Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000952

Physical Location & Seq

Genomic Coordinates Forward (+)

70903898 .. 70904958

Gene Structure 1061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0523200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGGTGGACCATGGAATTTCAATTGGGCTTTGGTTGTTATTCAACCTTATGATGGAGTGGAACCTCTGCAATATGTAGAGATGGAGGATCTTTTCTTTTGGGTTCGGATTACCAATATGCCACCAGCATATGAGCAGAGGAAAACTATTGCCAACGTTGCCTCGGTTGCTGGTAAATTTCTTCATCTAGATCAAAAGCTATTTGATGCAACTCGTGATATTAGGATTAGGGTTTCTCATGCAATTTCGAAACCTTTCTTCATGCAAAAAACCCTAAAGTTTGCCACAGGGGTTGAGCAAGAGGTTCACTTCTTCTTTGAAAATCTGGTGGGCAAATGCAATACTTGCCATTGTGTGTATCATAAGGGTGATGCATGTAAGGCTGAAGATACCGCGCCAACAAGCATGGCTACTCCTTCGCCGACGGCAAGAAAATTGGAACTTGATGGTCCTTTTTTGGGGTCTCTTTTTGGAAGGGCGGAGACAAGTAAGGTACGCAAGCCCATTGTTATTTGTAATGCAGAGAAAAAACAAGCTAATGAGGATAATGCTTTGGCTCTGGTACCCGTCAACACTGACCAGTCTGCAAAGAGGGATTGTCCCTTCCCATCTCCAAAGAAGCTGCAATTTTTGATGTCTGATTTAGTGGAGGGTAAAACTAGCCCTATTGCTCCCTCAAAGAAGGTGAAGATGCCTGAATTCCCTACAAAGTTTAATGCAAAATCTCTTGGATTAGTGGAGACACCGGGTGGTTTGCTAGTGCCTGTGGAGGTTATGATGCCTAAACCAGTCAAAGTAGAGCTTCCTGAAGGCAAGAAGAAGAGAGGTAGGCCGTTGGGAGCCAAGAACAAAAATCCTCCCAAAGCGAAAAAGGTTCCTGCTGAAGATGTCCTGAGTGTTCTGTATTCAGGTAAGCCTCCAAGCCCTAGTCGAAACTCTAAAGGGCAAGGAGAAGATATAGGGTTTTTTCTTTATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005381 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006824 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008324 GO:0009267 GO:0009605 GO:0009705 GO:0009987 GO:0009991 GO:0010106 GO:0015075 GO:0015087 GO:0015318 GO:0015675 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0034755 GO:0035444 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055068 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071496 GO:0071944 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04216 ko04978 map04216 map04978

Pfam Domains

Protein Families

FPN1

Protein Analysis

326

Amino Acids

36.12

Weight (kDa)

