Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000952

Physical Location & Seq

Genomic Coordinates Forward (+)

18177029 .. 18179347

Gene Structure 2319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00396710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTTCGCTCCACACTCAAAATCGTCAAGCAAGGAGGGCATGGGGATGATCGGCAAGAGGAGGAGATCACGAAAATGGGGAGGATCGACCCGTGCATCGCCGGAAAAAAGTCGTTTTCCGCCGGGTCGGATCGAAAGGATGCGAAGTGGCTTCGATCCGTACTTGGAGGCAGCGGCGGGGCACGGCGACATCGGAGGGAGGATCGGCGTGAGGCGGCGATGCCGGGGAGGCCGGTCCGGGGCGGGAGGCGGCGGGAGATGCCCTTTTCCGGCCGGGTCGGGTCGGAGAAGACCCGACGGGTCCGAGGTGTACAAAATGCAAAAGGTTTCACGGTCCTTCATCTAGCAGTTTTGAATCGGATTGTAGATGTTGTGAAAGAATTGGTGCCATTCATGGGAGAAGAAGGTTTAGAAATAAAGGAAGCTGATGGAGACACAGCTCTTCATATCTCGATCTTACGAGGGCAGTTACACTCAATTTCCTTGACTATGGACAATGAATTATTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 DUF4219

Protein Analysis

170

Amino Acids

18.94

Weight (kDa)

10.34

Isoelectric Point (pI)

