Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000952

Physical Location & Seq

Genomic Coordinates Reverse (-)

45285515 .. 45286294

Gene Structure 780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGACCAGGTCTCGACGGTGGACGGCGGCACGGCAGGCGGAAGATTTACCGCTTCTCCATCTCCTCGGCGTCGCTTTGCCCGGACCGGACCCGGCGATTACTTTGGGCACCCACCCAAAGACCGATCAGTTCGGTGTACAAAATGCAAAAGGTTTCACAGTCCTTCATCTAGCAGTATTGAATCGGATTGTAGATGTTGTGAAAGAATTGGTGCCATTCATGGGAGAAGAAGGTTTAGAAATAAAGGAAGGCGATGGAGACACAGCTCTTCATATCTCAATCTTACGAGGGCAGTTACACTCAATTTCCTTGACTATGGACAATGAATTATTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 DUF4219 PGG

Protein Analysis

112

Amino Acids

12.27

Weight (kDa)

5.64

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	43 - 101	3.5e-07	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36310 FvH4_5g36321 FvH4_5g36321 FvH4_5g36321 FvH4_5g36330 FvH4_5g36641 FvH4_5g36641 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090
rosa_chinensis	RchiOBHm_Chr7g0242961 RchiOBHm_Chr7g0242971 RchiOBHm_Chr7g0243041 RchiOBHm_Chr7g0243171
rosa_laevigata	RLG00000000855 RLG00000000860 RLG00000000865 RLG00000018514
rosa_multiflora	Rmu_sc0004165.1_g000086 Rmu_sc0006141.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032610 Rroxscaffold_2G00111620 Rroxscaffold_3G00222210 Rroxscaffold_3G00222250 Rroxscaffold_4G00316280 Rroxscaffold_4G00323300 Rroxscaffold_4G00325490 Rroxscaffold_6G00396710 Rroxscaffold_6G00411010 Rroxscaffold_7G00195780 Rroxscaffold_7G00199210 Rroxscaffold_7G00199220
rosa_rugosa	Rorug05G0523200 Rorug07G0313100 Rorug07G0317800 Rorug07G0318200 Rorug07G0318400 Rorug07G0318500 Rorug07G0318600
rosa_samantha	Rh1AG201600 Rh1CG186500 Rh7AG473500 Rh7AG473800 Rh7AG474100 Rh7AG474300 Rh7BG443400 Rh7BG443700 Rh7BG444000 Rh7BG444100 Rh7BG444600 Rh7CG490600 Rh7CG490900 Rh7DG458800 Rh7DG459100
rosa_wichuraiana	Rw0G003450 Rw7G038980 Rw7G039040 Rw7G039070 Rw7G039390 Rw7G039450 Rw7G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	107, 211
AciI	CCGC	3 cut(s)	26, 38, 50
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw26I	GTCTC	2 cut(s)	15, 252
AspS9I	GGNCC	2 cut(s)	83, 88
AsuC2I	CCSGG	2 cut(s)	81, 92
AvaII	GGWCC	2 cut(s)	83, 88
BaeGI	GKGCMC	1 cut(s)	110
BanI	GGYRCC	2 cut(s)	107, 211
BccI	CCATC	2 cut(s)	66, 248
BceAI	ACGGC	2 cut(s)	39, 47
BciT130I	CCWGG	1 cut(s)	7
BcnI	CCSGG	2 cut(s)	81, 92
BcoDI	GTCTC	2 cut(s)	15, 252
BfaI	CTAG	1 cut(s)	170
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	3 cut(s)	7, 81, 92
Bme18I	GGWCC	2 cut(s)	83, 88
BmgT120I	GGNCC	2 cut(s)	83, 88
BmiI	GGNNCC	3 cut(s)	90, 109, 213
BmrFI	CCNGG	3 cut(s)	7, 81, 92
BpuMI	CCSGG	2 cut(s)	81, 92
BsaHI	GRCGYC	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	85
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	53
BseSI	GKGCMC	1 cut(s)	110
BshNI	GGYRCC	2 cut(s)	107, 211
BsiSI	CCGG	3 cut(s)	81, 86, 92
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	2 cut(s)	15, 252
Bso31I	GGTCTC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp1407I	TGTACA	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	3 cut(s)	26, 38, 50
BspLI	GGNNCC	3 cut(s)	90, 109, 213
BspQI	GCTCTTC	1 cut(s)	273
BspT107I	GGYRCC	2 cut(s)	107, 211
BspTNI	GGTCTC	1 cut(s)	15
