Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000952

Physical Location & Seq

Genomic Coordinates Forward (+)

26649770 .. 26653191

Gene Structure 3422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g36321.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGATGGCTACCATGGAAAGTATTCAAGTTGGCTCGAATGCACTTATTCTGGAAGTTCTTAACCGCACTAACTATGAAAATTGGAGACCGCGGGTGAAAACGTATTTGTTAGCTGAAGATCTCTGGGAGGTTCTAGAAGCAATTGGGGAACCTCCAAAACTCGAAGATGACCAAGCTGATTATAAGGCTTGGACCAAAAAGAATGCGAAGGCTTTGTATGCAATTCAAAATTCATGCGGGAGGGAGCTGTTTTATTTTATAAGAGAAATAGAAACAGCCAAAAATGCTTGGGAGGTTTTGGAACAAAAGTGCCAGGTTGTGCAAGAATACGATGAGAACAATGCTGACCACTTGGTGCGCTATAAATCGTTCATCGGATATGTTTACGGTGGTGATTGGAATAAGGCAAAGAAGTGTCTCGGAGATGTTGATGTTCGCAGCATAGCTACAGCGATGGATACAACAGATGACCTTGGAGACATAGCTCTTCATGTAGCAGCCAGGGAAGAGCACATCCATATTGTGAAAGAGTTGGTGCATTTGATGACACAAGAAGATTTGAAATCGAAAAACGCTGAAGGTGACACAGCTCTTCACCTAGCAACATGGAAGGAGCATGTGCACATTGTGAAAGAATTGGGGCCAGTGATGGGGGAAGTGAAAGACAATGATGGTGACACAGCTCTTCACATAGCAGTCCACTTAGGGAAGGTGGATGTTGTGAAAGAGTTAGTGTTGTTGATGAGACAAGAAGACTTGAAAATAGAAAACGATGATGGCTTCACAGCTTTTCACCTAGCAGTGAATAAGGGGAATATGCCTATGGTCAAAGAATTCGTGAAAAATGAAAAAGGTGAGAATAATATTGACAAGGACGGTTTTGAGCGTTATATACCGTTTACTACCTATGGGACAAATGGTGATTGGGACAAGGCAAATGAGTTTCTTAGAGAGCTTGATAATCCATGTGGTGCAGTAACAGCAGTAGATCCAAGAGACGACAACGGATATACTGCTCTTCACGTAGCAGTGTGGAAAGGGCATCTGGATGTGTTAGAAGCTATTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04024 ko04062 ko04064 ko04210 ko04380 ko04620 ko04621 ko04622 ko04623 ko04624 ko04657 ko04658 ko04659 ko04660 ko04662 ko04668 ko04722 ko04920 ko04926 ko04931 ko05120 ko05131 ko05134 ko05140 ko05142 ko05145 ko05160 ko05161 ko05162 ko05164 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05215 ko05220 ko05222 map04024 map04062 map04064 map04210 map04380 map04620 map04621 map04622 map04623 map04624 map04657 map04658 map04659 map04660 map04662 map04668 map04722 map04920 map04926 map04931 map05120 map05131 map05134 map05140 map05142 map05145 map05160 map05161 map05162 map05164 map05166 map05167 map05168 map05169 map05200 map05203 map05215 map05220 map05222

Pfam Domains

Protein Families

Ank_2

Protein Analysis

357

Amino Acids

40.4

Weight (kDa)

4.92

Isoelectric Point (pI)

