCTTTCTCCTTACAAATTTGGAAAGTTCAATCTTTCTCATAGAGTTGTATTAGCACCATTGACTAGACAAAGATCATACGGAAATGTTCCTCAGCCGCATGCCATCTTATATTACTCACAGAGAACATCTAACGGGGGTCTTCTCATAGCTGAAGCCACTGGAGTTTCTGACACAGCTCAAGGGTACCCAGATACTCCCGGTATATGGACAAAGGAGCAAGTTGAAGCATGGAAACCCATTGTTGATGCTGTTCATGCTAAAGGTGGCATCTTCTTCTGTCAGATTTGGCATGTGGGGAGGGTTTCAAATACCGGGTTTCAGCCAAATGGGCAAGCTCCAATCTCTTCTACTGACAAGCCACTAACCCCCCAAATACGATCTAATGGCATTGATGTTGCTGATTTTTCTCCTCCAAGGCGATTAAGGACAGATGAAGTCCCACAAATAGTCAATGATTTCAGACTTGCTGCAAGGAACGCTATAGAAGCTGGCTTTGATGGAGTAGAAATTCATGGGGCCCATGGATACCTTATTGATCAGTTTCTAAAAGATCAAGTGAATGATCGAGCAGACCAATATGGGGGATCATTGGAGAATCGTTGTCGATTTGCTCTGGAAGTCGTTGAAGCTGTTGTTAATGAGATAGGAGCGGATAAAGTTGGAATTAGATTATCTCCATTTGCCAGCTATATGGAATCAGGGGATTCAGATCCGAAAGCGTTGGGCCTTTATCTGGCCAATTCGTTGAACAAATATGGGATCCTGTACTGCCATATGGTTGAGCCTAGGATGAAGACAGCTGGAGAAAAATGTGATAGCCCCCACAGTCTTGTACCCATGAGAAAGGCTTTTAATGGTACCTTCATTGCTGCTGGTGGTTATGACAGGGAAGATGGGAACAATGCTGTGGCTGAGGGCCGTGCAGATCTTATTGCTTATGGTCGTTGGTTCTTGGCTAACCCAGACTTGCCGAAGAGGTTTGAGCTTAATGCTCCTCTGAACAAGTACAACAGAAGCACATTCTACGTGTCTGAACCGGTTATTGGCTACACTGATTATCCGTTCCTTGACACCACTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

377

Amino Acids

41.31

Weight (kDa)

6.26

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	16 - 349	3.4e-87	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09400 AT1G09400 AT1G76680 AT1G76680 AT1G76690
fragaria_vesca	FvH4_5g32630 FvH4_5g32640 FvH4_5g32640 FvH4_5g32680 FvH4_5g32690 FvH4_5g32710
malus_domestica	MD15G1400600.v1.1 MD15G1400700.v1.1 MD15G1401100.v1.1 MD15G1402800.v1.1 MD15G1403000.v1.1
prunus_persica	Prupe.1G549100_v2.0.a1
pyrus_communis	pycom15g35920 pycom15g36030 pycom15g36050
rosa_chinensis	RchiOBHm_Chr7g0230251 RchiOBHm_Chr7g0230261 RchiOBHm_Chr7g0230291 RchiOBHm_Chr7g0230321 RchiOBHm_Chr7g0230331 RchiOBHm_Chr7g0230351
rosa_laevigata	RLG00000001499 RLG00000001500 RLG00000001501 RLG00000001502 RLG00000001503 RLG00000001504 RLG00000001505 RLG00000001506
rosa_multiflora	Rmu_co8106358.1_g000001 Rmu_sc0002541.1_g000035 Rmu_sc0002541.1_g000048 Rmu_sc0002822.1_g000008 Rmu_sc0002822.1_g000009 Rmu_sc0002822.1_g000018 Rmu_sc0003393.1_g000009 Rmu_sc0007103.1_g000020 Rmu_sc0008506.1_g000003 Rmu_sc0008506.1_g000009 Rmu_sc0008506.1_g000016 Rmu_sc0008506.1_g000023 Rmu_sc0033307.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230210 Rroxscaffold_3G00230220 Rroxscaffold_3G00230240 Rroxscaffold_3G00230250 Rroxscaffold_3G00230260 Rroxscaffold_3G00230270
