Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Forward (+)

35503553 .. 35505607

Gene Structure 2055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG197800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTTGATGCAGTTAAAGATGTAGTCTTGCAACCGAGGCCATTGCTTTCCACAAAGAAGCTGCTTGTTTCCATTGCAGTTGGAGTCAAACTGAAAGATCTCCAGGATTGGGCCGGTCATAACCGATTTATCAGGGTAATGCCCAATACTTCTTCTGCTGTTGGTGTTGCAGCGTCAGAGGAGACCGTGATGAAGGAAAAGATGTGGTATGTGATATCTCAAAATGAGCTATCACTTCTTCCAATATCCTTGGCTTCAAAATTGTTGACTGAGGATTGCATGGCATGTGTTGATCTTCTTGAAGTCATGCTGGTGGAACATTTGCAGAGGAATATTGTGCAGCAATGTGAATATTCAAATGTTAAAGCTACTGAACTGATTCTCCCACAGTTTGAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

133

Amino Acids

14.94

Weight (kDa)

5.35

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	3 cut(s)	258, 302, 357
AjnI	CCWGG	1 cut(s)	102
AloI	GAACNNNNNNTCC	2 cut(s)	366, 398
AluBI	AGCT	3 cut(s)	61, 229, 368
AluI	AGCT	3 cut(s)	61, 229, 368
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	2 cut(s)	38, 111
ApeKI	GCWGC	3 cut(s)	61, 170, 340
Asp700I	GAANNNNTTC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	48, 182, 352
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BciT130I	CCWGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	176
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	3 cut(s)	62, 171, 341
BlsI	GCNGC	3 cut(s)	63, 172, 342
Bme1390I	CCNGG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	35, 249
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse118I	RCCGGY	1 cut(s)	113
Bse3DI	GCAATG	3 cut(s)	41, 72, 350
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	35, 249
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMI	GCAATG	3 cut(s)	41, 72, 350
BseMII	CTCAG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	3 cut(s)	48, 182, 352
BsgI	GTGCAG	1 cut(s)	359
BshFI	GGCC	2 cut(s)	40, 113
BsiSI	CCGG	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	40, 113
Bso31I	GGTCTC	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	97, 292
BspANI	GGCC	2 cut(s)	40, 113
BspCNI	CTCAG	1 cut(s)	262
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	3 cut(s)	41, 72, 350
BsrFI	RCCGGY	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	35, 249
BssMI	GATC	2 cut(s)	97, 292
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	187, 390
BstDEI	CTNAG	1 cut(s)	270
BstKTI	GATC	2 cut(s)	100, 295
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	2 cut(s)	97, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	102
BstV1I	GCAGC	3 cut(s)	48, 182, 352
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	40, 113
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	111
CseI	GACGC	1 cut(s)	162
CviAII	CATG	3 cut(s)	280, 285, 307
CviJI	RGCY	6 cut(s)	40, 61, 113, 229, 254, 368
CviKI_1	RGCY	6 cut(s)	40, 61, 113, 229, 254, 368
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	2 cut(s)	99, 294
DpnII	GATC	2 cut(s)	97, 292
Eco130I	CCWWGG	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	176
Eco32I	GATATC	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	102
EcoRV	GATATC	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	3 cut(s)	283, 288, 310
FaiI	YATR	5 cut(s)	120, 210, 281, 286, 308
FatI	CATG	3 cut(s)	279, 284, 306
Fnu4HI	GCNGC	3 cut(s)	62, 171, 341
Fsp4HI	GCNGC	3 cut(s)	62, 171, 341
GluI	GCNGC	3 cut(s)	62, 171, 341
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	40, 113
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	283, 288, 310
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HinfI	GANTC	2 cut(s)	84, 379
HpaII	CCGG	1 cut(s)	114
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	1 cut(s)	267
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	2 cut(s)	187, 390
HpyCH4V	TGCA	7 cut(s)	11, 31, 77, 170, 279, 325, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	283, 288, 310
Kzo9I	GATC	2 cut(s)	97, 292
LpnPI	CCDG	5 cut(s)	89, 116, 118, 127, 296
Lsp1109I	GCAGC	3 cut(s)	48, 182, 352
MalI	GATC	2 cut(s)	99, 294
MboI	GATC	2 cut(s)	97, 292
MboII	GAAGA	3 cut(s)	144, 230, 287
MflI	RGATCY	1 cut(s)	97
MluCI	AATT	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	4 cut(s)	30, 172, 265, 321
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	2 cut(s)	15, 363
MslI	CAYNNNNRTG	1 cut(s)	311
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	2 cut(s)	97, 292
NlaIII	CATG	3 cut(s)	283, 288, 310
NspI	RCATGY	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	379
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	3 cut(s)	63, 172, 342
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	15, 363
SatI	GCNGC	3 cut(s)	62, 171, 341
Sau3AI	GATC	2 cut(s)	97, 292
Sau96I	GGNCC	1 cut(s)	111
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	3 cut(s)	63, 231, 370
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	1 cut(s)	260
SspI	AATATT	2 cut(s)	334, 353
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	187, 390
TasI	AATT	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	2 cut(s)	15, 363
Tru9I	TTAA	2 cut(s)	15, 363
TseI	GCWGC	3 cut(s)	61, 170, 340
TspDTI	ATGAA	1 cut(s)	206
XceI	RCATGY	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.