22.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4219	PF13961	20 - 44	1.8e-08	Domain of unknown function (DUF4219)
Retrotran_gag_2	PF14223	33 - 103	1.2e-10	gag-polypeptide of LTR copia-type
Ank_2	PF12796	151 - 213	6.1e-09	Ankyrin repeats (3 copies)
Ank_2	PF12796	163 - 245	3.8e-14	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36310 FvH4_5g36321 FvH4_5g36321 FvH4_5g36321 FvH4_5g36330 FvH4_5g36641 FvH4_5g36641 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090
rosa_chinensis	RchiOBHm_Chr7g0242961 RchiOBHm_Chr7g0242971 RchiOBHm_Chr7g0243041 RchiOBHm_Chr7g0243171
rosa_laevigata	RLG00000000855 RLG00000000860 RLG00000000865 RLG00000018514
rosa_multiflora	Rmu_sc0004165.1_g000086 Rmu_sc0006141.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032610 Rroxscaffold_2G00111620 Rroxscaffold_3G00222210 Rroxscaffold_3G00222250 Rroxscaffold_4G00316280 Rroxscaffold_4G00323300 Rroxscaffold_4G00325490 Rroxscaffold_6G00396710 Rroxscaffold_6G00411010 Rroxscaffold_7G00195780 Rroxscaffold_7G00199210 Rroxscaffold_7G00199220
rosa_rugosa	Rorug05G0523200 Rorug07G0313100 Rorug07G0317800 Rorug07G0318200 Rorug07G0318400 Rorug07G0318500 Rorug07G0318600
rosa_samantha	Rh1AG201600 Rh1CG186500 Rh7AG473500 Rh7AG473800 Rh7AG474100 Rh7AG474300 Rh7BG443400 Rh7BG443700 Rh7BG444000 Rh7BG444100 Rh7BG444600 Rh7CG490600 Rh7CG490900 Rh7DG458800 Rh7DG459100
rosa_wichuraiana	Rw0G003450 Rw7G038980 Rw7G039040 Rw7G039070 Rw7G039390 Rw7G039450 Rw7G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	183, 260
AccII	CGCG	1 cut(s)	91
AciI	CCGC	4 cut(s)	64, 89, 91, 237
AclWI	GGATC	1 cut(s)	983
AcsI	RAATTY	2 cut(s)	229, 833
AcuI	CTGAAG	2 cut(s)	135, 597
AdeI	CACNNNGTG	2 cut(s)	355, 628
AfiI	CCNNNNNNNGG	1 cut(s)	650
AgsI	TTSAA	4 cut(s)	26, 227, 562, 760
AjnI	CCWGG	2 cut(s)	312, 500
Alw21I	GWGCWC	2 cut(s)	513, 624
Alw26I	GTCTC	5 cut(s)	79, 422, 471, 739, 990
Alw44I	GTGCAC	1 cut(s)	620
AlwI	GGATC	1 cut(s)	983
AoxI	GGCC	1 cut(s)	641
ApaLI	GTGCAC	1 cut(s)	620
ApeKI	GCWGC	2 cut(s)	438, 497
ApoI	RAATTY	2 cut(s)	229, 833
Asp700I	GAANNNNTTC	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	2 cut(s)	192, 641
AsuHPI	GGTGA	8 cut(s)	106, 404, 587, 593, 686, 785, 866, 932
AvaII	GGWCC	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	624
BbsI	GAAGAC	1 cut(s)	759
Bbv12I	GWGCWC	2 cut(s)	513, 624
BbvI	GCAGC	2 cut(s)	450, 509
BccI	CCATC	4 cut(s)	448, 643, 665, 770
BciT130I	CCWGG	2 cut(s)	314, 502
BciVI	GTATCC	1 cut(s)	451
BcoDI	GTCTC	5 cut(s)	79, 422, 471, 739, 990
BfaI	CTAG	4 cut(s)	134, 599, 797, 1069
BfmI	CTRYAG	1 cut(s)	447
BfuI	GTATCC	1 cut(s)	451
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	2 cut(s)	439, 498
BlsI	GCNGC	2 cut(s)	440, 499
Bme1390I	CCNGG	2 cut(s)	314, 502
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	192, 641
BmiI	GGNNCC	2 cut(s)	150, 642
BmrFI	CCNGG	2 cut(s)	314, 502
BmsI	GCATC	1 cut(s)	1051
BpiI	GAAGAC	1 cut(s)	759
BsaAI	YACGTR	1 cut(s)	1024
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	4 cut(s)	12, 89, 472, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse1I	ACTGG	1 cut(s)	644
BseBI	CCWGG	2 cut(s)	314, 502
BseDI	CCNNGG	4 cut(s)	12, 89, 472, 501
BseGI	GGATG	3 cut(s)	513, 721, 1054
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseNI	ACTGG	1 cut(s)	644
