Rroxscaffold_2G00111620

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
36263888 .. 36264606
719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111620.1

Sequence Viewer

Length: 357 bp
ATGAAGGCTGTTATGGTTGATGAAGCGAAATTCTATGCCATCAACAACTTCATGATTTATACACTTCTACGAGGGCAGCGCAGCCGTCGTTTTGGTTGCCGCCGGAAAAGTAGAAACGAGCGAAGCAAAGGATACCTATTGACCATGGACGTAACCACCGTCGTCGACTCCCTCGAAGATGCGGAAATAAGAGATGATATCGGTTGCCTTGCTCTTCACATAGCCTTAAACAATCGGAATGTGGACAACGGGAAAGAATTGGTGAAGTGGATGAGAGAACAAGGCTTAGGAATTCAAAACTCTCTCGGTCAAACCGCTCTTCACATAGCGATCTGGATGGGATATTTGTCGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0000166 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006900 GO:0006901 GO:0006903 GO:0006915 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0006996 GO:0007154 GO:0007165 GO:0007166 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008625 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010469 GO:0010506 GO:0010508 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017075 GO:0017076 GO:0017148 GO:0019222 GO:0019538 GO:0019905 GO:0022607 GO:0022898 GO:0023051 GO:0023052 GO:0023057 GO:0030162 GO:0030554 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032270 GO:0032409 GO:0032412 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0033194 GO:0033554 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034599 GO:0034762 GO:0034765 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042802 GO:0042981 GO:0043065 GO:0043066 GO:0043067 GO:0043068 GO:0043069 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043269 GO:0043280 GO:0043281 GO:0043412 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045862 GO:0046777 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061024 GO:0065003 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071447 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090114 GO:0097159 GO:0097190 GO:0097191 GO:0097367 GO:0099601 GO:0140096 GO:1900449 GO:1901265 GO:1901363 GO:1901564 GO:1901700 GO:1901701 GO:1902041 GO:1902042 GO:1904062 GO:2000112 GO:2000113 GO:2000116 GO:2000310 GO:2001056 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001257
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.54

Weight (kDa)

9.3

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 59 - 116 2.9e-06 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 317
AccI GTMKAC 1 cut(s) 165
AciI CCGC 3 cut(s) 100, 182, 315
AcsI RAATTY 2 cut(s) 29, 291
AgsI TTSAA 1 cut(s) 296
ApeKI GCWGC 2 cut(s) 76, 81
ApoI RAATTY 2 cut(s) 29, 291
AspLEI GCGC 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 274
BbvI GCAGC 2 cut(s) 88, 93
BccI CCATC 2 cut(s) 47, 331
BceAI ACGGC 1 cut(s) 69
BciVI GTATCC 1 cut(s) 125
BfuI GTATCC 1 cut(s) 125
BisI GCNGC 3 cut(s) 77, 82, 100
BlsI GCNGC 3 cut(s) 78, 83, 101
BmsI GCATC 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 286
BsaJI CCNNGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 2 cut(s) 276, 342
BseXI GCAGC 2 cut(s) 88, 93
BsiSI CCGG 1 cut(s) 103
Bsp143I GATC 1 cut(s) 330
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 3 cut(s) 100, 182, 315
BspHI TCATGA 1 cut(s) 51
BspQI GCTCTTC 2 cut(s) 219, 324
BsrBI CCGCTC 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 1 cut(s) 330
BssT1I CCWWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 2 cut(s) 219, 324
BstDEI CTNAG 1 cut(s) 286
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 276, 342
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 1 cut(s) 333
BstMBI GATC 1 cut(s) 330
BstV1I GCAGC 2 cut(s) 88, 93
BsuI GTATCC 1 cut(s) 125
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 2 cut(s) 276, 342
CciI TCATGA 1 cut(s) 51
CfoI GCGC 1 cut(s) 81
CviAII CATG 2 cut(s) 52, 145
CviJI RGCY 4 cut(s) 8, 84, 224, 285
CviKI_1 RGCY 4 cut(s) 8, 84, 224, 285
DdeI CTNAG 1 cut(s) 286
DpnI GATC 1 cut(s) 332
DpnII GATC 1 cut(s) 330
Eam1104I CTCTTC 2 cut(s) 219, 324
EarI CTCTTC 2 cut(s) 219, 324
Eco130I CCWWGG 1 cut(s) 144
Eco32I GATATC 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 291
EcoRV GATATC 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 2 cut(s) 55, 148
FaiI YATR 7 cut(s) 14, 36, 53, 60, 146, 221, 326
FatI CATG 2 cut(s) 51, 144
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 3 cut(s) 77, 82, 100
FokI GGATG 2 cut(s) 283, 349
Fsp4HI GCNGC 3 cut(s) 77, 82, 100
GlaI GCGC 1 cut(s) 80
GluI GCNGC 3 cut(s) 77, 82, 100
HapII CCGG 1 cut(s) 103
HhaI GCGC 1 cut(s) 81
Hin1II CATG 2 cut(s) 55, 148
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 1 cut(s) 167
HpaII CCGG 1 cut(s) 103
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 2 cut(s) 166, 244
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 2 cut(s) 52, 334
Hpy8I GTNNAC 2 cut(s) 166, 244
Hpy99I CGWCG 3 cut(s) 90, 164, 167
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 150
HpyF3I CTNAG 1 cut(s) 286
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 2 cut(s) 55, 148
HspAI GCGC 1 cut(s) 79
Kzo9I GATC 1 cut(s) 330
LguI GCTCTTC 2 cut(s) 219, 324
LpnPI CCDG 2 cut(s) 116, 319
Lsp1109I GCAGC 2 cut(s) 88, 93
LweI GCATC 1 cut(s) 169
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 151
MalI GATC 1 cut(s) 332
MbiI CCGCTC 1 cut(s) 317
MboI GATC 1 cut(s) 330
MboII GAAGA 3 cut(s) 188, 206, 311
MluCI AATT 3 cut(s) 29, 257, 291
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 2 cut(s) 65, 182
MseI TTAA 1 cut(s) 227
MspI CCGG 1 cut(s) 103
NcoI CCATGG 1 cut(s) 144
NdeII GATC 1 cut(s) 330
NlaIII CATG 2 cut(s) 55, 148
PagI TCATGA 1 cut(s) 51
PciSI GCTCTTC 2 cut(s) 219, 324
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 171
PkrI GCNGC 3 cut(s) 78, 83, 101
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
SalI GTCGAC 1 cut(s) 164
SapI GCTCTTC 2 cut(s) 219, 324
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 3 cut(s) 77, 82, 100
Sau3AI GATC 1 cut(s) 330
SchI GAGTC 1 cut(s) 161
SetI ASST 2 cut(s) 138, 153
SfaNI GCATC 1 cut(s) 169
Sse9I AATT 3 cut(s) 29, 257, 291
SsiI CCGC 3 cut(s) 100, 182, 315
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 165, 174
TaqII GACCGA 1 cut(s) 296
TasI AATT 3 cut(s) 29, 257, 291
TauI GCSGC 1 cut(s) 102
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TseI GCWGC 2 cut(s) 76, 81
TspDTI ATGAA 3 cut(s) 17, 36, 40
XapI RAATTY 2 cut(s) 29, 291
XmiI GTMKAC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.