Rorug07G0318200

spectrin binding

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
32472710 .. 32473102
393 bp
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UTR
Exon/CDS
Intron
Rorug07G0318200.1

Sequence Viewer

Length: 393 bp
ATGTCCCAAGCCAGAAAAGCACCACCTCATTCCAGCCAAGTGCCATACACCACAACACTGATCTCCCGCTCTGAATTTACTTACAGCATTCCCATAACGACCGGCCAAAAGTTCATTCGCTTGTATTTCTATCCTGTTTCCTATCCCAACTTCACTCGGTCAGATGCCCTTTTCTTTGTCACAGCCAGTGGCTATGCCCTTCTCAACAACTTCAATGCTTCTCTTAATACAAATGCTGAAAATGTGGAGACAATATACAAGGAATTCTGTTTGAACGTTGATACATCTAATACTCTATCTCTAACATTCAGTCCCAGCAGGATAAGCTCGAATGCATACGCCTTTATCAATGGAATTGAAATTGTGTCGATGCCAACTTACCCTTTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

14.61

Weight (kDa)

7.83

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 69
AciI CCGC 1 cut(s) 67
AclI AACGTT 1 cut(s) 276
AcoI YGGCCR 1 cut(s) 103
AcsI RAATTY 2 cut(s) 74, 263
AgsI TTSAA 3 cut(s) 214, 274, 359
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AluBI AGCT 1 cut(s) 327
AluI AGCT 1 cut(s) 327
Alw26I GTCTC 1 cut(s) 242
AoxI GGCC 1 cut(s) 103
ApoI RAATTY 2 cut(s) 74, 263
BcoDI GTCTC 1 cut(s) 242
BmsI GCATC 2 cut(s) 154, 360
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 186
BseYI CCCAGC 1 cut(s) 314
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 102
BsiSI CCGG 1 cut(s) 102
BslFI GGGAC 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 297
BsmI GAATGC 2 cut(s) 87, 337
BsnI GGCC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 1 cut(s) 67
BspANI GGCC 1 cut(s) 105
BsrBI CCGCTC 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 101
BssMI GATC 1 cut(s) 60
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 1 cut(s) 60
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 2 cut(s) 17, 324
BsuRI GGCC 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 56, 193
Cfr10I RCCGGY 1 cut(s) 101
CviJI RGCY 6 cut(s) 11, 36, 105, 185, 192, 327
CviKI_1 RGCY 6 cut(s) 11, 36, 105, 185, 192, 327
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
EaeI YGGCCR 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 263
EcoT22I ATGCAT 1 cut(s) 337
FaiI YATR 5 cut(s) 46, 95, 195, 256, 337
FaqI GGGAC 1 cut(s) 297
FauI CCCGC 1 cut(s) 74
GsaI CCCAGC 1 cut(s) 318
HaeIII GGCC 1 cut(s) 105
HapII CCGG 1 cut(s) 102
HpaII CCGG 1 cut(s) 102
Hpy188I TCNGA 3 cut(s) 73, 163, 392
HpyAV CCTTC 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 324
HpySE526I ACGT 1 cut(s) 276
Kzo9I GATC 1 cut(s) 60
LpnPI CCDG 7 cut(s) 25, 46, 115, 147, 199, 304, 328
LweI GCATC 2 cut(s) 154, 360
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 178
MalI GATC 1 cut(s) 62
MbiI CCGCTC 1 cut(s) 69
MboI GATC 1 cut(s) 60
MluCI AATT 4 cut(s) 74, 263, 354, 360
MnlI CCTC 1 cut(s) 36
Mph1103I ATGCAT 1 cut(s) 337
MseI TTAA 1 cut(s) 225
MspI CCGG 1 cut(s) 102
Mva1269I GAATGC 2 cut(s) 87, 337
MwoI GCNNNNNNNGC 2 cut(s) 17, 324
NdeII GATC 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 178
NsiI ATGCAT 1 cut(s) 337
PctI GAATGC 2 cut(s) 87, 337
Psp1406I AACGTT 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 314
SaqAI TTAA 1 cut(s) 225
Sau3AI GATC 1 cut(s) 60
SetI ASST 3 cut(s) 28, 279, 329
SfaNI GCATC 2 cut(s) 154, 360
Sse9I AATT 4 cut(s) 74, 263, 354, 360
SsiI CCGC 1 cut(s) 67
TaiI ACGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 329, 368
TaqII GACCGA 1 cut(s) 147
TasI AATT 4 cut(s) 74, 263, 354, 360
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 2 cut(s) 63, 193
TseFI GTSAC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 103
TspRI CASTG 2 cut(s) 63, 193
XapI RAATTY 2 cut(s) 74, 263
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.