Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000952

Physical Location & Seq

Genomic Coordinates Reverse (-)

59983237 .. 60005988

Gene Structure 22752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2250 bp

ATGGCAAGTACCCTAGTTGGCTCTAATGCACTTGTTCTGGAAGTTCTTGACCGTAGTAACTATAAACATTGGAGATCACGATTGAAAACTTATTTGTTGGTTGAAGATCTCTGGGAGGCTGTCGAAGCAATCGTGGAACCTCCAAAAATTGAAGATGATCAAGCCAATTATAAGGCCTGGACCAAAAAGAACATAAAGGCTTTGTATGCAATCCAAAATTCGTGCGGGAGAGAGCTGTTCTCTATTATAAGTGAAATTGAGACGGCCAAAAGTGCCTGGGAGGCTTTGGAACAAGAGTTCAAAGTTGTACAAGGATATGATGAGAACAATACCAACCACTTGATGTGCTATAAATCGTTCATTGAATCTGTAAGCAGTGGTGATTGGGGTAAGGCAAGGAAGTGTCTTGGAGAAGTTGATATCCGCAGTGTACTAGTAGTAAGAGCAGTAGGCACATATGGAAAAATAGCTCTTCATGTAGCATCCCAGGAAGGGCACGTGCATGTAGTGAAAGATTTGCTGCCTTTCATGACACAAGAAGATTTGAAAACAAAAACAGATTTTGGTCACACAGCTCTGCATCTAGCAGCAGGGATGGGGCATTTGCCGGTGCTGTTGATGGGAGAAGTAAAAGACAATAACGGTGACACGGCTCTTCATATAGCAGTCCAGGAAGGGCACGCCGATGTTGTGAAAGAGTTGGTGTTGTTGATGAGACAAGAAGACTTGAAAATAGAAAACGATGCTGGTTACACAGCTCTTCACCTAGCAGTCAATAAGGGGAACGTGCCTATGGTCAAAGAGTTCGTTACAAAAGAAAAAGGTGAGAATAATATTGGCGAGGACGACTTTGAGCATTATATACCATTTACCAGCCATGTGACAAATGGTGATTGGGATAAGGCAAATGAGTGTCTTAGAGAACTAGATAATCCATGCAGTGCAATAACAACAGTAGATCCAAGAGACGACTACCAAGACACTGCTCTTCACGTAGCAGCCCGGGAAGGGCATTTGGATGTTATCAAAGGATTGGTGTTGTTGTTGAAAATGAGACAAGAAGATTTGGAATTGAAAACTGTCGAAGATTTCACAACTTTTGGTTATGGTATAACTTTAGGGGTCAATGAAGAATTCCTCATGGAAAGGGCCAAATACATAGTTGAACAGTACGAGAAAACACTTGGCAGCTGTTTGGAGATACAAAACGCTGAAGGTTCCACGGCTCTTCACATAGCAGTGCAGCATGGGTATATGGATATTGCGAAGGAGTTGGTGCAATCGATGAGACAAGAAGGTTTGGAAATAAAAAACAAAGAGGGTTCCAATGCTCTTCATGGAGCAGTATTGGAGGGAAATGTAGATATTGTGAAAGAGTTGGTGCCATTAATGAGAAAAGAAGGTTTAGAAATAAAAGACGCTGATGGAGACACAGCTCTTAACATTGCAATATTACAAGGGCATGTGGATATTGCGAAAGAGTTGGTGCAATCGATGAGACAAGAAGGTTTGGAAATAAAAAACAAAAACGGTTCCAATGCTCTTCACCTAGCGGTCAACAATGAGCATAAGCATTTTGCTAAAGAGTTGATGGCATTGATGAGACCAGAAGCTTTGGAAGAAAAAGACGGTCAAGGTCATACAGCTTTAAATAGGGCTGTCCAACGTTTCAAGGATGGAGACGTTCACGAAATTGCTAAATTCATGGCTGAAAAGAATGATAAATTATTTGGCATACCTTCCGCTCCCGATGATGACATTCCGGTTGTCAGAGCTCTTCGTTTTAGTAAATGGAAATCGGTTCGCTGTATGTATTTTGTCACTCCACTTGAAGCTCTCGAGGGACGCAACGGCAGTTCACTTATTTGCTTATGTCTCAATGCTAGCAACACCATTGATTTGGCATGGGACTTGCTTCAACGTTGTCCAAATTTGGCCTTCACTATCGATAACTTATGTTATACTACTCCTATGTTGAGATTGGCTCATATGCATTTTGCATTCTTAAGTGGAACACGACTCACACGCTGGCAGAAGTTTCTTTATGATTGTATATCCATACAAGAAGTTGCTCATGTTAACATTCATGATATCTCTATAGATGTTCTGGAATCAAAAGATGACGATAACAAGAAAAAGAATTTCATTCCCTCAGTTATGAGTTTCTTTAGAAGATTTGCTAAAGGAATCCAGGTATTTTGCGGTATGCTACATCCACACTTCTTACTCTTATTTTTAATTATGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 DUF4219

