Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000952

Physical Location & Seq

Genomic Coordinates Forward (+)

60785280 .. 60786788

Gene Structure 1509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGAGACAAGAAGGTTTGGAAATAAAAAACAAAGAGGGTTCCGATGCTCTTCACCGAGCAGCATTGAAGGGATATGTAGATATTGTGAAAGAGTTGGTGCCAGTAATGAGAAAAGAAGGTTTAGAAATAAAAGACACTGATGGAGACACAGCTCTTAACATTGCAATCTTACAAGGGCATGTGGATATTGCAAAGGAGTTGGTGCAATCGATGAGACAAGAAGGTTTGGAAATAAAAAACAAAGAGGGTTCTGATGCTCTTCACCGAGCAGCATTGAAGGGATATGTAGATATTGTGAAAGAGTTGGTGCCAGTAATGAGAAAAGAAGGTTTAGAAATAAAAGACGCTGATGGAGACACAGCTCTTAACATTGCAATCTTACAAGGGCATGTGGATATTGCAAAGGAGTTGGTGCAATCGATGAGACAAGAAGGTTTGGAAATAAAAAACAAAAACGGTTCCAATGCTCTTCACCAAGCGGTCAACAATGGGCATATGCATTTTGCTAAAGAGTTGATGGCATTGATGAGACCAGAGGCTTTGGAAGAAAAAGACGGTGAAGGTTATACAGCTTTAAGTATTGCTATTTTATGTTTCAAGGATGGAGACGTTTGCGAAATGGCTAAATACATGGCTGAAAAGAATGTTAAAGTACTTGGCATACCCTCCGCTCCCGATGATGAGATTCCAGTTGTCAGAGCTTGTCGTTCTAGTAAATGGAAGTCGGCTCGCTATATGTATTCTGTCACTCCACTTGAAGTGCTCGAGGGACCCAATGGCAGTGATCTTATTTGCTTTTGTCTCAATTCTAGCAAAACGATTGTATTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04024 ko04062 ko04064 ko04210 ko04380 ko04620 ko04621 ko04622 ko04623 ko04624 ko04657 ko04658 ko04659 ko04660 ko04662 ko04668 ko04722 ko04920 ko04926 ko04931 ko05120 ko05131 ko05134 ko05140 ko05142 ko05145 ko05160 ko05161 ko05162 ko05164 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05215 ko05220 ko05222 map04024 map04062 map04064 map04210 map04380 map04620 map04621 map04622 map04623 map04624 map04657 map04658 map04659 map04660 map04662 map04668 map04722 map04920 map04926 map04931 map05120 map05131 map05134 map05140 map05142 map05145 map05160 map05161 map05162 map05164 map05166 map05167 map05168 map05169 map05200 map05203 map05215 map05220 map05222

Pfam Domains

Protein Families

Ank_2

Protein Analysis

277

Amino Acids

30.49

Weight (kDa)