61.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	103 - 158	2.1e-06	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36310 FvH4_5g36321 FvH4_5g36321 FvH4_5g36321 FvH4_5g36330 FvH4_5g36641 FvH4_5g36641 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090
rosa_chinensis	RchiOBHm_Chr7g0242961 RchiOBHm_Chr7g0242971 RchiOBHm_Chr7g0243041 RchiOBHm_Chr7g0243171
rosa_laevigata	RLG00000000855 RLG00000000860 RLG00000000865 RLG00000018514
rosa_multiflora	Rmu_sc0004165.1_g000086 Rmu_sc0006141.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032610 Rroxscaffold_2G00111620 Rroxscaffold_3G00222210 Rroxscaffold_3G00222250 Rroxscaffold_4G00316280 Rroxscaffold_4G00323300 Rroxscaffold_4G00325490 Rroxscaffold_6G00396710 Rroxscaffold_6G00411010 Rroxscaffold_7G00195780 Rroxscaffold_7G00199210 Rroxscaffold_7G00199220
rosa_rugosa	Rorug05G0523200 Rorug07G0313100 Rorug07G0317800 Rorug07G0318200 Rorug07G0318400 Rorug07G0318500 Rorug07G0318600
rosa_samantha	Rh1AG201600 Rh1CG186500 Rh7AG473500 Rh7AG473800 Rh7AG474100 Rh7AG474300 Rh7BG443400 Rh7BG443700 Rh7BG444000 Rh7BG444100 Rh7BG444600 Rh7CG490600 Rh7CG490900 Rh7DG458800 Rh7DG459100
rosa_wichuraiana	Rw0G003450 Rw7G038980 Rw7G039040 Rw7G039070 Rw7G039390 Rw7G039450 Rw7G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	385
AciI	CCGC	7 cut(s)	120, 174, 177, 215, 243, 250, 253
AclWI	GGATC	4 cut(s)	92, 138, 150, 210
AcoI	YGGCCR	1 cut(s)	271
AfaI	GTAC	2 cut(s)	162, 312
AfiI	CCNNNNNNNGG	3 cut(s)	239, 269, 395
AgsI	TTSAA	1 cut(s)	355
AluBI	AGCT	2 cut(s)	425, 440
AluI	AGCT	2 cut(s)	425, 440
Alw26I	GTCTC	1 cut(s)	426
AlwI	GGATC	4 cut(s)	92, 138, 150, 210
AoxI	GGCC	2 cut(s)	230, 271
ApeKI	GCWGC	1 cut(s)	171
AspS9I	GGNCC	3 cut(s)	235, 301, 334
AsuC2I	CCSGG	4 cut(s)	124, 225, 239, 275
AvaII	GGWCC	3 cut(s)	235, 301, 334
BaeGI	GKGCMC	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	1 cut(s)	422
BceAI	ACGGC	1 cut(s)	200
BcnI	CCSGG	4 cut(s)	124, 225, 239, 275
BcoDI	GTCTC	1 cut(s)	426
BfaI	CTAG	1 cut(s)	344
BglI	GCCNNNNNGGC	1 cut(s)	229
BisI	GCNGC	4 cut(s)	172, 175, 216, 251
BlsI	GCNGC	4 cut(s)	173, 176, 217, 252
Bme1390I	CCNGG	4 cut(s)	124, 225, 239, 275
Bme18I	GGWCC	3 cut(s)	235, 301, 334
BmgT120I	GGNCC	3 cut(s)	235, 301, 334
BmiI	GGNNCC	2 cut(s)	302, 387
BmrFI	CCNGG	4 cut(s)	124, 225, 239, 275
BmsI	GCATC	4 cut(s)	105, 130, 210, 249
BpiI	GAAGAC	1 cut(s)	296
BpuMI	CCSGG	4 cut(s)	124, 225, 239, 275
BsaJI	CCNNGG	3 cut(s)	224, 238, 304
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 269, 395
Bse118I	RCCGGY	1 cut(s)	232
BseDI	CCNNGG	3 cut(s)	224, 238, 304
BseGI	GGATG	2 cut(s)	52, 145
BseLI	CCNNNNNNNGG	3 cut(s)	239, 269, 395
BseRI	GAGGAG	2 cut(s)	74, 77
BseSI	GKGCMC	1 cut(s)	184
BseX3I	CGGCCG	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	183
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	2 cut(s)	232, 273
BshNI	GGYRCC	1 cut(s)	385
BsiEI	CGRYCG	1 cut(s)	274
BsiSI	CCGG	7 cut(s)	102, 123, 224, 233, 238, 270, 274
BslI	CCNNNNNNNGG	3 cut(s)	239, 269, 395
BsmAI	GTCTC	1 cut(s)	426
BsnI	GGCC	2 cut(s)	232, 273
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp1407I	TGTACA	1 cut(s)	310
Bsp143I	GATC	7 cut(s)	49, 66, 84, 130, 155, 202, 453
BspACI	CCGC	7 cut(s)	120, 174, 177, 215, 243, 250, 253
BspANI	GGCC	2 cut(s)	232, 273
BspLI	GGNNCC	2 cut(s)	302, 387
BspPI	GGATC	4 cut(s)	92, 138, 150, 210
BspQI	GCTCTTC	1 cut(s)	447
BspT107I	GGYRCC	1 cut(s)	385
BsrFI	RCCGGY	1 cut(s)	232
BsrGI	TGTACA	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	3 cut(s)	224, 238, 304
BssMI	GATC	7 cut(s)	49, 66, 84, 130, 155, 202, 453
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	447
BstAUI	TGTACA	1 cut(s)	310
BstF5I	GGATG	2 cut(s)	52, 145
BstKTI	GATC	7 cut(s)	52, 69, 87, 133, 158, 205, 456
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	7 cut(s)	49, 66, 84, 130, 155, 202, 453
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 229, 259
BstSCI	CCNGG	4 cut(s)	122, 223, 237, 273