Protein Analysis

749

Amino Acids

84.32

Weight (kDa)

5.51

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4219	PF13961	16 - 42	9.9e-08	Domain of unknown function (DUF4219)
Retrotran_gag_2	PF14223	29 - 103	1.1e-10	gag-polypeptide of LTR copia-type
Ank_2	PF12796	153 - 205	5.2e-06	Ankyrin repeats (3 copies)
Ank_2	PF12796	158 - 235	3.8e-14	Ankyrin repeats (3 copies)
Ank_2	PF12796	210 - 273	6.1e-11	Ankyrin repeats (3 copies)
Ank_5	PF13857	212 - 257	5.1e-07	Ankyrin repeats (many copies)
Ank_2	PF12796	237 - 346	1.3e-07	Ankyrin repeats (3 copies)
Ank_2	PF12796	400 - 461	2.3e-10	Ankyrin repeats (3 copies)
Ank_2	PF12796	435 - 498	1e-09	Ankyrin repeats (3 copies)
Ank_2	PF12796	496 - 573	3.1e-06	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36310 FvH4_5g36321 FvH4_5g36321 FvH4_5g36321 FvH4_5g36330 FvH4_5g36641 FvH4_5g36641 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090
rosa_chinensis	RchiOBHm_Chr7g0242961 RchiOBHm_Chr7g0242971 RchiOBHm_Chr7g0243041 RchiOBHm_Chr7g0243171
rosa_laevigata	RLG00000000855 RLG00000000860 RLG00000000865 RLG00000018514
rosa_multiflora	Rmu_sc0004165.1_g000086 Rmu_sc0006141.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032610 Rroxscaffold_2G00111620 Rroxscaffold_3G00222210 Rroxscaffold_3G00222250 Rroxscaffold_4G00316280 Rroxscaffold_4G00323300 Rroxscaffold_4G00325490 Rroxscaffold_6G00396710 Rroxscaffold_6G00411010 Rroxscaffold_7G00195780 Rroxscaffold_7G00199210 Rroxscaffold_7G00199220
rosa_rugosa	Rorug05G0523200 Rorug07G0313100 Rorug07G0317800 Rorug07G0318200 Rorug07G0318400 Rorug07G0318500 Rorug07G0318600
rosa_samantha	Rh1AG201600 Rh1CG186500 Rh7AG473500 Rh7AG473800 Rh7AG474100 Rh7AG474300 Rh7BG443400 Rh7BG443700 Rh7BG444000 Rh7BG444100 Rh7BG444600 Rh7CG490600 Rh7CG490900 Rh7DG458800 Rh7DG459100
rosa_wichuraiana	Rw0G003450 Rw7G038980 Rw7G039040 Rw7G039070 Rw7G039390 Rw7G039450 Rw7G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	171, 248
AccB1I	GGYRCC	1 cut(s)	1381
AccBSI	CCGCTC	1 cut(s)	1745
AciI	CCGC	5 cut(s)	225, 424, 1553, 1743, 2202
AclI	AACGTT	2 cut(s)	1666, 1921
AclWI	GGATC	1 cut(s)	953
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	5 cut(s)	217, 1133, 1700, 1930, 2140
