Rh7BG444100

spectrin binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000952
Physical Location & Seq
Forward (+)
51634486 .. 51663428
28943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG444100.1

Sequence Viewer

Length: 1032 bp
ATGGTCAGAGAGTTCGTGAGAAAAGAAAAAGGTGAGAATAATATTGGCGAGGACGACTTTGAGCGTTATATACCGTTTACCACCTATGTGGGAATCGGTGATTGGGATAAGGCAAATGAGTGTCTTAGAGAACTAGATAATCCTTGTGGTGCAGTAACAGCAGTAGATCCAAGAGATGACTTCCGAGACACTGCTCTTCATGTAGCAGCCCGGGATGGGTATTTGAATGTTACCAAAGGATTGGTGTTGTTGCTTAAAATGAGACAAGAATATTTGGAATTGAAAACCGCTGAAGATTTCACTACTTTTGGTTCTGGTATAACTTTAGGGGTCAGTGAAGAATTCCTCATGGAAAGGGCCAAATACATGGTTGAACAGTACGAGAAAACACTTGGCAGCATTTTGGAGATACAAAACGCCAAAGGTTCCACAGCTCTTCGCCTAGCAGTACTGCTAGGGTATGGGGATATTGTGAAAGAGTTGGTGCCATTAATGAGAAAAGAAGGTTTAGAAATAAAAGACGCTGGTGGAGACACAGCTCTTCACATTGCAATAAAAAAAGGGCATGTGAATATTGCGAAGGAGTTGCTGCAATCGATGAGACCAGAGGCTTTGGAAGAAAAGGACAATCAAGGTTTTACAGCTTTGAGTTTGGCTATTCAATGTTTCAAGGATGGAGAGGTTTGCGAAATGGCTAAATACATGGCTGAGAAAAATGATAAAGTATTCGGCATACCCTCGGCTCGCGGTGATGATATTCCAGTTGTCAGAGCTTTTCGTGGGGGTAAGAGGAAATTGGCTCGCTATATCTATTCTGTCACTCCACTTGAAGCTCTCAAGGGACCCAATGGCAGTTTAGTTATTTGCTTATGTCTCGATGCTAGCAACATGATTGATTTGGCATGGGACTTGCTTCAACGTTGCCCAAATTTGGCTTTCACTATCACTAAACCGCCTGAATCTACTCCTATGATGAAATTGGCTCGCATGCATTTTGCATTCTTAAGTGGAACACGACTCACACGTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 DUF4219

Protein Analysis

343

Amino Acids

38.39

Weight (kDa)

5.79

Isoelectric Point (pI)