rosa_rugosa	Rorug07G0230900 Rorug07G0231000 Rorug07G0260000
rosa_samantha	Rh7CG428100 Rh7CG428500 Rh7CG428600 Rh7CG428800 Rh7CG428900
rosa_wichuraiana	Rw0G011780 Rw0G012550 Rw0G012570 Rw0G013050 Rw0G022630 Rw0G022640 Rw0G022650 Rw7G034220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	231, 905
AccB1I	GGYRCC	2 cut(s)	231, 905
AccBSI	CCGCTC	1 cut(s)	698
AciI	CCGC	2 cut(s)	143, 698
AclWI	GGATC	4 cut(s)	640, 752, 802, 815
AcoI	YGGCCR	1 cut(s)	783
AcsI	RAATTY	2 cut(s)	62, 555
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	5 cut(s)	233, 815, 882, 907, 1055
AfiI	CCNNNNNNNGG	4 cut(s)	252, 628, 781, 1091
AflIII	ACRYGT	1 cut(s)	1074
AgeI	ACCGGT	1 cut(s)	1084
AgsI	TTSAA	5 cut(s)	76, 272, 354, 674, 796
AjuI	GAANNNNNNNTTGG	2 cut(s)	1074, 1106
AlwI	GGATC	4 cut(s)	640, 752, 802, 815
AoxI	GGCC	4 cut(s)	564, 772, 783, 964
ApaI	GGGCCC	1 cut(s)	568
ApeKI	GCWGC	2 cut(s)	515, 917
ApoI	RAATTY	2 cut(s)	62, 555
AsiGI	ACCGGT	1 cut(s)	1084
Asp718I	GGTACC	2 cut(s)	231, 905
AspA2I	CCTAGG	1 cut(s)	833
AspS9I	GGNCC	5 cut(s)	32, 564, 565, 772, 964
AsuC2I	CCSGG	2 cut(s)	246, 361
AvaII	GGWCC	1 cut(s)	32
AvrII	CCTAGG	1 cut(s)	833
BaeGI	GKGCMC	1 cut(s)	568
BalI	TGGCCA	1 cut(s)	785
BamHI	GGATCC	1 cut(s)	807
BanI	GGYRCC	2 cut(s)	231, 905
BanII	GRGCYC	1 cut(s)	568
BbsI	GAAGAC	2 cut(s)	179, 848
BbvCI	CCTCAGC	2 cut(s)	138, 960
BbvI	GCAGC	2 cut(s)	502, 904
BccI	CCATC	3 cut(s)	158, 539, 935
BceAI	ACGGC	1 cut(s)	951
BciVI	GTATCC	1 cut(s)	566
BclI	TGATCA	1 cut(s)	583
BcnI	CCSGG	2 cut(s)	246, 361
BfaI	CTAG	2 cut(s)	111, 834
BfmI	CTRYAG	1 cut(s)	528
BfuI	GTATCC	1 cut(s)	566
BglI	GCCNNNNNGGC	1 cut(s)	376
BglII	AGATCT	1 cut(s)	973
BisI	GCNGC	3 cut(s)	143, 516, 918
BlnI	CCTAGG	1 cut(s)	833
BlsI	GCNGC	3 cut(s)	144, 517, 919
Bme1390I	CCNGG	2 cut(s)	246, 361
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	5 cut(s)	32, 564, 565, 772, 964
BmiI	GGNNCC	6 cut(s)	34, 233, 565, 566, 809, 907
BmrFI	CCNGG	2 cut(s)	246, 361
BmsI	GCATC	2 cut(s)	283, 324
BpiI	GAAGAC	2 cut(s)	179, 848
BpmI	CTGGAG	2 cut(s)	228, 870
Bpu10I	CCTNAGC	2 cut(s)	138, 960
BpuEI	CTTGAG	2 cut(s)	6, 210
BpuMI	CCSGG	2 cut(s)	246, 361
BsaAI	YACGTR	1 cut(s)	1075
BsaBI	GATNNNNATC	1 cut(s)	756
BsaJI	CCNNGG	3 cut(s)	461, 568, 833
BsaWI	WCCGGW	1 cut(s)	1084
Bsc4I	CCNNNNNNNGG	4 cut(s)	252, 628, 781, 1091