AcuI	CTGAAG	1 cut(s)	1233
AcvI	CACGTG	1 cut(s)	499
AfaI	GTAC	4 cut(s)	10, 309, 432, 1172
AfiI	CCNNNNNNNGG	2 cut(s)	492, 1008
AflII	CTTAAG	1 cut(s)	2005
AhlI	ACTAGT	1 cut(s)	433
AjnI	CCWGG	5 cut(s)	176, 275, 486, 669, 2190
AloI	GAACNNNNNNTCC	2 cut(s)	281, 313
Alw21I	GWGCWC	1 cut(s)	1777
AlwI	GGATC	1 cut(s)	953
Ama87I	CYCGRG	2 cut(s)	1002, 1838
AoxI	GGCC	4 cut(s)	174, 264, 1149, 1935
ApeKI	GCWGC	5 cut(s)	520, 587, 998, 1188, 1243
ApoI	RAATTY	5 cut(s)	217, 1133, 1700, 1930, 2140
AseI	ATTAAT	1 cut(s)	1388
AspS9I	GGNCC	2 cut(s)	180, 1149
AsuC2I	CCSGG	2 cut(s)	1003, 1004
AsuHPI	GGTGA	6 cut(s)	392, 656, 755, 836, 902, 1538
AsuNHI	GCTAGC	1 cut(s)	1883
AvaI	CYCGRG	2 cut(s)	1002, 1838
AvaII	GGWCC	1 cut(s)	180
BaeGI	GKGCMC	2 cut(s)	498, 681
BanI	GGYRCC	1 cut(s)	1381
BanII	GRGCYC	1 cut(s)	1777
BbrPI	CACGTG	1 cut(s)	499
BbsI	GAAGAC	1 cut(s)	729
Bbv12I	GWGCWC	1 cut(s)	1777
BbvI	GCAGC	5 cut(s)	507, 599, 1010, 1200, 1255
BccI	CCATC	5 cut(s)	589, 613, 1418, 1585, 1670
BceAI	ACGGC	4 cut(s)	279, 666, 1239, 1867
BciT130I	CCWGG	5 cut(s)	178, 277, 488, 671, 2192
BclI	TGATCA	1 cut(s)	157
BcnI	CCSGG	2 cut(s)	1003, 1004
BcuI	ACTAGT	1 cut(s)	433
BfaI	CTAG	7 cut(s)	14, 434, 584, 767, 926, 1550, 1884
BfmI	CTRYAG	1 cut(s)	2097
BfrI	CTTAAG	1 cut(s)	2005
BglI	GCCNNNNNGGC	1 cut(s)	281
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	5 cut(s)	521, 588, 999, 1189, 1244
BlsI	GCNGC	5 cut(s)	522, 589, 1000, 1190, 1245
Bme1390I	CCNGG	7 cut(s)	178, 277, 488, 671, 1003, 1004, 2192
Bme18I	GGWCC	1 cut(s)	180
BmeT110I	CYCGRG	2 cut(s)	1002, 1838
BmgT120I	GGNCC	2 cut(s)	180, 1149
BmiI	GGNNCC	5 cut(s)	138, 1219, 1324, 1383, 1534
BmrFI	CCNGG	7 cut(s)	178, 277, 488, 671, 1003, 1004, 2192
BmsI	GCATC	3 cut(s)	491, 589, 733
BmtI	GCTAGC	1 cut(s)	1887
BpiI	GAAGAC	1 cut(s)	729
BplI	GAGNNNNNCTC	4 cut(s)	224, 256, 1969, 2001
BpuMI	CCSGG	2 cut(s)	1003, 1004
Bsa29I	ATCGAT	3 cut(s)	1283, 1493, 1947
BsaAI	YACGTR	2 cut(s)	499, 994
BsaI	GGTCTC	1 cut(s)	1597
BsaJI	CCNNGG	4 cut(s)	276, 486, 1002, 1221
BsaWI	WCCGGW	1 cut(s)	1762
Bsc4I	CCNNNNNNNGG	2 cut(s)	492, 1008
Bse118I	RCCGGY	1 cut(s)	607
Bse3DI	GCAATG	1 cut(s)	1443
BseBI	CCWGG	5 cut(s)	178, 277, 488, 671, 2192
BseCI	ATCGAT	3 cut(s)	1283, 1493, 1947
BseDI	CCNNGG	4 cut(s)	276, 486, 1002, 1221
BseGI	GGATG	5 cut(s)	482, 600, 1024, 1681, 2212
BseLI	CCNNNNNNNGG	2 cut(s)	492, 1008
BseMI	GCAATG	1 cut(s)	1443