9.37

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36310 FvH4_5g36321 FvH4_5g36321 FvH4_5g36321 FvH4_5g36330 FvH4_5g36641 FvH4_5g36641 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090
rosa_chinensis	RchiOBHm_Chr7g0242961 RchiOBHm_Chr7g0242971 RchiOBHm_Chr7g0243041 RchiOBHm_Chr7g0243171
rosa_laevigata	RLG00000000855 RLG00000000860 RLG00000000865 RLG00000018514
rosa_multiflora	Rmu_sc0004165.1_g000086 Rmu_sc0006141.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032610 Rroxscaffold_2G00111620 Rroxscaffold_3G00222210 Rroxscaffold_3G00222250 Rroxscaffold_4G00316280 Rroxscaffold_4G00323300 Rroxscaffold_4G00325490 Rroxscaffold_6G00396710 Rroxscaffold_6G00411010 Rroxscaffold_7G00195780 Rroxscaffold_7G00199210 Rroxscaffold_7G00199220
rosa_rugosa	Rorug05G0523200 Rorug07G0313100 Rorug07G0317800 Rorug07G0318200 Rorug07G0318400 Rorug07G0318500 Rorug07G0318600
rosa_samantha	Rh1AG201600 Rh1CG186500 Rh7AG473500 Rh7AG473800 Rh7AG474100 Rh7AG474300 Rh7BG443400 Rh7BG443700 Rh7BG444000 Rh7BG444100 Rh7BG444600 Rh7CG490600 Rh7CG490900 Rh7DG458800 Rh7DG459100
rosa_wichuraiana	Rw0G003450 Rw7G038980 Rw7G039040 Rw7G039070 Rw7G039390 Rw7G039450 Rw7G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	562
AccB1I	GGYRCC	1 cut(s)	562
AccII	CGCG	1 cut(s)	395
AciI	CCGC	2 cut(s)	393, 479
AclI	AACGTT	1 cut(s)	156
AclWI	GGATC	1 cut(s)	96
AcsI	RAATTY	3 cut(s)	16, 176, 698
AcuI	CTGAAG	3 cut(s)	405, 828, 903
AdeI	CACNNNGTG	1 cut(s)	749
AfaI	GTAC	2 cut(s)	495, 564
AfiI	CCNNNNNNNGG	2 cut(s)	53, 458
AgsI	TTSAA	3 cut(s)	22, 44, 320
AluBI	AGCT	4 cut(s)	199, 536, 622, 802
AluI	AGCT	4 cut(s)	199, 536, 622, 802
Alw26I	GTCTC	3 cut(s)	468, 476, 734
AlwI	GGATC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	830
ApeKI	GCWGC	1 cut(s)	622
ApoI	RAATTY	3 cut(s)	16, 176, 698
Asp700I	GAANNNNTTC	1 cut(s)	254
Asp718I	GGTACC	1 cut(s)	562
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	2 cut(s)	8, 449
AsuC2I	CCSGG	1 cut(s)	747
AsuHPI	GGTGA	2 cut(s)	380, 697
AsuII	TTCGAA	1 cut(s)	248
AvaII	GGWCC	2 cut(s)	8, 449
BanI	GGYRCC	1 cut(s)	562
BauI	CACGAG	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	609
BccI	CCATC	4 cut(s)	47, 76, 440, 616
BceAI	ACGGC	2 cut(s)	441, 817
BcnI	CCSGG	1 cut(s)	747
BcoDI	GTCTC	3 cut(s)	468, 476, 734
BfaI	CTAG	4 cut(s)	188, 660, 758, 927
BisI	GCNGC	1 cut(s)	623
BlsI	GCNGC	1 cut(s)	624
Bme1390I	CCNGG	1 cut(s)	747
Bme18I	GGWCC	2 cut(s)	8, 449
BmgT120I	GGNCC	2 cut(s)	8, 449
BmiI	GGNNCC	4 cut(s)	63, 564, 841, 876
BmrFI	CCNGG	1 cut(s)	747
BmsI	GCATC	4 cut(s)	196, 361, 681, 768
Bpu14I	TTCGAA	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	747
BsaI	GGTCTC	1 cut(s)	468
BsaJI	CCNNGG	2 cut(s)	11, 162
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 458
Bse1I	ACTGG	2 cut(s)	580, 788
BseDI	CCNNGG	2 cut(s)	11, 162
BseLI	CCNNNNNNNGG	2 cut(s)	53, 458
BseMII	CTCAG	1 cut(s)	884
BseNI	ACTGG	2 cut(s)	580, 788
BseXI	GCAGC	1 cut(s)	609
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	1 cut(s)	832
BshNI	GGYRCC	1 cut(s)	562
BsiSI	CCGG	1 cut(s)	746
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	2 cut(s)	53, 458
BsmAI	GTCTC	3 cut(s)	468, 476, 734
BsmFI	GGGAC	1 cut(s)	585
BsnI	GGCC	1 cut(s)	832
Bso31I	GGTCTC	1 cut(s)	468
Bsp119I	TTCGAA	1 cut(s)	248
Bsp143I	GATC	2 cut(s)	88, 190
Bsp19I	CCATGG	1 cut(s)	11
BspACI	CCGC	2 cut(s)	393, 479
BspANI	GGCC	1 cut(s)	832
BspCNI	CTCAG	1 cut(s)	885
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	4 cut(s)	63, 564, 841, 876
BspPI	GGATC	1 cut(s)	96
BspT104I	TTCGAA	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	562
BspTNI	GGTCTC	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	580, 788
BssECI	CCNNGG	2 cut(s)	11, 162
BssMI	GATC	2 cut(s)	88, 190
BssSI	CACGAG	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	11
Bst2BI	CACGAG	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	815
BstAPI	GCANNNNNTGC	1 cut(s)	345
BstBI	TTCGAA	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	500
BstDEI	CTNAG	1 cut(s)	893
BstDSI	CCRYGG	1 cut(s)	11
BstFNI	CGCG	1 cut(s)	395
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	2 cut(s)	91, 193
BstMAI	GTCTC	3 cut(s)	468, 476, 734
BstMBI	GATC	2 cut(s)	88, 190