28.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 147 - 239 3.1e-12 Ankyrin repeats (3 copies)
Ank_5 PF13857 179 - 219 1.3e-06 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 484
AccII CGCG 1 cut(s) 747
AciI CCGC 3 cut(s) 288, 747, 953
AclI AACGTT 1 cut(s) 919
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 2 cut(s) 341, 928
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 2 cut(s) 380, 450
AfiI CCNNNNNNNGG 2 cut(s) 216, 931
AflII CTTAAG 1 cut(s) 1003
AflIII ACRYGT 1 cut(s) 1022
AgsI TTSAA 7 cut(s) 226, 283, 374, 662, 670, 830, 917
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 5 cut(s) 434, 539, 644, 773, 833
AluI AGCT 5 cut(s) 434, 539, 644, 773, 833
Alw26I GTCTC 5 cut(s) 180, 256, 525, 595, 878
AlwI GGATC 1 cut(s) 161
Ama87I CYCGRG 1 cut(s) 210
AoxI GGCC 1 cut(s) 357
ApeKI GCWGC 3 cut(s) 206, 396, 589
ApoI RAATTY 2 cut(s) 341, 928
AseI ATTAAT 1 cut(s) 491
AspS9I GGNCC 2 cut(s) 357, 842
AsuC2I CCSGG 2 cut(s) 211, 212
AsuHPI GGTGA 3 cut(s) 44, 110, 761
AsuNHI GCTAGC 1 cut(s) 881
AvaI CYCGRG 1 cut(s) 210
AvaII GGWCC 1 cut(s) 842
BanI GGYRCC 1 cut(s) 484
BbvI GCAGC 3 cut(s) 218, 408, 576
BccI CCATC 2 cut(s) 209, 668
BcgI CGANNNNNNTGC 2 cut(s) 568, 602
BcnI CCSGG 2 cut(s) 211, 212
BcoDI GTCTC 5 cut(s) 180, 256, 525, 595, 878
BfaI CTAG 4 cut(s) 134, 443, 455, 882
BfrI CTTAAG 1 cut(s) 1003
BisI GCNGC 3 cut(s) 207, 397, 590
BlsI GCNGC 3 cut(s) 208, 398, 591
BmcAI AGTACT 1 cut(s) 450
Bme1390I CCNGG 2 cut(s) 211, 212
Bme18I GGWCC 1 cut(s) 842
BmeT110I CYCGRG 1 cut(s) 210
BmgT120I GGNCC 2 cut(s) 357, 842
BmiI GGNNCC 4 cut(s) 427, 486, 843, 844
BmrFI CCNGG 2 cut(s) 211, 212
BmsI GCATC 1 cut(s) 868
BmtI GCTAGC 1 cut(s) 885
BpuEI CTTGAG 1 cut(s) 821
BpuMI CCSGG 2 cut(s) 211, 212
Bsa29I ATCGAT 1 cut(s) 596
BsaI GGTCTC 1 cut(s) 595
BsaJI CCNNGG 2 cut(s) 210, 738
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 931
Bse1I ACTGG 1 cut(s) 761
Bse3DI GCAATG 1 cut(s) 546
BseCI ATCGAT 1 cut(s) 596
BseDI CCNNGG 2 cut(s) 210, 738
BseGI GGATG 2 cut(s) 220, 679
BseLI CCNNNNNNNGG 2 cut(s) 216, 931
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 1 cut(s) 699
BseNI ACTGG 1 cut(s) 761
BseXI GCAGC 3 cut(s) 218, 408, 576
BsgI GTGCAG 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 747
BshFI GGCC 1 cut(s) 359
BshNI GGYRCC 1 cut(s) 484
BshVI ATCGAT 1 cut(s) 596
BsiHKCI CYCGRG 1 cut(s) 210
BsiSI CCGG 1 cut(s) 211
BslFI GGGAC 2 cut(s) 855, 920
BslI CCNNNNNNNGG 2 cut(s) 216, 931
BsmAI GTCTC 5 cut(s) 180, 256, 525, 595, 878
BsmFI GGGAC 2 cut(s) 855, 920
BsmI GAATGC 1 cut(s) 998
BsnI GGCC 1 cut(s) 359
Bso31I GGTCTC 1 cut(s) 595
BsoBI CYCGRG 1 cut(s) 210
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 3 cut(s) 288, 747, 953
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 1 cut(s) 700
BspDI ATCGAT 1 cut(s) 596
BspFNI CGCG 1 cut(s) 747
BspLI GGNNCC 4 cut(s) 427, 486, 843, 844
