Rroxscaffold_6G00411010

tRNA-dihydrouridine(47) synthase NAD(P)( )

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
33550321 .. 33552999
2679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411010.1

Sequence Viewer

Length: 366 bp
ATGGACTCGCCGAGGGGACATTCATCCGAGGATTTGTTTGGCGTTCGGATATGTGGGGTATATCCGTACACCGTAGCACGCACCGTTGAACTTATAGAACAGGAATGTACCGTAGACTTCATTGATATAAATATGGGGTGCCCAATAGATATGGTTGTGAAAGAGTTGGTGCCATTCATGGGAGAAGAAGGTTTAGAATTAAAGGAAGTCGATGGAGACAAAGCTCTTCACATCTCGGTTTTCCGAAGTAAGGAAAGAAACAAGAGCAAAAAGAAGGAGATATGTGCAATTGATGGAGAATTGTGGACTCTTGATGAATCAAGGAAGCTTAAGGCAAATATGGAGAAAAAGATATTCAGCAATTAA

Protein Analysis

121

Amino Acids

13.77

Weight (kDa)

5.11

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 138, 169
AccI GTMKAC 1 cut(s) 114
AfaI GTAC 2 cut(s) 68, 109
AfiI CCNNNNNNNGG 2 cut(s) 179, 250
AflII CTTAAG 1 cut(s) 329
AgsI TTSAA 1 cut(s) 89
AluBI AGCT 2 cut(s) 224, 328
AluI AGCT 2 cut(s) 224, 328
Alw26I GTCTC 1 cut(s) 210
BaeGI GKGCMC 1 cut(s) 143
BanI GGYRCC 2 cut(s) 138, 169
BccI CCATC 2 cut(s) 206, 287
BcoDI GTCTC 1 cut(s) 210
BfrI CTTAAG 1 cut(s) 329
BmiI GGNNCC 2 cut(s) 140, 171
BsaJI CCNNGG 2 cut(s) 11, 27
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 250
BseDI CCNNGG 2 cut(s) 11, 27
BseGI GGATG 1 cut(s) 23
BseLI CCNNNNNNNGG 2 cut(s) 179, 250
BseSI GKGCMC 1 cut(s) 143
BshNI GGYRCC 2 cut(s) 138, 169
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 2 cut(s) 179, 250
BsmAI GTCTC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 143
BspLI GGNNCC 2 cut(s) 140, 171
BspQI GCTCTTC 1 cut(s) 231
BspT107I GGYRCC 2 cut(s) 138, 169
BspTI CTTAAG 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 11, 27
Bst4CI ACNGT 3 cut(s) 73, 85, 112
Bst6I CTCTTC 1 cut(s) 231
BstAFI CTTAAG 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 79
BstF5I GGATG 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 79
Csp6I GTAC 2 cut(s) 67, 108
CviAII CATG 1 cut(s) 178
CviJI RGCY 2 cut(s) 224, 328
CviKI_1 RGCY 2 cut(s) 224, 328
CviQI GTAC 2 cut(s) 67, 108
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
FaeI CATG 1 cut(s) 181
FaiI YATR 9 cut(s) 52, 61, 95, 128, 134, 152, 179, 283, 341
FaqI GGGAC 1 cut(s) 30
FatI CATG 1 cut(s) 177
FblI GTMKAC 1 cut(s) 114
FokI GGATG 1 cut(s) 10
Hin1II CATG 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 3 cut(s) 5, 307, 317
Hpy166II GTNNAC 3 cut(s) 69, 115, 306
Hpy188I TCNGA 3 cut(s) 28, 48, 245
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 3 cut(s) 69, 115, 306
HpyAV CCTTC 2 cut(s) 182, 268
HpyCH4III ACNGT 3 cut(s) 73, 85, 112
HpyCH4V TGCA 1 cut(s) 287
Hsp92II CATG 1 cut(s) 181
LguI GCTCTTC 1 cut(s) 231
LpnPI CCDG 1 cut(s) 86
MboII GAAGA 2 cut(s) 197, 218
MfeI CAATTG 1 cut(s) 288
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 4 cut(s) 197, 288, 299, 361
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 2 cut(s) 6, 22
MseI TTAA 3 cut(s) 200, 330, 364
MspCI CTTAAG 1 cut(s) 329
MunI CAATTG 1 cut(s) 288
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 2 cut(s) 140, 171
NmeAIII GCCGAG 1 cut(s) 36
PciSI GCTCTTC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 317
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PspN4I GGNNCC 2 cut(s) 140, 171
RsaI GTAC 2 cut(s) 68, 109
RsaNI GTAC 2 cut(s) 67, 108
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 3 cut(s) 200, 330, 364
SchI GAGTC 1 cut(s) 301
SduI GDGCHC 1 cut(s) 143
SetI ASST 3 cut(s) 193, 226, 330
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 4 cut(s) 197, 288, 299, 361
TaaI ACNGT 3 cut(s) 73, 85, 112
TaqI TCGA 1 cut(s) 210
TasI AATT 4 cut(s) 197, 288, 299, 361
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 3 cut(s) 200, 330, 364
Tru9I TTAA 3 cut(s) 200, 330, 364
TspDTI ATGAA 4 cut(s) 12, 109, 166, 330
TspGWI ACGGA 1 cut(s) 54
Vha464I CTTAAG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.