Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000952

Physical Location & Seq

Genomic Coordinates Reverse (-)

45278708 .. 45279462

Gene Structure 755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGACCAGGTCTCGACGGTGGACGGCGGCACAGCAGGCGGAAGCTTTACCGCTTCTCCATCTCCTCGCCGTCGCTTTGCCCGGACCGGACCCGGCAGATTACTTTGGGCACCCACCCAAAGACCGATCAGTTCGGTTTGTTCTCACACCGGTCGGCTTTGTTCTCACACCCGCCGCCTTCGTTCTCACCTCGGTTCGGCTTCTTCTTCAGCAAAAGACAGATCGATCCGGTGTACAAAATGCAAAAGGTTTCACAGTCCTTCATCTAGCAGTATTGAATCGGATTGTAGATGTTGTGAAAGAATTGGTGCCATTCATGGGAGAAGAAGGTTTAGAAATAAAGGAAGCCGATGGAGACACAGCTCTTCATATCTCAATCTTACAGGGCAGTTACACTCAATTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 DUF4219

Protein Analysis

135

Amino Acids

14.8

Weight (kDa)

6.91

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	64 - 131	3.2e-08	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36310 FvH4_5g36321 FvH4_5g36321 FvH4_5g36321 FvH4_5g36330 FvH4_5g36641 FvH4_5g36641 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090
rosa_chinensis	RchiOBHm_Chr7g0242961 RchiOBHm_Chr7g0242971 RchiOBHm_Chr7g0243041 RchiOBHm_Chr7g0243171
rosa_laevigata	RLG00000000855 RLG00000000860 RLG00000000865 RLG00000018514
rosa_multiflora	Rmu_sc0004165.1_g000086 Rmu_sc0006141.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032610 Rroxscaffold_2G00111620 Rroxscaffold_3G00222210 Rroxscaffold_3G00222250 Rroxscaffold_4G00316280 Rroxscaffold_4G00323300 Rroxscaffold_4G00325490 Rroxscaffold_6G00396710 Rroxscaffold_6G00411010 Rroxscaffold_7G00195780 Rroxscaffold_7G00199210 Rroxscaffold_7G00199220
rosa_rugosa	Rorug05G0523200 Rorug07G0313100 Rorug07G0317800 Rorug07G0318200 Rorug07G0318400 Rorug07G0318500 Rorug07G0318600
rosa_samantha	Rh1AG201600 Rh1CG186500 Rh7AG473500 Rh7AG473800 Rh7AG474100 Rh7AG474300 Rh7BG443400 Rh7BG443700 Rh7BG444000 Rh7BG444100 Rh7BG444600 Rh7CG490600 Rh7CG490900 Rh7DG458800 Rh7DG459100
rosa_wichuraiana	Rw0G003450 Rw7G038980 Rw7G039040 Rw7G039070 Rw7G039390 Rw7G039450 Rw7G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	108, 307
AciI	CCGC	5 cut(s)	26, 38, 50, 171, 174
AclWI	GGATC	1 cut(s)	219
AcuI	CTGAAG	1 cut(s)	191
AfaI	GTAC	1 cut(s)	234
AfiI	CCNNNNNNNGG	2 cut(s)	195, 317
AgeI	ACCGGT	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	2 cut(s)	44, 362
AluI	AGCT	2 cut(s)	44, 362
Alw26I	GTCTC	2 cut(s)	15, 348
AlwI	GGATC	1 cut(s)	219
AsiGI	ACCGGT	1 cut(s)	148
AspS9I	GGNCC	2 cut(s)	83, 88
AsuC2I	CCSGG	2 cut(s)	81, 92
AsuHPI	GGTGA	1 cut(s)	178
AvaII	GGWCC	2 cut(s)	83, 88
BaeGI	GKGCMC	1 cut(s)	111
BanI	GGYRCC	2 cut(s)	108, 307
BccI	CCATC	2 cut(s)	66, 344
BceAI	ACGGC	2 cut(s)	39, 53
BciT130I	CCWGG	1 cut(s)	7
BcnI	CCSGG	2 cut(s)	81, 92
BcoDI	GTCTC	2 cut(s)	15, 348
BfaI	CTAG	1 cut(s)	266
BisI	GCNGC	2 cut(s)	27, 174
BlsI	GCNGC	2 cut(s)	28, 175
Bme1390I	CCNGG	3 cut(s)	7, 81, 92
Bme18I	GGWCC	2 cut(s)	83, 88
BmgT120I	GGNCC	2 cut(s)	83, 88
BmiI	GGNNCC	3 cut(s)	90, 110, 309
BmrFI	CCNGG	3 cut(s)	7, 81, 92
BpuMI	CCSGG	2 cut(s)	81, 92
Bsa29I	ATCGAT	1 cut(s)	223
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	3 cut(s)	85, 148, 227
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 317
Bse118I	RCCGGY	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	7
BseCI	ATCGAT	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	189
BseLI	CCNNNNNNNGG	2 cut(s)	195, 317
BseRI	GAGGAG	1 cut(s)	53
BseSI	GKGCMC	1 cut(s)	111
Bsh1285I	CGRYCG	1 cut(s)	153
BshNI	GGYRCC	2 cut(s)	108, 307
BshTI	ACCGGT	1 cut(s)	148
BshVI	ATCGAT	1 cut(s)	223
BsiEI	CGRYCG	1 cut(s)	153
BsiSI	CCGG	5 cut(s)	81, 86, 92, 149, 228
BslI	CCNNNNNNNGG	2 cut(s)	195, 317
BsmAI	GTCTC	2 cut(s)	15, 348
Bso31I	GGTCTC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp1407I	TGTACA	1 cut(s)	232
Bsp143I	GATC	3 cut(s)	125, 220, 224
BspACI	CCGC	5 cut(s)	26, 38, 50, 171, 174
BspDI	ATCGAT	1 cut(s)	223
BspLI	GGNNCC	3 cut(s)	90, 110, 309