BseMII	CTCAG	1 cut(s)	2166
BseSI	GKGCMC	2 cut(s)	498, 681
BseXI	GCAGC	5 cut(s)	507, 599, 1010, 1200, 1255
BsgI	GTGCAG	1 cut(s)	1262
BshFI	GGCC	4 cut(s)	176, 266, 1151, 1937
BshNI	GGYRCC	1 cut(s)	1381
BshVI	ATCGAT	3 cut(s)	1283, 1493, 1947
BsiHKAI	GWGCWC	1 cut(s)	1777
BsiHKCI	CYCGRG	2 cut(s)	1002, 1838
BsiSI	CCGG	3 cut(s)	608, 1003, 1763
BslFI	GGGAC	2 cut(s)	1857, 1922
BslI	CCNNNNNNNGG	2 cut(s)	492, 1008
BsmBI	CGTCTC	3 cut(s)	254, 960, 1674
BsmFI	GGGAC	2 cut(s)	1857, 1922
BsmI	GAATGC	1 cut(s)	2000
BsnI	GGCC	4 cut(s)	176, 266, 1151, 1937
Bso31I	GGTCTC	1 cut(s)	1597
BsoBI	CYCGRG	2 cut(s)	1002, 1838
Bsp1286I	GDGCHC	3 cut(s)	498, 681, 1777
Bsp1407I	TGTACA	1 cut(s)	307
Bsp143I	GATC	4 cut(s)	74, 106, 157, 958
BspACI	CCGC	5 cut(s)	225, 424, 1553, 1743, 2202
BspANI	GGCC	4 cut(s)	176, 266, 1151, 1937
BspCNI	CTCAG	1 cut(s)	2165
BspDI	ATCGAT	3 cut(s)	1283, 1493, 1947
BspHI	TCATGA	2 cut(s)	528, 2086
BspLI	GGNNCC	5 cut(s)	138, 1219, 1324, 1383, 1534
BspOI	GCTAGC	1 cut(s)	1887
BspPI	GGATC	1 cut(s)	953
BspQI	GCTCTTC	8 cut(s)	477, 660, 765, 993, 1233, 1338, 1548, 1782
BspT107I	GGYRCC	1 cut(s)	1381
BspTI	CTTAAG	1 cut(s)	2005
BspTNI	GGTCTC	1 cut(s)	1597
BsrBI	CCGCTC	1 cut(s)	1745
BsrDI	GCAATG	1 cut(s)	1443
BsrFI	RCCGGY	1 cut(s)	607
BsrGI	TGTACA	1 cut(s)	307
BssAI	RCCGGY	1 cut(s)	607
BssECI	CCNNGG	4 cut(s)	276, 486, 1002, 1221
BssMI	GATC	4 cut(s)	74, 106, 157, 958
Bst2UI	CCWGG	5 cut(s)	178, 277, 488, 671, 2192
Bst4CI	ACNGT	7 cut(s)	53, 644, 955, 1081, 1170, 1532, 1631
Bst6I	CTCTTC	8 cut(s)	477, 660, 765, 993, 1233, 1338, 1548, 1782
BstAFI	CTTAAG	1 cut(s)	2005
BstAUI	TGTACA	1 cut(s)	307
BstBAI	YACGTR	2 cut(s)	499, 994
BstC8I	GCNNGC	3 cut(s)	681, 1885, 2030
BstDEI	CTNAG	2 cut(s)	917, 2152
BstDSI	CCRYGG	1 cut(s)	1221
BstF5I	GGATG	5 cut(s)	482, 600, 1024, 1681, 2212
BstKTI	GATC	4 cut(s)	77, 109, 160, 961
BstMBI	GATC	4 cut(s)	74, 106, 157, 958
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 206, 272, 281
BstNI	CCWGG	5 cut(s)	178, 277, 488, 671, 2192
BstNSI	RCATGY	2 cut(s)	506, 1466
BstSCI	CCNGG	7 cut(s)	176, 275, 486, 669, 1001, 1002, 2190
BstSFI	CTRYAG	1 cut(s)	2097
BstSLI	GKGCMC	2 cut(s)	498, 681
BstV1I	GCAGC	5 cut(s)	507, 599, 1010, 1200, 1255
BstV2I	GAAGAC	1 cut(s)	729
BstX2I	RGATCY	2 cut(s)	106, 958
BstXI	CCANNNNNNTGG	1 cut(s)	1900
BstYI	RGATCY	2 cut(s)	106, 958
Bsu15I	ATCGAT	3 cut(s)	1283, 1493, 1947
