Synaptonemal complex protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g37881 |
| malus_domestica | MD02G1124000.v1.1 MD15G1238000.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521 |
| rosa_laevigata | RLG00000007907 RLG00000008384 RLG00000009432 |
| rosa_multiflora | Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002 |
| rosa_roxburghii | Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980 |
| rosa_samantha | Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400 |
| rosa_wichuraiana | Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 156 |
| AccIII | TCCGGA | 1 cut(s) | 308 |
| AciI | CCGC | 1 cut(s) | 25 |
| AclWI | GGATC | 1 cut(s) | 285 |
| AcuI | CTGAAG | 1 cut(s) | 167 |
| AgsI | TTSAA | 6 cut(s) | 40, 140, 232, 286, 340, 469 |
| AleI | CACNNNNGTG | 1 cut(s) | 435 |
| AluBI | AGCT | 7 cut(s) | 75, 106, 134, 250, 273, 343, 374 |
| AluI | AGCT | 7 cut(s) | 75, 106, 134, 250, 273, 343, 374 |
| AlwI | GGATC | 1 cut(s) | 285 |
| Aor13HI | TCCGGA | 1 cut(s) | 308 |
| AoxI | GGCC | 1 cut(s) | 303 |
| ApeKI | GCWGC | 1 cut(s) | 151 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 135, 326, 464 |
| AspLEI | GCGC | 1 cut(s) | 156 |
| AspS9I | GGNCC | 2 cut(s) | 314, 427 |
| AsuHPI | GGTGA | 2 cut(s) | 337, 373 |
| AvaII | GGWCC | 2 cut(s) | 314, 427 |
| BbsI | GAAGAC | 1 cut(s) | 329 |
| BbvI | GCAGC | 1 cut(s) | 163 |
| BccI | CCATC | 1 cut(s) | 418 |
| BceAI | ACGGC | 1 cut(s) | 12 |
| BfaI | CTAG | 1 cut(s) | 251 |
| BglII | AGATCT | 1 cut(s) | 388 |
| BisI | GCNGC | 1 cut(s) | 152 |
| BlsI | GCNGC | 1 cut(s) | 153 |
| Bme18I | GGWCC | 2 cut(s) | 314, 427 |
| BmgT120I | GGNCC | 2 cut(s) | 314, 427 |
| BmiI | GGNNCC | 1 cut(s) | 206 |
| BmrI | ACTGGG | 1 cut(s) | 92 |
| BmuI | ACTGGG | 1 cut(s) | 92 |
| BpiI | GAAGAC | 1 cut(s) | 329 |
| BpmI | CTGGAG | 1 cut(s) | 280 |
| Bsa29I | ATCGAT | 1 cut(s) | 422 |
| BsaWI | WCCGGW | 1 cut(s) | 308 |
| Bse1I | ACTGG | 1 cut(s) | 87 |
| BseAI | TCCGGA | 1 cut(s) | 308 |
| BseCI | ATCGAT | 1 cut(s) | 422 |
| BseGI | GGATG | 2 cut(s) | 10, 432 |
| BseNI | ACTGG | 1 cut(s) | 87 |
| BseRI | GAGGAG | 1 cut(s) | 283 |
| BseXI | GCAGC | 1 cut(s) | 163 |
| Bsh1236I | CGCG | 1 cut(s) | 156 |
| BshFI | GGCC | 1 cut(s) | 305 |
| BshVI | ATCGAT | 1 cut(s) | 422 |
| BsiSI | CCGG | 2 cut(s) | 183, 309 |
| BslFI | GGGAC | 1 cut(s) | 274 |
| BsmFI | GGGAC | 1 cut(s) | 274 |
| BsmI | GAATGC | 1 cut(s) | 246 |
| BsnI | GGCC | 1 cut(s) | 305 |
| Bsp13I | TCCGGA | 1 cut(s) | 308 |
