Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000952

Physical Location & Seq

Genomic Coordinates Forward (+)

46796196 .. 46796465

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00032610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGTTGATGAAGCTGAAATTCGTGCCATCAACAACTTCATGATTTATACACTTCTACGAGGGCAGCGCAGCCGTCGTTTTGGTTGCCGCTGGAAAAGTAGAAACGAGCGAGAAGCGAGAGGATATCTATCGACCATGGACGTAACCACCGTCGTCGACTCCCTCCGGCATAGAGTTCAGGAATTAGAGGCATTAAATGCCAAATTGTCATCTCAACTCGCAGCTTGTCGCCGGCATCGCAACAGGACAAGACCGAAGACTCTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990481

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

89

Amino Acids

10.5

Weight (kDa)

11.22

Isoelectric Point (pI)

59.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36310 FvH4_5g36321 FvH4_5g36321 FvH4_5g36321 FvH4_5g36330 FvH4_5g36641 FvH4_5g36641 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090
rosa_chinensis	RchiOBHm_Chr7g0242961 RchiOBHm_Chr7g0242971 RchiOBHm_Chr7g0243041 RchiOBHm_Chr7g0243171
rosa_laevigata	RLG00000000855 RLG00000000860 RLG00000000865 RLG00000018514
rosa_multiflora	Rmu_sc0004165.1_g000086 Rmu_sc0006141.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032610 Rroxscaffold_2G00111620 Rroxscaffold_3G00222210 Rroxscaffold_3G00222250 Rroxscaffold_4G00316280 Rroxscaffold_4G00323300 Rroxscaffold_4G00325490 Rroxscaffold_6G00396710 Rroxscaffold_6G00411010 Rroxscaffold_7G00195780 Rroxscaffold_7G00199210 Rroxscaffold_7G00199220
rosa_rugosa	Rorug05G0523200 Rorug07G0313100 Rorug07G0317800 Rorug07G0318200 Rorug07G0318400 Rorug07G0318500 Rorug07G0318600
rosa_samantha	Rh1AG201600 Rh1CG186500 Rh7AG473500 Rh7AG473800 Rh7AG474100 Rh7AG474300 Rh7BG443400 Rh7BG443700 Rh7BG444000 Rh7BG444100 Rh7BG444600 Rh7CG490600 Rh7CG490900 Rh7DG458800 Rh7DG459100
rosa_wichuraiana	Rw0G003450 Rw7G038980 Rw7G039040 Rw7G039070 Rw7G039390 Rw7G039450 Rw7G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	18
AluBI	AGCT	2 cut(s)	14, 224
AluI	AGCT	2 cut(s)	14, 224
ApeKI	GCWGC	3 cut(s)	64, 69, 221
ApoI	RAATTY	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	263
BbvI	GCAGC	3 cut(s)	76, 81, 233
BccI	CCATC	1 cut(s)	35
BceAI	ACGGC	1 cut(s)	57
BisI	GCNGC	4 cut(s)	65, 70, 88, 222
BlsI	GCNGC	4 cut(s)	66, 71, 89, 223
BmsI	GCATC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	135
Bse118I	RCCGGY	1 cut(s)	231
Bse8I	GATNNNNATC	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	135
BseJI	GATNNNNATC	1 cut(s)	127
BseXI	GCAGC	3 cut(s)	76, 81, 233
BsiSI	CCGG	2 cut(s)	166, 232
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	1 cut(s)	88
BspHI	TCATGA	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	233
BstDSI	CCRYGG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 237
BstV1I	GCAGC	3 cut(s)	76, 81, 233
BstV2I	GAAGAC	1 cut(s)	263
BtgI	CCRYGG	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	221
Cac8I	GCNNGC	1 cut(s)	233
CciI	TCATGA	1 cut(s)	39
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	231
CviAII	CATG	2 cut(s)	40, 136
CviJI	RGCY	3 cut(s)	14, 72, 224
CviKI_1	RGCY	3 cut(s)	14, 72, 224
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	135
Eco32I	GATATC	1 cut(s)	125
EcoRV	GATATC	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	43, 139
FaiI	YATR	5 cut(s)	41, 48, 137, 171, 268
FatI	CATG	2 cut(s)	39, 135
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	4 cut(s)	65, 70, 88, 222
Fsp4HI	GCNGC	4 cut(s)	65, 70, 88, 222
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	4 cut(s)	65, 70, 88, 222
HapII	CCGG	2 cut(s)	166, 232
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	43, 139
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	2 cut(s)	158, 259
HpaII	CCGG	2 cut(s)	166, 232
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188III	TCNNGA	2 cut(s)	40, 179
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	3 cut(s)	78, 155, 158
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 237
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	43, 139
HspAI	GCGC	1 cut(s)	67
KroI	GCCGGC	1 cut(s)	231
KroNI	GCCGGC	1 cut(s)	233
LpnPI	CCDG	5 cut(s)	76, 164, 179, 229, 245
Lsp1109I	GCAGC	3 cut(s)	76, 81, 233
LweI	GCATC	1 cut(s)	244
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	142
MboII	GAAGA	2 cut(s)	254, 268
MluCI	AATT	3 cut(s)	18, 182, 203
MlyI	GAGTC	2 cut(s)	152, 253
MnlI	CCTC	4 cut(s)	53, 113, 173, 181
MroNI	GCCGGC	1 cut(s)	231
MseI	TTAA	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	2 cut(s)	166, 232
MwoI	GCNNNNNNNGC	2 cut(s)	197, 237
NaeI	GCCGGC	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	135
NgoMIV	GCCGGC	1 cut(s)	231
NlaIII	CATG	2 cut(s)	43, 139
PagI	TCATGA	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdiI	GCCGGC	1 cut(s)	233
PkrI	GCNGC	4 cut(s)	66, 71, 89, 223
PleI	GAGTC	2 cut(s)	152, 253
PpsI	GAGTC	2 cut(s)	152, 253
SalI	GTCGAC	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	4 cut(s)	65, 70, 88, 222
SchI	GAGTC	2 cut(s)	152, 253
SetI	ASST	3 cut(s)	16, 144, 226
SfaNI	GCATC	1 cut(s)	244
Sse9I	AATT	3 cut(s)	18, 182, 203
SsiI	CCGC	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	131, 156
TaqII	GACCGA	1 cut(s)	268
TasI	AATT	3 cut(s)	18, 182, 203
TauI	GCSGC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TseI	GCWGC	3 cut(s)	64, 69, 221
TspDTI	ATGAA	2 cut(s)	24, 28
XapI	RAATTY	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.