BsuRI	GGCC	4 cut(s)	176, 266, 1151, 1937
BsuTUI	ATCGAT	3 cut(s)	1283, 1493, 1947
BtgI	CCRYGG	1 cut(s)	1221
BtsCI	GGATG	5 cut(s)	482, 600, 1024, 1681, 2212
BtsI	GCAGTG	5 cut(s)	382, 433, 946, 981, 1245
BtsIMutI	CAGTG	5 cut(s)	382, 433, 946, 981, 1245
Cac8I	GCNNGC	3 cut(s)	681, 1885, 2030
CciI	TCATGA	2 cut(s)	528, 2086
Cfr10I	RCCGGY	1 cut(s)	607
Cfr13I	GGNCC	2 cut(s)	180, 1149
Cfr9I	CCCGGG	1 cut(s)	1002
ClaI	ATCGAT	3 cut(s)	1283, 1493, 1947
CseI	GACGC	2 cut(s)	1427, 1854
Csp6I	GTAC	4 cut(s)	9, 308, 431, 1171
CviQI	GTAC	4 cut(s)	9, 308, 431, 1171
DdeI	CTNAG	2 cut(s)	917, 2152
DpnI	GATC	4 cut(s)	76, 108, 159, 960
DpnII	GATC	4 cut(s)	74, 106, 157, 958
DraI	TTTAAA	1 cut(s)	1650
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	8 cut(s)	477, 660, 765, 993, 1233, 1338, 1548, 1782
EarI	CTCTTC	8 cut(s)	477, 660, 765, 993, 1233, 1338, 1548, 1782
Ecl136II	GAGCTC	1 cut(s)	1775
Eco147I	AGGCCT	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	1777
Eco31I	GGTCTC	1 cut(s)	1597
Eco32I	GATATC	2 cut(s)	421, 2092
Eco47I	GGWCC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	1775
Eco57I	CTGAAG	1 cut(s)	1233
Eco72I	CACGTG	1 cut(s)	499
Eco88I	CYCGRG	2 cut(s)	1002, 1838
EcoICRI	GAGCTC	1 cut(s)	1775
EcoRI	GAATTC	1 cut(s)	1133
EcoRII	CCWGG	5 cut(s)	176, 275, 486, 669, 2190
EcoRV	GATATC	2 cut(s)	421, 2092
EcoT22I	ATGCAT	1 cut(s)	1995
EcoT38I	GRGCYC	1 cut(s)	1777
Esp3I	CGTCTC	3 cut(s)	254, 960, 1674
FaqI	GGGAC	2 cut(s)	1857, 1922
FauI	CCCGC	1 cut(s)	218
FauNDI	CATATG	2 cut(s)	457, 1989
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	5 cut(s)	521, 588, 999, 1189, 1244
FokI	GGATG	5 cut(s)	469, 607, 1031, 1688, 2199
FriOI	GRGCYC	1 cut(s)	1777
Fsp4HI	GCNGC	5 cut(s)	521, 588, 999, 1189, 1244
FspBI	CTAG	7 cut(s)	14, 434, 584, 767, 926, 1550, 1884
GluI	GCNGC	5 cut(s)	521, 588, 999, 1189, 1244
HaeIII	GGCC	4 cut(s)	176, 266, 1151, 1937
HapII	CCGG	3 cut(s)	608, 1003, 1763
HgaI	GACGC	2 cut(s)	1427, 1854
HincII	GTYRAC	2 cut(s)	1558, 2080
HindII	GTYRAC	2 cut(s)	1558, 2080
HindIII	AAGCTT	1 cut(s)	1611
HinfI	GANTC	4 cut(s)	365, 2019, 2111, 2187
HpaI	GTTAAC	1 cut(s)	2080
HpaII	CCGG	3 cut(s)	608, 1003, 1763
HphI	GGTGA	6 cut(s)	392, 656, 755, 836, 902, 1538
Hpy166II	GTNNAC	5 cut(s)	431, 1558, 1687, 1859, 2080
Hpy188I	TCNGA	1 cut(s)	1772
Hpy188III	TCNNGA	9 cut(s)	38, 47, 78, 529, 1688, 1748, 1838, 2087, 2108
Hpy8I	GTNNAC	5 cut(s)	431, 1558, 1687, 1859, 2080
