RchiOBHm_Chr7g0242971

spectrin binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000952
Physical Location & Seq
Forward (+)
69262414 .. 69263896
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21775

Sequence Viewer

Length: 468 bp
ATGCTAATTGTTGTGCAATTCTTTTGCTTTCACTCTACTTTAGATTTGGCATGGGACTTGCTTCAACGTTGCCCAAATTTGGCATTCACTATCACTAAACCGCCTGATAAAACTAGTCCTATGTTGAAATTGGCTCGTATGCATTTTGCATTCTTAAGTGGAACACGACTCACATGCTGGCAAAGGTGGCTTTATGATTTGGAATTAGTAATTATCTGGAGTTGGACCGGTGAAAGTGGCTTATGGATGAGAACTTGGCTCCTATTTGTTTGCTGGGAAGTAGCATTATGTTTCGTACCACAATTACGTGAGGCGGATGGAGGGCTAGTTGATGATTTTTCCCTAGAAGACACGGAGTTAATCTTTATTTATAGGTTCTCTATAAAAATTGAGCTCAATTTGCCTTGTCATGAGTTGCAATGCTTAGATATGAATTTTGGTTGTTGCCCTGCCTATTTCTATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 DUF4219

Protein Analysis

155

Amino Acids

18.31

Weight (kDa)

4.9

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 101, 314
AclI AACGTT 1 cut(s) 67
AcsI RAATTY 2 cut(s) 76, 433
AfaI GTAC 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 79
AflII CTTAAG 1 cut(s) 154
AgeI ACCGGT 1 cut(s) 227
AgsI TTSAA 2 cut(s) 65, 127
AhlI ACTAGT 1 cut(s) 113
AluBI AGCT 1 cut(s) 394
AluI AGCT 1 cut(s) 394
Alw21I GWGCWC 1 cut(s) 396
ApoI RAATTY 2 cut(s) 76, 433
AsiGI ACCGGT 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 242
AvaII GGWCC 1 cut(s) 225
BanII GRGCYC 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 396
BccI CCATC 1 cut(s) 311
BcgI CGANNNNNNTGC 2 cut(s) 156, 190
BcuI ACTAGT 1 cut(s) 113
BfaI CTAG 3 cut(s) 114, 326, 344
BfrI CTTAAG 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 354
BpmI CTGGAG 1 cut(s) 238
BsaAI YACGTR 1 cut(s) 308
BsaWI WCCGGW 1 cut(s) 227
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 227
Bse3DI GCAATG 1 cut(s) 425
BseGI GGATG 2 cut(s) 252, 322
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 1 cut(s) 425
BseYI CCCAGC 1 cut(s) 273
BshTI ACCGGT 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 396
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 68
BsmI GAATGC 2 cut(s) 83, 149
Bsp1286I GDGCHC 1 cut(s) 396
BspACI CCGC 2 cut(s) 101, 314
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 260
BspTI CTTAAG 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 425
BsrFI RCCGGY 1 cut(s) 227
BssAI RCCGGY 1 cut(s) 227
BstAFI CTTAAG 1 cut(s) 154
BstBAI YACGTR 1 cut(s) 308
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 424
BstF5I GGATG 2 cut(s) 252, 322
BstMWI GCNNNNNNNGC 2 cut(s) 187, 400
BstNSI RCATGY 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 354
BtsCI GGATG 2 cut(s) 252, 322
Cac8I GCNNGC 1 cut(s) 179
CciI TCATGA 1 cut(s) 409
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 225
Csp6I GTAC 1 cut(s) 296
CspAI ACCGGT 1 cut(s) 227
CviAII CATG 3 cut(s) 51, 174, 410
CviJI RGCY 6 cut(s) 134, 190, 240, 259, 325, 394
CviKI_1 RGCY 6 cut(s) 134, 190, 240, 259, 325, 394
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 1 cut(s) 424
EciI GGCGGA 1 cut(s) 329
Ecl136II GAGCTC 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 394
EcoICRI GAGCTC 1 cut(s) 394
EcoT22I ATGCAT 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 396
FaeI CATG 3 cut(s) 54, 177, 413
FaqI GGGAC 1 cut(s) 68
FatI CATG 3 cut(s) 50, 173, 409
FokI GGATG 2 cut(s) 259, 329
FriOI GRGCYC 1 cut(s) 396
FspBI CTAG 3 cut(s) 114, 326, 344
GsaI CCCAGC 1 cut(s) 277
GsuI CTGGAG 1 cut(s) 238
HapII CCGG 1 cut(s) 228
Hin1II CATG 3 cut(s) 54, 177, 413
HinfI GANTC 1 cut(s) 168
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 242
Hpy188III TCNNGA 2 cut(s) 217, 410
HpyCH4IV ACGT 2 cut(s) 67, 307
HpyCH4V TGCA 4 cut(s) 16, 142, 149, 418
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 400
HpyF3I CTNAG 1 cut(s) 424
HpySE526I ACGT 2 cut(s) 67, 307
Hsp92II CATG 3 cut(s) 54, 177, 413
LmnI GCTCC 1 cut(s) 264
LpnPI CCDG 6 cut(s) 117, 163, 202, 241, 259, 462
MaeI CTAG 3 cut(s) 114, 326, 344
MaeII ACGT 2 cut(s) 67, 307
MboII GAAGA 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 396
MlyI GAGTC 1 cut(s) 162
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 2 cut(s) 304, 314
Mph1103I ATGCAT 1 cut(s) 144
MseI TTAA 2 cut(s) 155, 359
MspCI CTTAAG 1 cut(s) 154
MspI CCGG 1 cut(s) 228
Mva1269I GAATGC 2 cut(s) 83, 149
MwoI GCNNNNNNNGC 2 cut(s) 187, 400
NlaIII CATG 3 cut(s) 54, 177, 413
NlaIV GGNNCC 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 144
NspI RCATGY 1 cut(s) 177
PagI TCATGA 1 cut(s) 409
PctI GAATGC 2 cut(s) 83, 149
PinAI ACCGGT 1 cut(s) 227
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
Ppu21I YACGTR 1 cut(s) 308
Psp124BI GAGCTC 1 cut(s) 396
Psp1406I AACGTT 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 260
PspPI GGNCC 1 cut(s) 225
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
SacI GAGCTC 1 cut(s) 396
SaqAI TTAA 2 cut(s) 155, 359
Sau96I GGNCC 1 cut(s) 225
SchI GAGTC 1 cut(s) 162
SduI GDGCHC 1 cut(s) 396
SetI ASST 5 cut(s) 70, 188, 310, 377, 396
SinI GGWCC 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
SpeI ACTAGT 1 cut(s) 113
SsiI CCGC 2 cut(s) 101, 314
SspMI CTAG 3 cut(s) 114, 326, 344
SstI GAGCTC 1 cut(s) 396
TaiI ACGT 2 cut(s) 70, 310
Tru1I TTAA 2 cut(s) 155, 359
Tru9I TTAA 2 cut(s) 155, 359
TspDTI ATGAA 1 cut(s) 446
TspGWI ACGGA 1 cut(s) 368
Vha464I CTTAAG 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 225
XapI RAATTY 2 cut(s) 76, 433
XceI RCATGY 1 cut(s) 177
XspI CTAG 3 cut(s) 114, 326, 344
Zsp2I ATGCAT 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.