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	2 cut(s)	450, 509
BsgI	GTGCAG	1 cut(s)	993
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	643
BsiHKAI	GWGCWC	2 cut(s)	513, 624
BslFI	GGGAC	2 cut(s)	925, 941
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmAI	GTCTC	5 cut(s)	79, 422, 471, 739, 990
BsmBI	CGTCTC	1 cut(s)	990
BsmFI	GGGAC	2 cut(s)	925, 941
BsmI	GAATGC	2 cut(s)	43, 208
BsnI	GGCC	1 cut(s)	643
Bso31I	GGTCTC	1 cut(s)	79
Bsp1286I	GDGCHC	2 cut(s)	513, 624
Bsp143I	GATC	2 cut(s)	118, 988
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	4 cut(s)	64, 89, 91, 237
BspANI	GGCC	1 cut(s)	643
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	150, 642
BspPI	GGATC	1 cut(s)	983
BspQI	GCTCTTC	5 cut(s)	492, 501, 597, 690, 1023
BspTNI	GGTCTC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	644
BssECI	CCNNGG	4 cut(s)	12, 89, 472, 501
BssMI	GATC	2 cut(s)	118, 988
BssT1I	CCWWGG	2 cut(s)	12, 472
Bst2UI	CCWGG	2 cut(s)	314, 502
Bst4CI	ACNGT	3 cut(s)	389, 878, 897
Bst6I	CTCTTC	5 cut(s)	492, 501, 597, 690, 1023
BstBAI	YACGTR	1 cut(s)	1024
BstDEI	CTNAG	2 cut(s)	703, 947
BstDSI	CCRYGG	2 cut(s)	12, 89
BstF5I	GGATG	3 cut(s)	513, 721, 1054
BstFNI	CGCG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	2 cut(s)	121, 991
BstMAI	GTCTC	5 cut(s)	79, 422, 471, 739, 990
BstMBI	GATC	2 cut(s)	118, 988
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 284, 980
BstNI	CCWGG	2 cut(s)	314, 502
BstNSI	RCATGY	1 cut(s)	620
BstSCI	CCNGG	2 cut(s)	312, 500
BstSFI	CTRYAG	1 cut(s)	447
BstSLI	GKGCMC	1 cut(s)	624
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	2 cut(s)	450, 509
BstV2I	GAAGAC	1 cut(s)	759
BstX2I	RGATCY	2 cut(s)	118, 988
BstYI	RGATCY	2 cut(s)	118, 988
BsuI	GTATCC	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	643
BtgI	CCRYGG	2 cut(s)	12, 89
BtgZI	GCGATG	1 cut(s)	467
BtsCI	GGATG	3 cut(s)	513, 721, 1054
BtsI	GCAGTG	2 cut(s)	807, 1035
BtsIMutI	CAGTG	3 cut(s)	651, 807, 1035
CfoI	GCGC	1 cut(s)	360
Cfr13I	GGNCC	2 cut(s)	192, 641
Cfr42I	CCGCGG	1 cut(s)	92
CviAII	CATG	6 cut(s)	13, 234, 491, 606, 617, 966
DdeI	CTNAG	2 cut(s)	703, 947
DpnI	GATC	2 cut(s)	120, 990
DpnII	GATC	2 cut(s)	118, 988
DraIII	CACNNNGTG	2 cut(s)	355, 628
Eam1104I	CTCTTC	5 cut(s)	492, 501, 597, 690, 1023
EarI	CTCTTC	5 cut(s)	492, 501, 597, 690, 1023
Eco130I	CCWWGG	2 cut(s)	12, 472
Eco31I	GGTCTC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	192
Eco57I	CTGAAG	2 cut(s)	135, 597
EcoRI	GAATTC	1 cut(s)	833
EcoRII	CCWGG	2 cut(s)	312, 500
EcoT14I	CCWWGG	2 cut(s)	12, 472
ErhI	CCWWGG	2 cut(s)	12, 472
Esp3I	CGTCTC	1 cut(s)	990
FaeI	CATG	6 cut(s)	16, 237, 494, 609, 620, 969
FaqI	GGGAC	2 cut(s)	925, 941
FatI	CATG	6 cut(s)	12, 233, 490, 605, 616, 965
FauI	CCCGC	2 cut(s)	84, 230
Fnu4HI	GCNGC	2 cut(s)	439, 498
FokI	GGATG	3 cut(s)	500, 728, 1061
Fsp4HI	GCNGC	2 cut(s)	439, 498
FspBI	CTAG	4 cut(s)	134, 599, 797, 1069
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	2 cut(s)	439, 498
HaeIII	GGCC	1 cut(s)	643
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	6 cut(s)	16, 237, 494, 609, 620, 969
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HphI	GGTGA	8 cut(s)	106, 404, 587, 593, 686, 785, 866, 932
Hpy166II	GTNNAC	4 cut(s)	385, 622, 700, 900
Hpy188I	TCNGA	2 cut(s)	377, 422
Hpy188III	TCNNGA	4 cut(s)	50, 134, 838, 1046
Hpy8I	GTNNAC	4 cut(s)	385, 622, 700, 900