HpyCH4III	ACNGT	7 cut(s)	53, 644, 955, 1081, 1170, 1532, 1631
HpyCH4IV	ACGT	6 cut(s)	498, 786, 993, 1666, 1683, 1921
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 206, 272, 281
HpyF3I	CTNAG	2 cut(s)	917, 2152
HpySE526I	ACGT	6 cut(s)	498, 786, 993, 1666, 1683, 1921
Ksp22I	TGATCA	1 cut(s)	157
KspAI	GTTAAC	1 cut(s)	2080
Kzo9I	GATC	4 cut(s)	74, 106, 157, 958
LguI	GCTCTTC	8 cut(s)	477, 660, 765, 993, 1233, 1338, 1548, 1782
LmnI	GCTCC	2 cut(s)	1340, 1750
Lsp1109I	GCAGC	5 cut(s)	507, 599, 1010, 1200, 1255
LweI	GCATC	3 cut(s)	491, 589, 733
MaeI	CTAG	7 cut(s)	14, 434, 584, 767, 926, 1550, 1884
MaeII	ACGT	6 cut(s)	498, 786, 993, 1666, 1683, 1921
MaeIII	GTNAC	7 cut(s)	56, 566, 644, 749, 808, 880, 1819
MalI	GATC	4 cut(s)	76, 108, 159, 960
MbiI	CCGCTC	1 cut(s)	1745
MboI	GATC	4 cut(s)	74, 106, 157, 958
MflI	RGATCY	2 cut(s)	106, 958
MhlI	GDGCHC	3 cut(s)	498, 681, 1777
MlyI	GAGTC	1 cut(s)	2013
MmeI	TCCRAC	1 cut(s)	1687
MnlI	CCTC	9 cut(s)	109, 150, 274, 835, 1148, 1312, 1345, 1834, 2161
Mph1103I	ATGCAT	1 cut(s)	1995
MseI	TTAA	7 cut(s)	1388, 1440, 1649, 2006, 2079, 2237, 2248
MslI	CAYNNNNRTG	4 cut(s)	501, 684, 1017, 1238
MspA1I	CMGCKG	1 cut(s)	1191
MspCI	CTTAAG	1 cut(s)	2005
MspI	CCGG	3 cut(s)	608, 1003, 1763
MspR9I	CCNGG	7 cut(s)	178, 277, 488, 671, 1003, 1004, 2192
Mva1269I	GAATGC	1 cut(s)	2000
MvaI	CCWGG	5 cut(s)	178, 277, 488, 671, 2192
MwoI	GCNNNNNNNGC	4 cut(s)	125, 206, 272, 281
NciI	CCSGG	2 cut(s)	1003, 1004
NdeI	CATATG	2 cut(s)	457, 1989
NdeII	GATC	4 cut(s)	74, 106, 157, 958
NheI	GCTAGC	1 cut(s)	1883
NlaIV	GGNNCC	5 cut(s)	138, 1219, 1324, 1383, 1534
NmuCI	GTSAC	4 cut(s)	566, 644, 880, 1819
NsiI	ATGCAT	1 cut(s)	1995
NspI	RCATGY	2 cut(s)	506, 1466
PaeR7I	CTCGAG	1 cut(s)	1838
PagI	TCATGA	2 cut(s)	528, 2086
PceI	AGGCCT	1 cut(s)	176
PciSI	GCTCTTC	8 cut(s)	477, 660, 765, 993, 1233, 1338, 1548, 1782
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	1 cut(s)	2000
PfeI	GAWTC	3 cut(s)	365, 2111, 2187
PfoI	TCCNGGA	1 cut(s)	669
PkrI	GCNGC	5 cut(s)	522, 589, 1000, 1190, 1245
PleI	GAGTC	1 cut(s)	2013
PmaCI	CACGTG	1 cut(s)	499
PmlI	CACGTG	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	2013
Ppu21I	YACGTR	2 cut(s)	499, 994
PshBI	ATTAAT	1 cut(s)	1388
PsiI	TTATAA	2 cut(s)	171, 248
Psp124BI	GAGCTC	1 cut(s)	1777
Psp1406I	AACGTT	2 cut(s)	1666, 1921
Psp6I	CCWGG	5 cut(s)	176, 275, 486, 669, 2190