Bse118I	RCCGGY	1 cut(s)	1084
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	912
Bse8I	GATNNNNATC	1 cut(s)	756
BseDI	CCNNGG	3 cut(s)	461, 568, 833
BseGI	GGATG	1 cut(s)	843
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	4 cut(s)	252, 628, 781, 1091
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	2 cut(s)	152, 951
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	2 cut(s)	447, 1032
BseSI	GKGCMC	1 cut(s)	568
BseXI	GCAGC	2 cut(s)	502, 904
BsgI	GTGCAG	1 cut(s)	990
BshFI	GGCC	4 cut(s)	566, 774, 785, 966
BshNI	GGYRCC	2 cut(s)	231, 905
BshTI	ACCGGT	1 cut(s)	1084
BsiSI	CCGG	3 cut(s)	246, 360, 1085
BslFI	GGGAC	2 cut(s)	18, 470
BslI	CCNNNNNNNGG	4 cut(s)	252, 628, 781, 1091
BsmFI	GGGAC	2 cut(s)	18, 470
BsnI	GGCC	4 cut(s)	566, 774, 785, 966
Bsp120I	GGGCCC	1 cut(s)	564
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp143I	GATC	9 cut(s)	119, 425, 583, 598, 610, 632, 757, 807, 973
Bsp19I	CCATGG	1 cut(s)	568
BspACI	CCGC	2 cut(s)	143, 698
BspANI	GGCC	4 cut(s)	566, 774, 785, 966
BspCNI	CTCAG	2 cut(s)	151, 952
BspLI	GGNNCC	6 cut(s)	34, 233, 565, 566, 809, 907
BspPI	GGATC	4 cut(s)	640, 752, 802, 815
BspT107I	GGYRCC	2 cut(s)	231, 905
BsrBI	CCGCTC	1 cut(s)	698
BsrDI	GCAATG	1 cut(s)	912
BsrFI	RCCGGY	1 cut(s)	1084
BsrI	ACTGG	1 cut(s)	211
BssAI	RCCGGY	1 cut(s)	1084
BssECI	CCNNGG	3 cut(s)	461, 568, 833
BssMI	GATC	9 cut(s)	119, 425, 583, 598, 610, 632, 757, 807, 973
BssT1I	CCWWGG	3 cut(s)	461, 568, 833
Bst4CI	ACNGT	1 cut(s)	875
Bst6I	CTCTTC	2 cut(s)	397, 1016
BstBAI	YACGTR	1 cut(s)	1075
BstC8I	GCNNGC	4 cut(s)	147, 381, 538, 733
BstDEI	CTNAG	2 cut(s)	138, 960
BstDSI	CCRYGG	1 cut(s)	568
BstF5I	GGATG	1 cut(s)	843
BstKTI	GATC	9 cut(s)	122, 428, 586, 601, 613, 635, 760, 810, 976
BstMBI	GATC	9 cut(s)	119, 425, 583, 598, 610, 632, 757, 807, 973
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 302, 376, 524, 533
BstNSI	RCATGY	2 cut(s)	149, 341
BstSCI	CCNGG	2 cut(s)	244, 359
BstSFI	CTRYAG	1 cut(s)	528
BstSLI	GKGCMC	1 cut(s)	568
BstV1I	GCAGC	2 cut(s)	502, 904
BstV2I	GAAGAC	2 cut(s)	179, 848
BstX2I	RGATCY	3 cut(s)	757, 807, 973
BstXI	CCANNNNNNTGG	1 cut(s)	739
BstYI	RGATCY	3 cut(s)	757, 807, 973
BsuI	GTATCC	1 cut(s)	566
BsuRI	GGCC	4 cut(s)	566, 774, 785, 966
BtgI	CCRYGG	1 cut(s)	568
BtsCI	GGATG	1 cut(s)	843
BtsI	GCAGTG	1 cut(s)	1122
BtsIMutI	CAGTG	3 cut(s)	204, 1098, 1122