BstSLI	GKGCMC	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	183
BstV2I	GAAGAC	1 cut(s)	296
BstZI	CGGCCG	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	232, 273
BtgZI	GCGATG	2 cut(s)	82, 233
BtsCI	GGATG	2 cut(s)	52, 145
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	3 cut(s)	235, 301, 334
CpoI	CGGWCCG	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	161, 311
CspI	CGGWCCG	1 cut(s)	235
CviAII	CATG	2 cut(s)	41, 394
CviJI	RGCY	5 cut(s)	151, 232, 273, 425, 440
CviKI_1	RGCY	5 cut(s)	151, 232, 273, 425, 440
CviQI	GTAC	2 cut(s)	161, 311
DpnI	GATC	7 cut(s)	51, 68, 86, 132, 157, 204, 455
DpnII	GATC	7 cut(s)	49, 66, 84, 130, 155, 202, 453
EaeI	YGGCCR	1 cut(s)	271
EagI	CGGCCG	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
EciI	GGCGGA	1 cut(s)	109
EclXI	CGGCCG	1 cut(s)	271
Eco47I	GGWCC	3 cut(s)	235, 301, 334
Eco52I	CGGCCG	1 cut(s)	271
FaeI	CATG	2 cut(s)	44, 397
FaiI	YATR	4 cut(s)	42, 395, 447, 491
FatI	CATG	2 cut(s)	40, 393
FauI	CCCGC	3 cut(s)	170, 236, 246
Fnu4HI	GCNGC	4 cut(s)	172, 175, 216, 251
FokI	GGATG	2 cut(s)	59, 152
Fsp4HI	GCNGC	4 cut(s)	172, 175, 216, 251
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	4 cut(s)	172, 175, 216, 251
HaeIII	GGCC	2 cut(s)	232, 273
HapII	CCGG	7 cut(s)	102, 123, 224, 233, 238, 270, 274
Hin1II	CATG	2 cut(s)	44, 397
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	7 cut(s)	102, 123, 224, 233, 238, 270, 274
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	5 cut(s)	130, 195, 286, 305, 360
Hpy188III	TCNNGA	2 cut(s)	70, 451
Hpy8I	GTNNAC	1 cut(s)	311
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	2 cut(s)	347, 398
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4V	TGCA	2 cut(s)	96, 320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 229, 259
Hsp92II	CATG	2 cut(s)	44, 397
Kzo9I	GATC	7 cut(s)	49, 66, 84, 130, 155, 202, 453
LguI	GCTCTTC	1 cut(s)	447
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	7 cut(s)	115, 136, 237, 246, 251, 283, 287
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	4 cut(s)	105, 130, 210, 249
MaeI	CTAG	1 cut(s)	344
MaeIII	GTNAC	1 cut(s)	468
MalI	GATC	7 cut(s)	51, 68, 86, 132, 157, 204, 455
MboI	GATC	7 cut(s)	49, 66, 84, 130, 155, 202, 453
MboII	GAAGA	3 cut(s)	301, 413, 434
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	3 cut(s)	380, 477, 500
MmeI	TCCRAC	2 cut(s)	108, 264
MslI	CAYNNNNRTG	2 cut(s)	45, 74
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	7 cut(s)	102, 123, 224, 233, 238, 270, 274
MspR9I	CCNGG	4 cut(s)	124, 225, 239, 275
MwoI	GCNNNNNNNGC	3 cut(s)	37, 229, 259
NciI	CCSGG	4 cut(s)	124, 225, 239, 275
NdeII	GATC	7 cut(s)	49, 66, 84, 130, 155, 202, 453
NlaIII	CATG	2 cut(s)	44, 397
NlaIV	GGNNCC	2 cut(s)	302, 387
PciSI	GCTCTTC	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	4 cut(s)	173, 176, 217, 252
PspN4I	GGNNCC	2 cut(s)	302, 387
PspPI	GGNCC	3 cut(s)	235, 301, 334
RsaI	GTAC	2 cut(s)	162, 312
RsaNI	GTAC	2 cut(s)	161, 311
RseI	CAYNNNNRTG	2 cut(s)	45, 74
Rsr2I	CGGWCCG	1 cut(s)	235
RsrII	CGGWCCG	1 cut(s)	235
SapI	GCTCTTC	1 cut(s)	447
SatI	GCNGC	4 cut(s)	172, 175, 216, 251
Sau3AI	GATC	7 cut(s)	49, 66, 84, 130, 155, 202, 453
Sau96I	GGNCC	3 cut(s)	235, 301, 334
ScrFI	CCNGG	4 cut(s)	124, 225, 239, 275
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	5 cut(s)	310, 328, 409, 427, 442
SfaNI	GCATC	4 cut(s)	105, 130, 210, 249
SinI	GGWCC	3 cut(s)	235, 301, 334
SmiMI	CAYNNNNRTG	2 cut(s)	45, 74
Sse9I	AATT	3 cut(s)	380, 477, 500
SsiI	CCGC	7 cut(s)	120, 174, 177, 215, 243, 250, 253
SspMI	CTAG	1 cut(s)	344
StyD4I	CCNGG	4 cut(s)	122, 223, 237, 273
TaaI	ACNGT	1 cut(s)	334
TaqI	TCGA	4 cut(s)	87, 133, 154, 452
TasI	AATT	3 cut(s)	380, 477, 500
TatI	WGTACW	1 cut(s)	310
TauI	GCSGC	3 cut(s)	177, 218, 253
TfiI	GAWTC	1 cut(s)	355
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	4 cut(s)	329, 382, 434, 513
TspGWI	ACGGA	1 cut(s)	148
VpaK11BI	GGWCC	3 cut(s)	235, 301, 334
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.