BspPI	GGATC	1 cut(s)	219
BspQI	GCTCTTC	1 cut(s)	369
BspT107I	GGYRCC	2 cut(s)	108, 307
BspTNI	GGTCTC	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	148
BsrGI	TGTACA	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	3 cut(s)	125, 220, 224
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	2 cut(s)	18, 256
Bst6I	CTCTTC	1 cut(s)	369
BstAUI	TGTACA	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	36
BstKTI	GATC	3 cut(s)	128, 223, 227
BstMAI	GTCTC	2 cut(s)	15, 348
BstMBI	GATC	3 cut(s)	125, 220, 224
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	3 cut(s)	5, 79, 90
BstSLI	GKGCMC	1 cut(s)	111
Bsu15I	ATCGAT	1 cut(s)	223
BsuTUI	ATCGAT	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	83, 88
ClaI	ATCGAT	1 cut(s)	223
CpoI	CGGWCCG	1 cut(s)	83
CsiI	ACCWGGT	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	233
CspAI	ACCGGT	1 cut(s)	148
CspI	CGGWCCG	1 cut(s)	83
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	5 cut(s)	44, 156, 199, 347, 362
CviKI_1	RGCY	5 cut(s)	44, 156, 199, 347, 362
CviQI	GTAC	1 cut(s)	233
DpnI	GATC	3 cut(s)	127, 222, 226
DpnII	GATC	3 cut(s)	125, 220, 224
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	2 cut(s)	83, 88
Eco57I	CTGAAG	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	5
FaeI	CATG	1 cut(s)	319
FaiI	YATR	2 cut(s)	317, 369
FatI	CATG	1 cut(s)	315
FauI	CCCGC	1 cut(s)	178
Fnu4HI	GCNGC	2 cut(s)	27, 174
Fsp4HI	GCNGC	2 cut(s)	27, 174
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	2 cut(s)	27, 174
HapII	CCGG	5 cut(s)	81, 86, 92, 149, 228
Hin1II	CATG	1 cut(s)	319
HindIII	AAGCTT	1 cut(s)	42
HinfI	GANTC	1 cut(s)	277
HpaII	CCGG	5 cut(s)	81, 86, 92, 149, 228
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	2 cut(s)	21, 233
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	2 cut(s)	21, 233
Hpy99I	CGWCG	2 cut(s)	18, 74
HpyAV	CCTTC	3 cut(s)	187, 269, 320
HpyCH4III	ACNGT	2 cut(s)	18, 256
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	319
Kzo9I	GATC	3 cut(s)	125, 220, 224
LguI	GCTCTTC	1 cut(s)	369
LpnPI	CCDG	8 cut(s)	19, 20, 94, 99, 105, 162, 241, 368
MabI	ACCWGGT	1 cut(s)	5
MaeI	CTAG	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	3 cut(s)	127, 222, 226
MboI	GATC	3 cut(s)	125, 220, 224
MboII	GAAGA	4 cut(s)	194, 197, 335, 356
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	2 cut(s)	302, 398
MnlI	CCTC	2 cut(s)	74, 199
MspI	CCGG	5 cut(s)	81, 86, 92, 149, 228
MspR9I	CCNGG	3 cut(s)	7, 81, 92
MvaI	CCWGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	35
NciI	CCSGG	2 cut(s)	81, 92
NdeII	GATC	3 cut(s)	125, 220, 224
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	3 cut(s)	90, 110, 309
PciSI	GCTCTTC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	277
PflFI	GACNNNGTC	1 cut(s)	7
PinAI	ACCGGT	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	28, 175
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	3 cut(s)	90, 110, 309
PspPI	GGNCC	2 cut(s)	83, 88
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
Rsr2I	CGGWCCG	1 cut(s)	83
RsrII	CGGWCCG	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	369
SatI	GCNGC	2 cut(s)	27, 174
Sau3AI	GATC	3 cut(s)	125, 220, 224
Sau96I	GGNCC	2 cut(s)	83, 88
ScrFI	CCNGG	3 cut(s)	7, 81, 92
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	6 cut(s)	11, 46, 191, 250, 331, 364
SexAI	ACCWGGT	1 cut(s)	5
SinI	GGWCC	2 cut(s)	83, 88
Sse9I	AATT	2 cut(s)	302, 398
SsiI	CCGC	5 cut(s)	26, 38, 50, 171, 174
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	3 cut(s)	5, 79, 90
TaaI	ACNGT	2 cut(s)	18, 256
TaqI	TCGA	2 cut(s)	13, 223
TaqII	GACCGA	1 cut(s)	138
TasI	AATT	2 cut(s)	302, 398
TatI	WGTACW	1 cut(s)	232
TauI	GCSGC	2 cut(s)	29, 176
TfiI	GAWTC	1 cut(s)	277
TspDTI	ATGAA	3 cut(s)	251, 304, 356
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	2 cut(s)	83, 88
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.