5.5

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	7 - 70	1.4e-10	Ankyrin repeats (3 copies)
Ank_5	PF13857	7 - 55	5.1e-07	Ankyrin repeats (many copies)
Ank_2	PF12796	67 - 140	3e-11	Ankyrin repeats (3 copies)
Ank_5	PF13857	77 - 125	3.8e-07	Ankyrin repeats (many copies)
Ank_2	PF12796	138 - 216	2e-07	Ankyrin repeats (3 copies)
Ank_5	PF13857	147 - 195	7.5e-06	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36310 FvH4_5g36321 FvH4_5g36321 FvH4_5g36321 FvH4_5g36330 FvH4_5g36641 FvH4_5g36641 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090 FvH4_5g37090
rosa_chinensis	RchiOBHm_Chr7g0242961 RchiOBHm_Chr7g0242971 RchiOBHm_Chr7g0243041 RchiOBHm_Chr7g0243171
rosa_laevigata	RLG00000000855 RLG00000000860 RLG00000000865 RLG00000018514
rosa_multiflora	Rmu_sc0004165.1_g000086 Rmu_sc0006141.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032610 Rroxscaffold_2G00111620 Rroxscaffold_3G00222210 Rroxscaffold_3G00222250 Rroxscaffold_4G00316280 Rroxscaffold_4G00323300 Rroxscaffold_4G00325490 Rroxscaffold_6G00396710 Rroxscaffold_6G00411010 Rroxscaffold_7G00195780 Rroxscaffold_7G00199210 Rroxscaffold_7G00199220
rosa_rugosa	Rorug05G0523200 Rorug07G0313100 Rorug07G0317800 Rorug07G0318200 Rorug07G0318400 Rorug07G0318500 Rorug07G0318600
rosa_samantha	Rh1AG201600 Rh1CG186500 Rh7AG473500 Rh7AG473800 Rh7AG474100 Rh7AG474300 Rh7BG443400 Rh7BG443700 Rh7BG444000 Rh7BG444100 Rh7BG444600 Rh7CG490600 Rh7CG490900 Rh7DG458800 Rh7DG459100
rosa_wichuraiana	Rw0G003450 Rw7G038980 Rw7G039040 Rw7G039070 Rw7G039390 Rw7G039450 Rw7G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	97, 307
AccBSI	CCGCTC	1 cut(s)	671
AciI	CCGC	2 cut(s)	479, 669
AfaI	GTAC	1 cut(s)	654
AgsI	TTSAA	4 cut(s)	67, 277, 598, 758
AluBI	AGCT	4 cut(s)	152, 362, 572, 701
AluI	AGCT	4 cut(s)	152, 362, 572, 701
Alw21I	GWGCWC	1 cut(s)	765
Alw26I	GTCTC	7 cut(s)	138, 208, 348, 418, 523, 600, 806
Ama87I	CYCGRG	1 cut(s)	764
ApeKI	GCWGC	2 cut(s)	59, 269
AspS9I	GGNCC	1 cut(s)	770
AsuHPI	GGTGA	4 cut(s)	44, 254, 464, 569
AvaI	CYCGRG	1 cut(s)	764
AvaII	GGWCC	1 cut(s)	770
BanI	GGYRCC	2 cut(s)	97, 307
Bbv12I	GWGCWC	1 cut(s)	765
BbvI	GCAGC	2 cut(s)	71, 281
BccI	CCATC	4 cut(s)	134, 344, 511, 596
BcoDI	GTCTC	7 cut(s)	138, 208, 348, 418, 523, 600, 806
BfaI	CTAG	2 cut(s)	711, 810
BisI	GCNGC	2 cut(s)	60, 270
BlsI	GCNGC	2 cut(s)	61, 271
BmcAI	AGTACT	1 cut(s)	654
Bme18I	GGWCC	1 cut(s)	770
BmeT110I	CYCGRG	1 cut(s)	764
BmgT120I	GGNCC	1 cut(s)	770
BmiI	GGNNCC	6 cut(s)	40, 99, 309, 460, 771, 772
BmsI	GCATC	2 cut(s)	34, 244
Bsa29I	ATCGAT	2 cut(s)	209, 419