Cac8I	GCNNGC	4 cut(s)	147, 381, 538, 733
Cfr10I	RCCGGY	1 cut(s)	1084
Cfr13I	GGNCC	5 cut(s)	32, 564, 565, 772, 964
Csp6I	GTAC	5 cut(s)	232, 814, 881, 906, 1054
CspAI	ACCGGT	1 cut(s)	1084
CviAII	CATG	7 cut(s)	146, 276, 302, 338, 560, 569, 886
CviQI	GTAC	5 cut(s)	232, 814, 881, 906, 1054
DdeI	CTNAG	2 cut(s)	138, 960
DpnI	GATC	9 cut(s)	121, 427, 585, 600, 612, 634, 759, 809, 975
DpnII	GATC	9 cut(s)	119, 425, 583, 598, 610, 632, 757, 807, 973
EaeI	YGGCCR	1 cut(s)	783
Eam1104I	CTCTTC	2 cut(s)	397, 1016
EarI	CTCTTC	2 cut(s)	397, 1016
Eco130I	CCWWGG	3 cut(s)	461, 568, 833
Eco24I	GRGCYC	1 cut(s)	568
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	564
EcoT14I	CCWWGG	3 cut(s)	461, 568, 833
EcoT38I	GRGCYC	1 cut(s)	568
ErhI	CCWWGG	3 cut(s)	461, 568, 833
FaeI	CATG	7 cut(s)	149, 279, 305, 341, 563, 572, 889
FaqI	GGGAC	2 cut(s)	18, 470
FatI	CATG	7 cut(s)	145, 275, 301, 337, 559, 568, 885
FauNDI	CATATG	1 cut(s)	822
FbaI	TGATCA	1 cut(s)	583
Fnu4HI	GCNGC	3 cut(s)	143, 516, 918
FokI	GGATG	1 cut(s)	850
FriOI	GRGCYC	1 cut(s)	568
Fsp4HI	GCNGC	3 cut(s)	143, 516, 918
FspBI	CTAG	2 cut(s)	111, 834
GluI	GCNGC	3 cut(s)	143, 516, 918
GsuI	CTGGAG	2 cut(s)	228, 870
HaeIII	GGCC	4 cut(s)	566, 774, 785, 966
HapII	CCGG	3 cut(s)	246, 360, 1085
Hin1II	CATG	7 cut(s)	149, 279, 305, 341, 563, 572, 889
HinfI	GANTC	3 cut(s)	643, 743, 752
HpaII	CCGG	3 cut(s)	246, 360, 1085
Hpy188I	TCNGA	7 cut(s)	217, 330, 509, 757, 762, 1047, 1081
Hpy188III	TCNNGA	1 cut(s)	662
HpyAV	CCTTC	1 cut(s)	919
HpyCH4III	ACNGT	1 cut(s)	875
HpyCH4IV	ACGT	1 cut(s)	1074
HpyCH4V	TGCA	3 cut(s)	518, 971, 1127
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 302, 376, 524, 533
HpyF3I	CTNAG	2 cut(s)	138, 960
HpySE526I	ACGT	1 cut(s)	1074
Hsp92II	CATG	7 cut(s)	149, 279, 305, 341, 563, 572, 889
KpnI	GGTACC	2 cut(s)	235, 909
Ksp22I	TGATCA	1 cut(s)	583
Kzo9I	GATC	9 cut(s)	119, 425, 583, 598, 610, 632, 757, 807, 973
LmnI	GCTCC	5 cut(s)	26, 262, 388, 695, 1045
Lsp1109I	GCAGC	2 cut(s)	502, 904
LweI	GCATC	2 cut(s)	283, 324
MaeI	CTAG	2 cut(s)	111, 834
MaeII	ACGT	1 cut(s)	1074
MalI	GATC	9 cut(s)	121, 427, 585, 600, 612, 634, 759, 809, 975
MbiI	CCGCTC	1 cut(s)	698
MboI	GATC	9 cut(s)	119, 425, 583, 598, 610, 632, 757, 807, 973
MboII	GAAGA	7 cut(s)	179, 310, 313, 384, 853, 950, 1033
MflI	RGATCY	3 cut(s)	757, 807, 973
MhlI	GDGCHC	1 cut(s)	568
MlsI	TGGCCA	1 cut(s)	785