BsrGI	TGTACA	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	1 cut(s)	124
BssNI	GRCGYC	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	2 cut(s)	18, 160
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	69
BstAUI	TGTACA	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	36
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	2 cut(s)	15, 252
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	3 cut(s)	5, 79, 90
BstSLI	GKGCMC	1 cut(s)	110
BtgZI	GCGATG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	36
Cfr13I	GGNCC	2 cut(s)	83, 88
CpoI	CGGWCCG	1 cut(s)	83
CseI	GACGC	1 cut(s)	58
CsiI	ACCWGGT	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	137
CspI	CGGWCCG	1 cut(s)	83
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	1 cut(s)	266
CviKI_1	RGCY	1 cut(s)	266
CviQI	GTAC	1 cut(s)	137
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	2 cut(s)	83, 88
EcoRII	CCWGG	1 cut(s)	5
FaeI	CATG	1 cut(s)	223
FaiI	YATR	3 cut(s)	221, 273, 317
FatI	CATG	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	1 cut(s)	27
HapII	CCGG	3 cut(s)	81, 86, 92
HgaI	GACGC	1 cut(s)	58
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	1 cut(s)	223
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	3 cut(s)	81, 86, 92
Hpy166II	GTNNAC	2 cut(s)	21, 137
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	2 cut(s)	21, 137
Hpy99I	CGWCG	2 cut(s)	18, 74
HpyAV	CCTTC	3 cut(s)	173, 224, 242
HpyCH4III	ACNGT	2 cut(s)	18, 160
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	124
LguI	GCTCTTC	1 cut(s)	273
LpnPI	CCDG	5 cut(s)	19, 20, 94, 99, 105
MabI	ACCWGGT	1 cut(s)	5
MaeI	CTAG	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	294
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	3 cut(s)	53, 239, 260
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	3 cut(s)	206, 303, 326
MnlI	CCTC	2 cut(s)	74, 281
MspI	CCGG	3 cut(s)	81, 86, 92
MspR9I	CCNGG	3 cut(s)	7, 81, 92
MvaI	CCWGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	35
NciI	CCSGG	2 cut(s)	81, 92
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	3 cut(s)	90, 109, 213
NmeAIII	GCCGAG	1 cut(s)	45
PciSI	GCTCTTC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	181
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	3 cut(s)	90, 109, 213
PspPI	GGNCC	2 cut(s)	83, 88
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
Rsr2I	CGGWCCG	1 cut(s)	83
RsrII	CGGWCCG	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	273
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	2 cut(s)	83, 88
ScrFI	CCNGG	3 cut(s)	7, 81, 92
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	4 cut(s)	11, 154, 235, 268
SexAI	ACCWGGT	1 cut(s)	5
SinI	GGWCC	2 cut(s)	83, 88
Sse9I	AATT	3 cut(s)	206, 303, 326
SsiI	CCGC	3 cut(s)	26, 38, 50
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	3 cut(s)	5, 79, 90
TaaI	ACNGT	2 cut(s)	18, 160
TaqI	TCGA	1 cut(s)	13
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	3 cut(s)	206, 303, 326
TatI	WGTACW	1 cut(s)	136
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	181
TspDTI	ATGAA	4 cut(s)	155, 208, 260, 339
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	2 cut(s)	83, 88
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.