| Bsp143I | GATC | 3 cut(s) | 277, 299, 388 |
| BspACI | CCGC | 1 cut(s) | 25 |
| BspANI | GGCC | 1 cut(s) | 305 |
| BspDI | ATCGAT | 1 cut(s) | 422 |
| BspEI | TCCGGA | 1 cut(s) | 308 |
| BspFNI | CGCG | 1 cut(s) | 156 |
| BspLI | GGNNCC | 1 cut(s) | 206 |
| BspPI | GGATC | 1 cut(s) | 285 |
| BsrI | ACTGG | 1 cut(s) | 87 |
| BssMI | GATC | 3 cut(s) | 277, 299, 388 |
| Bst6I | CTCTTC | 1 cut(s) | 206 |
| BstC8I | GCNNGC | 2 cut(s) | 63, 372 |
| BstDEI | CTNAG | 1 cut(s) | 480 |
| BstF5I | GGATG | 2 cut(s) | 10, 432 |
| BstFNI | CGCG | 1 cut(s) | 156 |
| BstHHI | GCGC | 1 cut(s) | 156 |
| BstKTI | GATC | 3 cut(s) | 280, 302, 391 |
| BstMBI | GATC | 3 cut(s) | 277, 299, 388 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 151, 270 |
| BstUI | CGCG | 1 cut(s) | 156 |
| BstV1I | GCAGC | 1 cut(s) | 163 |
| BstV2I | GAAGAC | 1 cut(s) | 329 |
| BstX2I | RGATCY | 1 cut(s) | 388 |
| BstYI | RGATCY | 1 cut(s) | 388 |
| Bsu15I | ATCGAT | 1 cut(s) | 422 |
| BsuRI | GGCC | 1 cut(s) | 305 |
| BsuTUI | ATCGAT | 1 cut(s) | 422 |
| BtsCI | GGATG | 2 cut(s) | 10, 432 |
| Cac8I | GCNNGC | 2 cut(s) | 63, 372 |
| CfoI | GCGC | 1 cut(s) | 156 |
| Cfr13I | GGNCC | 2 cut(s) | 314, 427 |
| ClaI | ATCGAT | 1 cut(s) | 422 |
| CviAII | CATG | 1 cut(s) | 265 |
| DdeI | CTNAG | 1 cut(s) | 480 |
| DpnI | GATC | 3 cut(s) | 279, 301, 390 |
| DpnII | GATC | 3 cut(s) | 277, 299, 388 |
| Eam1104I | CTCTTC | 1 cut(s) | 206 |
| EarI | CTCTTC | 1 cut(s) | 206 |
| Eco47I | GGWCC | 2 cut(s) | 314, 427 |
| Eco57I | CTGAAG | 1 cut(s) | 167 |
| EcoO109I | RGGNCCY | 1 cut(s) | 314 |
| FaeI | CATG | 1 cut(s) | 268 |
| FaiI | YATR | 7 cut(s) | 17, 57, 80, 175, 193, 201, 266 |
| FaqI | GGGAC | 1 cut(s) | 274 |
| FatI | CATG | 1 cut(s) | 264 |
| Fnu4HI | GCNGC | 1 cut(s) | 152 |
| FokI | GGATG | 2 cut(s) | 17, 419 |
| Fsp4HI | GCNGC | 1 cut(s) | 152 |
| FspBI | CTAG | 1 cut(s) | 251 |
| GlaI | GCGC | 1 cut(s) | 155 |
| GluI | GCNGC | 1 cut(s) | 152 |
| GsuI | CTGGAG | 1 cut(s) | 280 |
| HaeIII | GGCC | 1 cut(s) | 305 |
| HapII | CCGG | 2 cut(s) | 183, 309 |
| HhaI | GCGC | 1 cut(s) | 156 |
| Hin1II | CATG | 1 cut(s) | 268 |
| Hin6I | GCGC | 1 cut(s) | 154 |
| HinP1I | GCGC | 1 cut(s) | 154 |
| HindIII | AAGCTT | 2 cut(s) | 132, 372 |
| HinfI | GANTC | 1 cut(s) | 158 |
| HpaII | CCGG | 2 cut(s) | 183, 309 |
| HphI | GGTGA | 2 cut(s) | 337, 373 |
| Hpy188I | TCNGA | 3 cut(s) | 163, 261, 321 |
| Hpy188III | TCNNGA | 3 cut(s) | 297, 309, 392 |
| HpyAV | CCTTC | 1 cut(s) | 337 |