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 167, 345, 380
BstNSI	RCATGY	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	745
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	1 cut(s)	609
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	832
BtgI	CCRYGG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	1 cut(s)	500
CfoI	GCGC	1 cut(s)	397
Cfr13I	GGNCC	2 cut(s)	8, 449
Csp6I	GTAC	2 cut(s)	494, 563
CspCI	CAANNNNNGTGG	2 cut(s)	274, 309
CviAII	CATG	5 cut(s)	12, 239, 262, 375, 406
CviQI	GTAC	2 cut(s)	494, 563
DdeI	CTNAG	1 cut(s)	893
DpnI	GATC	2 cut(s)	90, 192
DpnII	GATC	2 cut(s)	88, 190
DraIII	CACNNNGTG	1 cut(s)	749
Eam1104I	CTCTTC	1 cut(s)	815
EarI	CTCTTC	1 cut(s)	815
EciI	GGCGGA	1 cut(s)	494
Eco130I	CCWWGG	1 cut(s)	11
Eco31I	GGTCTC	1 cut(s)	468
Eco47I	GGWCC	2 cut(s)	8, 449
Eco57I	CTGAAG	3 cut(s)	405, 828, 903
EcoRI	GAATTC	1 cut(s)	698
EcoT14I	CCWWGG	1 cut(s)	11
EcoT22I	ATGCAT	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	5 cut(s)	15, 242, 265, 378, 409
FalI	AAGNNNNNCTT	2 cut(s)	786, 818
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	5 cut(s)	11, 238, 261, 374, 405
FauNDI	CATATG	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	623
Fsp4HI	GCNGC	1 cut(s)	623
FspBI	CTAG	4 cut(s)	188, 660, 758, 927
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	1 cut(s)	623
HaeIII	GGCC	1 cut(s)	832
HapII	CCGG	1 cut(s)	746
HhaI	GCGC	1 cut(s)	397
Hin1II	CATG	5 cut(s)	15, 242, 265, 378, 409
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	2 cut(s)	380, 697
Hpy166II	GTNNAC	3 cut(s)	8, 307, 571
Hpy188I	TCNGA	2 cut(s)	108, 640
Hpy188III	TCNNGA	4 cut(s)	188, 215, 806, 892
Hpy8I	GTNNAC	3 cut(s)	8, 307, 571
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	5 cut(s)	426, 468, 613, 676, 803
HpyCH4IV	ACGT	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 167, 345, 380
HpyF3I	CTNAG	1 cut(s)	893
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	5 cut(s)	15, 242, 265, 378, 409
HspAI	GCGC	1 cut(s)	395
KpnI	GGTACC	1 cut(s)	566
Kzo9I	GATC	2 cut(s)	88, 190
LmnI	GCTCC	2 cut(s)	676, 839
Lsp1109I	GCAGC	1 cut(s)	609
LweI	GCATC	4 cut(s)	196, 361, 681, 768
MaeI	CTAG	4 cut(s)	188, 660, 758, 927
MaeII	ACGT	1 cut(s)	156
MalI	GATC	2 cut(s)	90, 192
MboI	GATC	2 cut(s)	88, 190
MboII	GAAGA	9 cut(s)	173, 250, 304, 398, 700, 829, 832, 896, 965
MfeI	CAATTG	1 cut(s)	22
MflI	RGATCY	1 cut(s)	88
MluCI	AATT	7 cut(s)	16, 22, 176, 243, 434, 626, 698
Mph1103I	ATGCAT	1 cut(s)	376
MroXI	GAANNNNTTC	1 cut(s)	254
MseI	TTAA	1 cut(s)	714
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	1 cut(s)	747
MunI	CAATTG	1 cut(s)	22
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	4 cut(s)	158, 167, 345, 380
NciI	CCSGG	1 cut(s)	747
NcoI	CCATGG	1 cut(s)	11
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	2 cut(s)	88, 190
NlaIII	CATG	5 cut(s)	15, 242, 265, 378, 409
NlaIV	GGNNCC	4 cut(s)	63, 564, 841, 876
NsiI	ATGCAT	1 cut(s)	376
NspI	RCATGY	1 cut(s)	378
NspV	TTCGAA	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	624
Psp1406I	AACGTT	1 cut(s)	156
PspN4I	GGNNCC	4 cut(s)	63, 564, 841, 876
PspPI	GGNCC	2 cut(s)	8, 449
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	2 cut(s)	495, 564
RsaNI	GTAC	2 cut(s)	494, 563
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	1 cut(s)	623
Sau3AI	GATC	2 cut(s)	88, 190
Sau96I	GGNCC	2 cut(s)	8, 449
ScrFI	CCNGG	1 cut(s)	747
SfaNI	GCATC	4 cut(s)	196, 361, 681, 768
SfuI	TTCGAA	1 cut(s)	248
SinI	GGWCC	2 cut(s)	8, 449
SmiMI	CAYNNNNRTG	1 cut(s)	366
Sse9I	AATT	7 cut(s)	16, 22, 176, 243, 434, 626, 698
SsiI	CCGC	2 cut(s)	393, 479
SspMI	CTAG	4 cut(s)	188, 660, 758, 927
StyD4I	CCNGG	1 cut(s)	745
StyI	CCWWGG	1 cut(s)	11
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	2 cut(s)	248, 931
TasI	AATT	7 cut(s)	16, 22, 176, 243, 434, 626, 698
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TscAI	CASTG	1 cut(s)	580
TseI	GCWGC	1 cut(s)	622
TspDTI	ATGAA	2 cut(s)	173, 250
TspRI	CASTG	1 cut(s)	580
VpaK11BI	GGWCC	2 cut(s)	8, 449
XapI	RAATTY	3 cut(s)	16, 176, 698
XbaI	TCTAGA	1 cut(s)	187
XceI	RCATGY	1 cut(s)	378
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	4 cut(s)	188, 660, 758, 927
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.