Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000952

Physical Location & Seq

Genomic Coordinates Forward (+)

38370655 .. 38371227

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00195780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGACGTAACCACCGTCGTCGACTCCCTCCGGCATAGAGTTCGGGAATTAGAGGCATTAAATGCCAAGTTGTCATCTCAACTCGCAGTTTGTCGCCGCCATCGCAATGGACAAGACCGAAGACTCTTCCAGTTGGTGCTGTTGATGACTCAAGAAGATCCGGAAATAAGAGATGATACCGGTTGCATCGCTCTTCACATAGCCTTAAACAATCGGAATGTGGACACCGGGAAAGAGTTGGTGAAGTGGATGAGAGAACAAGGCTTAGGAATTCAAAACTCTCTCGGTCAAACTGCTCTTCACATAGCGATCTGGATGGATATTTGTCTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990481

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

111

Amino Acids

12.7

Weight (kDa)

6.9

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	41 - 106	8e-08	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36310 FvH4_5g36321 FvH4_5g36321 FvH4_5g36321 FvH4_5g36330 FvH4_5g36641 FvH4_5g36641 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090
rosa_chinensis	RchiOBHm_Chr7g0242961 RchiOBHm_Chr7g0242971 RchiOBHm_Chr7g0243041 RchiOBHm_Chr7g0243171
rosa_laevigata	RLG00000000855 RLG00000000860 RLG00000000865 RLG00000018514
rosa_multiflora	Rmu_sc0004165.1_g000086 Rmu_sc0006141.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032610 Rroxscaffold_2G00111620 Rroxscaffold_3G00222210 Rroxscaffold_3G00222250 Rroxscaffold_4G00316280 Rroxscaffold_4G00323300 Rroxscaffold_4G00325490 Rroxscaffold_6G00396710 Rroxscaffold_6G00411010 Rroxscaffold_7G00195780 Rroxscaffold_7G00199210 Rroxscaffold_7G00199220
rosa_rugosa	Rorug05G0523200 Rorug07G0313100 Rorug07G0317800 Rorug07G0318200 Rorug07G0318400 Rorug07G0318500 Rorug07G0318600
rosa_samantha	Rh1AG201600 Rh1CG186500 Rh7AG473500 Rh7AG473800 Rh7AG474100 Rh7AG474300 Rh7BG443400 Rh7BG443700 Rh7BG444000 Rh7BG444100 Rh7BG444600 Rh7CG490600 Rh7CG490900 Rh7DG458800 Rh7DG459100
rosa_wichuraiana	Rw0G003450 Rw7G038980 Rw7G039040 Rw7G039070 Rw7G039390 Rw7G039450 Rw7G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	21
AccIII	TCCGGA	1 cut(s)	160
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	270
AgeI	ACCGGT	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	275
AlwI	GGATC	1 cut(s)	152
Aor13HI	TCCGGA	1 cut(s)	160
ApoI	RAATTY	1 cut(s)	270
AsiGI	ACCGGT	1 cut(s)	179
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	127
BccI	CCATC	2 cut(s)	108, 310
BcgI	CGANNNNNNTGC	2 cut(s)	23, 57
BcnI	CCSGG	1 cut(s)	229
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
Bme1390I	CCNGG	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	229
BmsI	GCATC	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	127
Bpu10I	CCTNAGC	1 cut(s)	265
BpuEI	CTTGAG	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	229
BsaWI	WCCGGW	2 cut(s)	160, 179
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	112
BseAI	TCCGGA	1 cut(s)	160
BseGI	GGATG	2 cut(s)	255, 321
BseMI	GCAATG	1 cut(s)	112
BseNI	ACTGG	1 cut(s)	130
BshTI	ACCGGT	1 cut(s)	179
BsiSI	CCGG	4 cut(s)	31, 161, 180, 228
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	157, 309
BspACI	CCGC	1 cut(s)	97
BspEI	TCCGGA	1 cut(s)	160
BspPI	GGATC	1 cut(s)	152
BspQI	GCTCTTC	2 cut(s)	198, 303
BsrDI	GCAATG	1 cut(s)	112
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	179