BsaI	GGTCTC	1 cut(s)	523
Bse1I	ACTGG	3 cut(s)	101, 311, 689
Bse3DI	GCAATG	2 cut(s)	159, 369
BseCI	ATCGAT	2 cut(s)	209, 419
BseGI	GGATG	1 cut(s)	607
BseMI	GCAATG	2 cut(s)	159, 369
BseNI	ACTGG	3 cut(s)	101, 311, 689
BseXI	GCAGC	2 cut(s)	71, 281
BshNI	GGYRCC	2 cut(s)	97, 307
BshVI	ATCGAT	2 cut(s)	209, 419
BsiHKAI	GWGCWC	1 cut(s)	765
BsiHKCI	CYCGRG	1 cut(s)	764
BslFI	GGGAC	1 cut(s)	783
BsmAI	GTCTC	7 cut(s)	138, 208, 348, 418, 523, 600, 806
BsmBI	CGTCTC	1 cut(s)	600
BsmFI	GGGAC	1 cut(s)	783
Bso31I	GGTCTC	1 cut(s)	523
BsoBI	CYCGRG	1 cut(s)	764
Bsp1286I	GDGCHC	1 cut(s)	765
Bsp143I	GATC	1 cut(s)	784
BspACI	CCGC	2 cut(s)	479, 669
BspDI	ATCGAT	2 cut(s)	209, 419
BspLI	GGNNCC	6 cut(s)	40, 99, 309, 460, 771, 772
BspQI	GCTCTTC	3 cut(s)	54, 264, 474
BspT107I	GGYRCC	2 cut(s)	97, 307
BspTNI	GGTCTC	1 cut(s)	523
BsrBI	CCGCTC	1 cut(s)	671
BsrDI	GCAATG	2 cut(s)	159, 369
BsrI	ACTGG	3 cut(s)	101, 311, 689
BssMI	GATC	1 cut(s)	784
Bst4CI	ACNGT	2 cut(s)	458, 557
Bst6I	CTCTTC	3 cut(s)	54, 264, 474
BstC8I	GCNNGC	1 cut(s)	730
BstF5I	GGATG	1 cut(s)	607
BstKTI	GATC	1 cut(s)	787
BstMAI	GTCTC	7 cut(s)	138, 208, 348, 418, 523, 600, 806
BstMBI	GATC	1 cut(s)	784
BstNSI	RCATGY	2 cut(s)	182, 392
BstV1I	GCAGC	2 cut(s)	71, 281
Bsu15I	ATCGAT	2 cut(s)	209, 419
BsuTUI	ATCGAT	2 cut(s)	209, 419
BtsCI	GGATG	1 cut(s)	607
BtsI	GCAGTG	1 cut(s)	787
BtsIMutI	CAGTG	2 cut(s)	135, 787
Cac8I	GCNNGC	1 cut(s)	730
Cfr13I	GGNCC	1 cut(s)	770
ClaI	ATCGAT	2 cut(s)	209, 419
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	653
CviAII	CATG	3 cut(s)	179, 389, 631
CviJI	RGCY	8 cut(s)	152, 362, 539, 572, 623, 635, 701, 728
CviKI_1	RGCY	8 cut(s)	152, 362, 539, 572, 623, 635, 701, 728
CviQI	GTAC	1 cut(s)	653
DpnI	GATC	1 cut(s)	786
DpnII	GATC	1 cut(s)	784
Eam1104I	CTCTTC	3 cut(s)	54, 264, 474
EarI	CTCTTC	3 cut(s)	54, 264, 474
Eco31I	GGTCTC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	770
Eco88I	CYCGRG	1 cut(s)	764
EcoO109I	RGGNCCY	1 cut(s)	770
EcoT22I	ATGCAT	1 cut(s)	501
Esp3I	CGTCTC	1 cut(s)	600
FaeI	CATG	3 cut(s)	182, 392, 634
FaqI	GGGAC	1 cut(s)	783
FatI	CATG	3 cut(s)	178, 388, 630
FauNDI	CATATG	1 cut(s)	495
Fnu4HI	GCNGC	2 cut(s)	60, 270
FokI	GGATG	1 cut(s)	614
Fsp4HI	GCNGC	2 cut(s)	60, 270
FspBI	CTAG	2 cut(s)	711, 810
GluI	GCNGC	2 cut(s)	60, 270
HgaI	GACGC	1 cut(s)	353
Hin1II	CATG	3 cut(s)	182, 392, 634
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	1 cut(s)	685
HphI	GGTGA	4 cut(s)	44, 254, 464, 569
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	3 cut(s)	43, 253, 698
Hpy188III	TCNNGA	1 cut(s)	674
Hpy8I	GTNNAC	1 cut(s)	484