HpyAV	CCTTC	4 cut(s)	202, 572, 604, 703
HpyCH4III	ACNGT	3 cut(s)	389, 878, 897
HpyCH4IV	ACGT	2 cut(s)	101, 1023
HpyCH4V	TGCA	6 cut(s)	41, 221, 322, 538, 622, 974
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 284, 980
HpyF3I	CTNAG	2 cut(s)	703, 947
HpySE526I	ACGT	2 cut(s)	101, 1023
Hsp92II	CATG	6 cut(s)	16, 237, 494, 609, 620, 969
HspAI	GCGC	1 cut(s)	358
KspI	CCGCGG	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	118, 988
LguI	GCTCTTC	5 cut(s)	492, 501, 597, 690, 1023
LmnI	GCTCC	2 cut(s)	244, 613
LpnPI	CCDG	8 cut(s)	35, 109, 299, 326, 487, 514, 657, 1031
Lsp1109I	GCAGC	2 cut(s)	450, 509
LweI	GCATC	1 cut(s)	1051
MaeI	CTAG	4 cut(s)	134, 599, 797, 1069
MaeII	ACGT	2 cut(s)	101, 1023
MaeIII	GTNAC	3 cut(s)	581, 674, 976
MalI	GATC	2 cut(s)	120, 990
MboI	GATC	2 cut(s)	118, 988
MboII	GAAGA	9 cut(s)	128, 176, 479, 518, 566, 584, 677, 764, 1010
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	2 cut(s)	118, 988
MhlI	GDGCHC	2 cut(s)	513, 624
MluCI	AATT	6 cut(s)	79, 141, 222, 229, 635, 833
MnlI	CCTC	4 cut(s)	121, 162, 234, 286
MroXI	GAANNNNTTC	1 cut(s)	21
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	1047
MspA1I	CMGCKG	1 cut(s)	91
MspR9I	CCNGG	2 cut(s)	314, 502
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	2 cut(s)	43, 208
MvaI	CCWGG	2 cut(s)	314, 502
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	3 cut(s)	218, 284, 980
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	2 cut(s)	118, 988
NlaIII	CATG	6 cut(s)	16, 237, 494, 609, 620, 969
NlaIV	GGNNCC	2 cut(s)	150, 642
NmuCI	GTSAC	2 cut(s)	581, 674
NspI	RCATGY	1 cut(s)	620
PciSI	GCTCTTC	5 cut(s)	492, 501, 597, 690, 1023
PctI	GAATGC	2 cut(s)	43, 208
PdmI	GAANNNNTTC	1 cut(s)	21
PkrI	GCNGC	2 cut(s)	440, 499
Ppu21I	YACGTR	1 cut(s)	1024
PsiI	TTATAA	2 cut(s)	183, 260
Psp6I	CCWGG	2 cut(s)	312, 500
PspGI	CCWGG	2 cut(s)	312, 500
PspN4I	GGNNCC	2 cut(s)	150, 642
PspPI	GGNCC	2 cut(s)	192, 641
PsuI	RGATCY	2 cut(s)	118, 988
RseI	CAYNNNNRTG	1 cut(s)	1047
SacII	CCGCGG	1 cut(s)	92
SapI	GCTCTTC	5 cut(s)	492, 501, 597, 690, 1023
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	2 cut(s)	439, 498
Sau3AI	GATC	2 cut(s)	118, 988
Sau96I	GGNCC	2 cut(s)	192, 641
ScrFI	CCNGG	2 cut(s)	314, 502
SduI	GDGCHC	2 cut(s)	513, 624
SfaNI	GCATC	1 cut(s)	1051
SfcI	CTRYAG	1 cut(s)	447
Sfr303I	CCGCGG	1 cut(s)	92
SgrBI	CCGCGG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	1047
Sse9I	AATT	6 cut(s)	79, 141, 222, 229, 635, 833
SsiI	CCGC	4 cut(s)	64, 89, 91, 237
SspI	AATATT	1 cut(s)	865
SspMI	CTAG	4 cut(s)	134, 599, 797, 1069
StyD4I	CCNGG	2 cut(s)	312, 500
StyI	CCWWGG	2 cut(s)	12, 472
TaaI	ACNGT	3 cut(s)	389, 878, 897
TaiI	ACGT	2 cut(s)	104, 1026
TaqI	TCGA	3 cut(s)	35, 162, 566
TasI	AATT	6 cut(s)	79, 141, 222, 229, 635, 833
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	3 cut(s)	651, 807, 1035
TseFI	GTSAC	2 cut(s)	581, 674
TseI	GCWGC	2 cut(s)	438, 497
Tsp45I	GTSAC	2 cut(s)	581, 674
TspDTI	ATGAA	5 cut(s)	90, 222, 361, 479, 861
TspGWI	ACGGA	1 cut(s)	1020
TspRI	CASTG	3 cut(s)	651, 807, 1035
VneI	GTGCAC	1 cut(s)	620
VpaK11BI	GGWCC	1 cut(s)	192
XapI	RAATTY	2 cut(s)	229, 833
XbaI	TCTAGA	1 cut(s)	133
XceI	RCATGY	1 cut(s)	620
XmnI	GAANNNNTTC	1 cut(s)	21
XspI	CTAG	4 cut(s)	134, 599, 797, 1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.