BspOI GCTAGC 1 cut(s) 885
BspPI GGATC 1 cut(s) 161
BspQI GCTCTTC 3 cut(s) 201, 441, 546
BspT107I GGYRCC 1 cut(s) 484
BspTI CTTAAG 1 cut(s) 1003
BspTNI GGTCTC 1 cut(s) 595
BsrDI GCAATG 1 cut(s) 546
BsrI ACTGG 1 cut(s) 761
BssECI CCNNGG 2 cut(s) 210, 738
BssMI GATC 1 cut(s) 166
Bst4CI ACNGT 2 cut(s) 75, 378
Bst6I CTCTTC 3 cut(s) 201, 441, 546
BstAFI CTTAAG 1 cut(s) 1003
BstC8I GCNNGC 5 cut(s) 745, 802, 883, 985, 989
BstDEI CTNAG 2 cut(s) 125, 708
BstF5I GGATG 2 cut(s) 220, 679
BstFNI CGCG 1 cut(s) 747
BstKTI GATC 1 cut(s) 169
BstMAI GTCTC 5 cut(s) 180, 256, 525, 595, 878
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 2 cut(s) 569, 991
BstSCI CCNGG 2 cut(s) 209, 210
BstUI CGCG 1 cut(s) 747
BstV1I GCAGC 3 cut(s) 218, 408, 576
BstX2I RGATCY 1 cut(s) 166
BstXI CCANNNNNNTGG 3 cut(s) 88, 241, 367
BstYI RGATCY 1 cut(s) 166
Bsu15I ATCGAT 1 cut(s) 596
BsuRI GGCC 1 cut(s) 359
BsuTUI ATCGAT 1 cut(s) 596
BtsCI GGATG 2 cut(s) 220, 679
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 189, 340
Cac8I GCNNGC 5 cut(s) 745, 802, 883, 985, 989
Cfr13I GGNCC 2 cut(s) 357, 842
Cfr9I CCCGGG 1 cut(s) 210
ClaI ATCGAT 1 cut(s) 596
CseI GACGC 1 cut(s) 530
Csp6I GTAC 2 cut(s) 379, 449
CviAII CATG 8 cut(s) 200, 349, 367, 566, 703, 889, 903, 988
CviQI GTAC 2 cut(s) 379, 449
DdeI CTNAG 2 cut(s) 125, 708
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eam1104I CTCTTC 3 cut(s) 201, 441, 546
EarI CTCTTC 3 cut(s) 201, 441, 546
Eco31I GGTCTC 1 cut(s) 595
Eco47I GGWCC 1 cut(s) 842
Eco57I CTGAAG 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 842
EcoRI GAATTC 1 cut(s) 341
EcoT22I ATGCAT 1 cut(s) 993
FaeI CATG 8 cut(s) 203, 352, 370, 569, 706, 892, 906, 991
FaqI GGGAC 2 cut(s) 855, 920
FatI CATG 8 cut(s) 199, 348, 366, 565, 702, 888, 902, 987
Fnu4HI GCNGC 3 cut(s) 207, 397, 590
FokI GGATG 2 cut(s) 227, 686
Fsp4HI GCNGC 3 cut(s) 207, 397, 590
FspBI CTAG 4 cut(s) 134, 443, 455, 882
GluI GCNGC 3 cut(s) 207, 397, 590
HaeIII GGCC 1 cut(s) 359
HapII CCGG 1 cut(s) 211
HgaI GACGC 1 cut(s) 530
Hin1II CATG 8 cut(s) 203, 352, 370, 569, 706, 892, 906, 991
HinfI GANTC 3 cut(s) 93, 959, 1017
HpaII CCGG 1 cut(s) 211
HphI GGTGA 3 cut(s) 44, 110, 761
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 3 cut(s) 8, 185, 770
Hpy188III TCNNGA 2 cut(s) 16, 875
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 2 cut(s) 497, 574
HpyCH4III ACNGT 2 cut(s) 75, 378
HpyCH4IV ACGT 2 cut(s) 919, 1024
HpyCH4V TGCA 5 cut(s) 152, 551, 592, 991, 998
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 2 cut(s) 125, 708
HpySE526I ACGT 2 cut(s) 919, 1024
Hsp92II CATG 8 cut(s) 203, 352, 370, 569, 706, 892, 906, 991
KflI GGGWCCC 1 cut(s) 842
Kzo9I GATC 1 cut(s) 166
LguI GCTCTTC 3 cut(s) 201, 441, 546
LpnPI CCDG 6 cut(s) 224, 300, 510, 618, 774, 969
Lsp1109I GCAGC 3 cut(s) 218, 408, 576
LweI GCATC 1 cut(s) 868
MaeI CTAG 4 cut(s) 134, 443, 455, 882
MaeII ACGT 2 cut(s) 919, 1024