MluCI	AATT	4 cut(s)	62, 555, 711, 787
MluNI	TGGCCA	1 cut(s)	785
MmeI	TCCRAC	1 cut(s)	688
MnlI	CCTC	7 cut(s)	54, 147, 339, 468, 955, 1017, 1053
Mox20I	TGGCCA	1 cut(s)	785
MscI	TGGCCA	1 cut(s)	785
MseI	TTAA	4 cut(s)	470, 684, 900, 1035
Msp20I	TGGCCA	1 cut(s)	785
MspA1I	CMGCKG	1 cut(s)	848
MspI	CCGG	3 cut(s)	246, 360, 1085
MspR9I	CCNGG	2 cut(s)	246, 361
MwoI	GCNNNNNNNGC	5 cut(s)	26, 302, 376, 524, 533
NciI	CCSGG	2 cut(s)	246, 361
NcoI	CCATGG	1 cut(s)	568
NdeI	CATATG	1 cut(s)	822
NdeII	GATC	9 cut(s)	119, 425, 583, 598, 610, 632, 757, 807, 973
NlaIII	CATG	7 cut(s)	149, 279, 305, 341, 563, 572, 889
NlaIV	GGNNCC	6 cut(s)	34, 233, 565, 566, 809, 907
NspI	RCATGY	2 cut(s)	149, 341
PaeI	GCATGC	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	643, 743, 752
PinAI	ACCGGT	1 cut(s)	1084
PkrI	GCNGC	3 cut(s)	144, 517, 919
Ppu21I	YACGTR	1 cut(s)	1075
PspN4I	GGNNCC	6 cut(s)	34, 233, 565, 566, 809, 907
PspOMI	GGGCCC	1 cut(s)	564
PspPI	GGNCC	5 cut(s)	32, 564, 565, 772, 964
PsuI	RGATCY	3 cut(s)	757, 807, 973
PvuII	CAGCTG	1 cut(s)	848
RsaI	GTAC	5 cut(s)	233, 815, 882, 907, 1055
RsaNI	GTAC	5 cut(s)	232, 814, 881, 906, 1054
SaqAI	TTAA	4 cut(s)	470, 684, 900, 1035
SatI	GCNGC	3 cut(s)	143, 516, 918
Sau3AI	GATC	9 cut(s)	119, 425, 583, 598, 610, 632, 757, 807, 973
Sau96I	GGNCC	5 cut(s)	32, 564, 565, 772, 964
ScrFI	CCNGG	2 cut(s)	246, 361
SduI	GDGCHC	1 cut(s)	568
SfaNI	GCATC	2 cut(s)	283, 324
SfcI	CTRYAG	1 cut(s)	528
SinI	GGWCC	1 cut(s)	32
SmlI	CTYRAG	2 cut(s)	21, 225
SmoI	CTYRAG	2 cut(s)	21, 225
SphI	GCATGC	1 cut(s)	149
Sse9I	AATT	4 cut(s)	62, 555, 711, 787
SsiI	CCGC	2 cut(s)	143, 698
SspMI	CTAG	2 cut(s)	111, 834
StyD4I	CCNGG	2 cut(s)	244, 359
StyI	CCWWGG	3 cut(s)	461, 568, 833
TaaI	ACNGT	1 cut(s)	875
TaiI	ACGT	1 cut(s)	1077
TaqI	TCGA	2 cut(s)	613, 652
TasI	AATT	4 cut(s)	62, 555, 711, 787
TatI	WGTACW	2 cut(s)	813, 1053
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	3 cut(s)	643, 743, 752
Tru1I	TTAA	4 cut(s)	470, 684, 900, 1035
Tru9I	TTAA	4 cut(s)	470, 684, 900, 1035
TscAI	CASTG	3 cut(s)	211, 1105, 1129
TseI	GCWGC	2 cut(s)	515, 917
TspDTI	ATGAA	5 cut(s)	290, 495, 548, 854, 901
TspGWI	ACGGA	2 cut(s)	141, 1098
TspRI	CASTG	3 cut(s)	211, 1105, 1129
VpaK11BI	GGWCC	1 cut(s)	32
XapI	RAATTY	2 cut(s)	62, 555
XceI	RCATGY	2 cut(s)	149, 341
XmaJI	CCTAGG	1 cut(s)	833
XspI	CTAG	2 cut(s)	111, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.