HpyAV	CCTTC	8 cut(s)	5, 61, 110, 215, 271, 320, 425, 554
HpyCH4III	ACNGT	2 cut(s)	458, 557
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	7 cut(s)	164, 191, 205, 374, 401, 415, 499
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	3 cut(s)	182, 392, 634
KflI	GGGWCCC	1 cut(s)	770
Kzo9I	GATC	1 cut(s)	784
LguI	GCTCTTC	3 cut(s)	54, 264, 474
LmnI	GCTCC	1 cut(s)	676
LpnPI	CCDG	4 cut(s)	114, 324, 546, 702
Lsp1109I	GCAGC	2 cut(s)	71, 281
LweI	GCATC	2 cut(s)	34, 244
MaeI	CTAG	2 cut(s)	711, 810
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	1 cut(s)	745
MalI	GATC	1 cut(s)	786
MbiI	CCGCTC	1 cut(s)	671
MboI	GATC	1 cut(s)	784
MboII	GAAGA	4 cut(s)	41, 251, 461, 557
MhlI	GDGCHC	1 cut(s)	765
MluCI	AATT	2 cut(s)	805, 829
MnlI	CCTC	5 cut(s)	28, 238, 529, 676, 760
Mph1103I	ATGCAT	1 cut(s)	501
MseI	TTAA	6 cut(s)	156, 366, 575, 648, 827, 832
NdeI	CATATG	1 cut(s)	495
NdeII	GATC	1 cut(s)	784
NlaIII	CATG	3 cut(s)	182, 392, 634
NlaIV	GGNNCC	6 cut(s)	40, 99, 309, 460, 771, 772
NmuCI	GTSAC	1 cut(s)	745
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	2 cut(s)	182, 392
PaeR7I	CTCGAG	1 cut(s)	764
PciSI	GCTCTTC	3 cut(s)	54, 264, 474
PfeI	GAWTC	1 cut(s)	685
PkrI	GCNGC	2 cut(s)	61, 271
PpuMI	RGGWCCY	1 cut(s)	770
Psp5II	RGGWCCY	1 cut(s)	770
PspN4I	GGNNCC	6 cut(s)	40, 99, 309, 460, 771, 772
PspPI	GGNCC	1 cut(s)	770
PspPPI	RGGWCCY	1 cut(s)	770
PspXI	VCTCGAGB	1 cut(s)	764
RsaI	GTAC	1 cut(s)	654
RsaNI	GTAC	1 cut(s)	653
SapI	GCTCTTC	3 cut(s)	54, 264, 474
SaqAI	TTAA	6 cut(s)	156, 366, 575, 648, 827, 832
SatI	GCNGC	2 cut(s)	60, 270
Sau3AI	GATC	1 cut(s)	784
Sau96I	GGNCC	1 cut(s)	770
ScaI	AGTACT	1 cut(s)	654
SduI	GDGCHC	1 cut(s)	765
SfaNI	GCATC	2 cut(s)	34, 244
Sfr274I	CTCGAG	1 cut(s)	764
SinI	GGWCC	1 cut(s)	770
SlaI	CTCGAG	1 cut(s)	764
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
Sse9I	AATT	2 cut(s)	805, 829
SsiI	CCGC	2 cut(s)	479, 669
SspMI	CTAG	2 cut(s)	711, 810
TaaI	ACNGT	2 cut(s)	458, 557
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	3 cut(s)	209, 419, 765
TasI	AATT	2 cut(s)	805, 829
TatI	WGTACW	1 cut(s)	652
TfiI	GAWTC	1 cut(s)	685
Tru1I	TTAA	6 cut(s)	156, 366, 575, 648, 827, 832
Tru9I	TTAA	6 cut(s)	156, 366, 575, 648, 827, 832
TscAI	CASTG	2 cut(s)	142, 787
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	2 cut(s)	59, 269
Tsp45I	GTSAC	1 cut(s)	745
TspRI	CASTG	2 cut(s)	142, 787
VpaK11BI	GGWCC	1 cut(s)	770
XceI	RCATGY	2 cut(s)	182, 392
XhoI	CTCGAG	1 cut(s)	764
XspI	CTAG	2 cut(s)	711, 810
ZrmI	AGTACT	1 cut(s)	654
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.