MaeIII GTNAC 3 cut(s) 154, 229, 817
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 6 cut(s) 188, 305, 350, 428, 533, 629
MflI RGATCY 1 cut(s) 166
MluCI AATT 5 cut(s) 278, 341, 794, 928, 977
MlyI GAGTC 1 cut(s) 1011
MnlI CCTC 6 cut(s) 43, 356, 601, 673, 748, 783
Mph1103I ATGCAT 1 cut(s) 993
MseI TTAA 3 cut(s) 255, 491, 1004
MslI CAYNNNNRTG 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 290
MspCI CTTAAG 1 cut(s) 1003
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 2 cut(s) 211, 212
Mva1269I GAATGC 1 cut(s) 998
MvnI CGCG 1 cut(s) 747
MwoI GCNNNNNNNGC 1 cut(s) 158
NciI CCSGG 2 cut(s) 211, 212
NdeII GATC 1 cut(s) 166
NheI GCTAGC 1 cut(s) 881
NlaIII CATG 8 cut(s) 203, 352, 370, 569, 706, 892, 906, 991
NlaIV GGNNCC 4 cut(s) 427, 486, 843, 844
NmeAIII GCCGAG 1 cut(s) 719
NmuCI GTSAC 1 cut(s) 817
NsiI ATGCAT 1 cut(s) 993
NspI RCATGY 2 cut(s) 569, 991
OliI CACNNNNGTG 1 cut(s) 86
PaeI GCATGC 1 cut(s) 991
PciSI GCTCTTC 3 cut(s) 201, 441, 546
PcsI WCGNNNNNNNCGW 1 cut(s) 1021
PctI GAATGC 1 cut(s) 998
PfeI GAWTC 2 cut(s) 93, 959
PkrI GCNGC 3 cut(s) 208, 398, 591
PleI GAGTC 1 cut(s) 1011
PpsI GAGTC 1 cut(s) 1011
PpuMI RGGWCCY 1 cut(s) 842
PshBI ATTAAT 1 cut(s) 491
Psp1406I AACGTT 1 cut(s) 919
Psp5II RGGWCCY 1 cut(s) 842
PspN4I GGNNCC 4 cut(s) 427, 486, 843, 844
PspPI GGNCC 2 cut(s) 357, 842
PspPPI RGGWCCY 1 cut(s) 842
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 2 cut(s) 380, 450
RsaNI GTAC 2 cut(s) 379, 449
RseI CAYNNNNRTG 1 cut(s) 86
SapI GCTCTTC 3 cut(s) 201, 441, 546
SaqAI TTAA 3 cut(s) 255, 491, 1004
SatI GCNGC 3 cut(s) 207, 397, 590
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 2 cut(s) 357, 842
ScaI AGTACT 1 cut(s) 450
SchI GAGTC 1 cut(s) 1011
ScrFI CCNGG 2 cut(s) 211, 212
SfaNI GCATC 1 cut(s) 868
SinI GGWCC 1 cut(s) 842
SmaI CCCGGG 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 2 cut(s) 836, 1003
SmoI CTYRAG 2 cut(s) 836, 1003
SphI GCATGC 1 cut(s) 991
Sse9I AATT 5 cut(s) 278, 341, 794, 928, 977
SsiI CCGC 3 cut(s) 288, 747, 953
SspI AATATT 3 cut(s) 43, 272, 574
SspMI CTAG 4 cut(s) 134, 443, 455, 882
StyD4I CCNGG 2 cut(s) 209, 210
TaaI ACNGT 2 cut(s) 75, 378
TaiI ACGT 2 cut(s) 922, 1027
TaqI TCGA 2 cut(s) 596, 876
TasI AATT 5 cut(s) 278, 341, 794, 928, 977
TatI WGTACW 1 cut(s) 448
TfiI GAWTC 2 cut(s) 93, 959
Tru1I TTAA 3 cut(s) 255, 491, 1004
Tru9I TTAA 3 cut(s) 255, 491, 1004
TscAI CASTG 2 cut(s) 196, 340
TseFI GTSAC 1 cut(s) 817
TseI GCWGC 3 cut(s) 206, 396, 589
Tsp45I GTSAC 1 cut(s) 817
TspDTI ATGAA 2 cut(s) 188, 989
TspMI CCCGGG 1 cut(s) 210
TspRI CASTG 2 cut(s) 196, 340
Vha464I CTTAAG 1 cut(s) 1003
VpaK11BI GGWCC 1 cut(s) 842
VspI ATTAAT 1 cut(s) 491
XapI RAATTY 2 cut(s) 341, 928
XceI RCATGY 2 cut(s) 569, 991
XmaI CCCGGG 1 cut(s) 210
XspI CTAG 4 cut(s) 134, 443, 455, 882
ZrmI AGTACT 1 cut(s) 450
Zsp2I ATGCAT 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.