PspCI	CACGTG	1 cut(s)	499
PspGI	CCWGG	5 cut(s)	176, 275, 486, 669, 2190
PspN4I	GGNNCC	5 cut(s)	138, 1219, 1324, 1383, 1534
PspPI	GGNCC	2 cut(s)	180, 1149
PsuI	RGATCY	2 cut(s)	106, 958
PvuII	CAGCTG	1 cut(s)	1191
RsaI	GTAC	4 cut(s)	10, 309, 432, 1172
RsaNI	GTAC	4 cut(s)	9, 308, 431, 1171
RseI	CAYNNNNRTG	4 cut(s)	501, 684, 1017, 1238
SacI	GAGCTC	1 cut(s)	1777
SapI	GCTCTTC	8 cut(s)	477, 660, 765, 993, 1233, 1338, 1548, 1782
SaqAI	TTAA	7 cut(s)	1388, 1440, 1649, 2006, 2079, 2237, 2248
SatI	GCNGC	5 cut(s)	521, 588, 999, 1189, 1244
Sau3AI	GATC	4 cut(s)	74, 106, 157, 958
Sau96I	GGNCC	2 cut(s)	180, 1149
SchI	GAGTC	1 cut(s)	2013
ScrFI	CCNGG	7 cut(s)	178, 277, 488, 671, 1003, 1004, 2192
SduI	GDGCHC	3 cut(s)	498, 681, 1777
SfaNI	GCATC	3 cut(s)	491, 589, 733
SfcI	CTRYAG	1 cut(s)	2097
Sfr274I	CTCGAG	1 cut(s)	1838
SinI	GGWCC	1 cut(s)	180
SlaI	CTCGAG	1 cut(s)	1838
SmaI	CCCGGG	1 cut(s)	1004
SmiMI	CAYNNNNRTG	4 cut(s)	501, 684, 1017, 1238
SmlI	CTYRAG	2 cut(s)	1838, 2005
SmoI	CTYRAG	2 cut(s)	1838, 2005
SpeI	ACTAGT	1 cut(s)	433
SseBI	AGGCCT	1 cut(s)	176
SsiI	CCGC	5 cut(s)	225, 424, 1553, 1743, 2202
SspI	AATATT	2 cut(s)	835, 1452
SspMI	CTAG	7 cut(s)	14, 434, 584, 767, 926, 1550, 1884
SstI	GAGCTC	1 cut(s)	1777
StuI	AGGCCT	1 cut(s)	176
StyD4I	CCNGG	7 cut(s)	176, 275, 486, 669, 1001, 1002, 2190
TaaI	ACNGT	7 cut(s)	53, 644, 955, 1081, 1170, 1532, 1631
TaiI	ACGT	6 cut(s)	501, 789, 996, 1669, 1686, 1924
TaqI	TCGA	6 cut(s)	123, 1083, 1283, 1493, 1839, 1947
TatI	WGTACW	2 cut(s)	307, 430
TfiI	GAWTC	3 cut(s)	365, 2111, 2187
Tru1I	TTAA	7 cut(s)	1388, 1440, 1649, 2006, 2079, 2237, 2248
Tru9I	TTAA	7 cut(s)	1388, 1440, 1649, 2006, 2079, 2237, 2248
TscAI	CASTG	5 cut(s)	382, 433, 946, 988, 1245
TseFI	GTSAC	4 cut(s)	566, 644, 880, 1819
TseI	GCWGC	5 cut(s)	520, 587, 998, 1188, 1243
Tsp45I	GTSAC	4 cut(s)	566, 644, 880, 1819
TspDTI	ATGAA	9 cut(s)	349, 464, 517, 647, 1143, 1325, 1693, 2075, 2134
TspMI	CCCGGG	1 cut(s)	1002
TspRI	CASTG	5 cut(s)	382, 433, 946, 988, 1245
Vha464I	CTTAAG	1 cut(s)	2005
VpaK11BI	GGWCC	1 cut(s)	180
VspI	ATTAAT	1 cut(s)	1388
XapI	RAATTY	5 cut(s)	217, 1133, 1700, 1930, 2140
XceI	RCATGY	2 cut(s)	506, 1466
XcmI	CCANNNNNNNNNTGG	1 cut(s)	884
XhoI	CTCGAG	1 cut(s)	1838
XmaI	CCCGGG	1 cut(s)	1002
XspI	CTAG	7 cut(s)	14, 434, 584, 767, 926, 1550, 1884
Zsp2I	ATGCAT	1 cut(s)	1995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.