| HpyCH4V | TGCA | 4 cut(s) | 65, 244, 440, 457 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 151, 270 |
| HpyF3I | CTNAG | 1 cut(s) | 480 |
| Hsp92II | CATG | 1 cut(s) | 268 |
| HspAI | GCGC | 1 cut(s) | 154 |
| Kpn2I | TCCGGA | 1 cut(s) | 308 |
| Kzo9I | GATC | 3 cut(s) | 277, 299, 388 |
| LmnI | GCTCC | 1 cut(s) | 270 |
| LpnPI | CCDG | 6 cut(s) | 68, 196, 221, 310, 322, 377 |
| Lsp1109I | GCAGC | 1 cut(s) | 163 |
| MaeI | CTAG | 1 cut(s) | 251 |
| MalI | GATC | 3 cut(s) | 279, 301, 390 |
| MboI | GATC | 3 cut(s) | 277, 299, 388 |
| MboII | GAAGA | 2 cut(s) | 223, 334 |
| MflI | RGATCY | 1 cut(s) | 388 |
| MluCI | AATT | 3 cut(s) | 45, 98, 452 |
| MlyI | GAGTC | 1 cut(s) | 167 |
| MnlI | CCTC | 6 cut(s) | 261, 302, 305, 316, 327, 439 |
| MroI | TCCGGA | 1 cut(s) | 308 |
| MroXI | GAANNNNTTC | 3 cut(s) | 135, 326, 464 |
| MslI | CAYNNNNRTG | 1 cut(s) | 435 |
| MspA1I | CMGCKG | 1 cut(s) | 106 |
| MspI | CCGG | 2 cut(s) | 183, 309 |
| Mva1269I | GAATGC | 1 cut(s) | 246 |
| MvnI | CGCG | 1 cut(s) | 156 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 151, 270 |
| NdeII | GATC | 3 cut(s) | 277, 299, 388 |
| NlaIII | CATG | 1 cut(s) | 268 |
| NlaIV | GGNNCC | 1 cut(s) | 206 |
| OliI | CACNNNNGTG | 1 cut(s) | 435 |
| PctI | GAATGC | 1 cut(s) | 246 |
| PdmI | GAANNNNTTC | 3 cut(s) | 135, 326, 464 |
| PkrI | GCNGC | 1 cut(s) | 153 |
| PleI | GAGTC | 1 cut(s) | 166 |
| PpsI | GAGTC | 1 cut(s) | 166 |
| PpuMI | RGGWCCY | 1 cut(s) | 314 |
| Psp5II | RGGWCCY | 1 cut(s) | 314 |
| PspN4I | GGNNCC | 1 cut(s) | 206 |
| PspPI | GGNCC | 2 cut(s) | 314, 427 |
| PspPPI | RGGWCCY | 1 cut(s) | 314 |
| PsuI | RGATCY | 1 cut(s) | 388 |
| PvuII | CAGCTG | 1 cut(s) | 106 |
| RseI | CAYNNNNRTG | 1 cut(s) | 435 |
| SatI | GCNGC | 1 cut(s) | 152 |
| Sau3AI | GATC | 3 cut(s) | 277, 299, 388 |
| Sau96I | GGNCC | 2 cut(s) | 314, 427 |
| SchI | GAGTC | 1 cut(s) | 167 |
| SetI | ASST | 9 cut(s) | 77, 108, 136, 252, 275, 319, 329, 345, 376 |
| SinI | GGWCC | 2 cut(s) | 314, 427 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 435 |
| Sse9I | AATT | 3 cut(s) | 45, 98, 452 |
| SsiI | CCGC | 1 cut(s) | 25 |
| SspMI | CTAG | 1 cut(s) | 251 |
| TaqI | TCGA | 1 cut(s) | 422 |
| TasI | AATT | 3 cut(s) | 45, 98, 452 |
| TseI | GCWGC | 1 cut(s) | 151 |
| TspDTI | ATGAA | 2 cut(s) | 144, 486 |
| TspGWI | ACGGA | 1 cut(s) | 425 |
| VpaK11BI | GGWCC | 2 cut(s) | 314, 427 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 355 |
| XmnI | GAANNNNTTC | 3 cut(s) | 135, 326, 464 |
| XspI | CTAG | 1 cut(s) | 251 |