BssMI	GATC	2 cut(s)	157, 309
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	3 cut(s)	131, 198, 303
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	265
BstF5I	GGATG	2 cut(s)	255, 321
BstKTI	GATC	2 cut(s)	160, 312
BstMBI	GATC	2 cut(s)	157, 309
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 102
BstSCI	CCNGG	1 cut(s)	227
BstV2I	GAAGAC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	157
BstXI	CCANNNNNNTGG	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	157
BtgZI	GCGATG	2 cut(s)	86, 172
BtsCI	GGATG	2 cut(s)	255, 321
Cfr10I	RCCGGY	1 cut(s)	179
CspAI	ACCGGT	1 cut(s)	179
CviJI	RGCY	2 cut(s)	203, 264
CviKI_1	RGCY	2 cut(s)	203, 264
DdeI	CTNAG	1 cut(s)	265
DpnI	GATC	2 cut(s)	159, 311
DpnII	GATC	2 cut(s)	157, 309
Eam1104I	CTCTTC	3 cut(s)	131, 198, 303
EarI	CTCTTC	3 cut(s)	131, 198, 303
EcoRI	GAATTC	1 cut(s)	270
FaiI	YATR	3 cut(s)	36, 200, 305
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	97
FokI	GGATG	2 cut(s)	262, 328
Fsp4HI	GCNGC	1 cut(s)	97
GluI	GCNGC	1 cut(s)	97
HapII	CCGG	4 cut(s)	31, 161, 180, 228
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	3 cut(s)	23, 123, 148
HpaII	CCGG	4 cut(s)	31, 161, 180, 228
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	2 cut(s)	22, 223
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	4 cut(s)	44, 152, 161, 313
Hpy8I	GTNNAC	2 cut(s)	22, 223
Hpy99I	CGWCG	2 cut(s)	20, 23
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	186
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 102
HpyF3I	CTNAG	1 cut(s)	265
HpySE526I	ACGT	1 cut(s)	6
Kpn2I	TCCGGA	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	157, 309
LguI	GCTCTTC	2 cut(s)	198, 303
LpnPI	CCDG	6 cut(s)	44, 143, 174, 193, 241, 298
LweI	GCATC	1 cut(s)	195
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	2 cut(s)	159, 311
MboI	GATC	2 cut(s)	157, 309
MboII	GAAGA	5 cut(s)	118, 132, 167, 185, 290
MflI	RGATCY	1 cut(s)	157
MluCI	AATT	2 cut(s)	47, 270
MlyI	GAGTC	3 cut(s)	17, 117, 142
MnlI	CCTC	2 cut(s)	38, 46
MroI	TCCGGA	1 cut(s)	160
MseI	TTAA	2 cut(s)	59, 206
MslI	CAYNNNNRTG	1 cut(s)	105
MspI	CCGG	4 cut(s)	31, 161, 180, 228
MspR9I	CCNGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	2 cut(s)	62, 102
NciI	CCSGG	1 cut(s)	229
NdeII	GATC	2 cut(s)	157, 309
PciSI	GCTCTTC	2 cut(s)	198, 303
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PinAI	ACCGGT	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	98
PleI	GAGTC	3 cut(s)	17, 117, 142
PpsI	GAGTC	3 cut(s)	17, 117, 142
PsuI	RGATCY	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	105
SalI	GTCGAC	1 cut(s)	20
SapI	GCTCTTC	2 cut(s)	198, 303
SaqAI	TTAA	2 cut(s)	59, 206
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	2 cut(s)	157, 309
SchI	GAGTC	3 cut(s)	17, 117, 142
ScrFI	CCNGG	1 cut(s)	229
SetI	ASST	1 cut(s)	9
SfaNI	GCATC	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	2 cut(s)	47, 270
SsiI	CCGC	1 cut(s)	97
StyD4I	CCNGG	1 cut(s)	227
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	1 cut(s)	21
TaqII	GACCGA	2 cut(s)	132, 275
TasI	AATT	2 cut(s)	47, 270
TauI	GCSGC	1 cut(s)	99
Tru1I	TTAA	2 cut(s)	59, 206
Tru9I	TTAA	2 cut(s)	59, 206
XapI	RAATTY	1 cut(s)	270
XmiI	GTMKAC	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.