Rh4AG163900

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
41469293 .. 41493692
24400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG163900.1

Sequence Viewer

Length: 1287 bp
ATGGTCACCGGGAAATCAAGCGACCCAGAGCGTCTGCAGCAGCTGAAGGCCTTCGACAACTCCAAAGCTGGTGTCAAAGGGATTGTAGATGCCGGAATCACCAAACTCCCACCAATTTTCGTCCGTCCAAAGAAAGATCCCTCCGTCGTTGGATACCGTACGGTTTCAGGTCATTTCACTATCCCAATGGTGGATCTGGCTGAATATAACGGAAGGCGTGCTGAGGTGATCGACCAAGTCCGGATGGCCTCAGAGAGCTATGGGTTCTTCCAGGTGGTGAACCATGGGATTCCCAAGAGAGTGATGGAGGAGATGATGGAGGCGGCCCGTGTGTTTCACGAGCTGCCAAGGGAGGAGAAGGCGGAGTACTATAGTAGGGAGATGGGGATGAAGGTCAAGTACTATGCTAGCAGTACCATGTATGATTTGATGTTTGCTGATTGGAAGGACACTTTGCAGTGTATCGTAGGTGATGAGCAGTTTGATCCTCAAGAAATTCCTCTCGTTTGCAGAGATATAACTATGGAGTACTCTAAGCACGTTCACAAATTAGGTGTCACTTTGTTTGAATTTATATCTGAGGCGCTTGGGCTCAAACCTAATCACCTCAAAAACTTGGATATCACAAAGGGGCATATGATTCTTAGTCATTACTATCCACCATGCCCTGAGCCTGAAGTGGCTATTGGCACTGTCGAACACTCAGATCCTGATTTTATGACCATCCTACTTCAAGATCAAATTGGTGGACTTCAAGTTTTGTACCAAAATCAGTGGATTGATGTTCTTCCTGTACCTAGAGCTCTAGTGGTGAATATCGGAGATTTCTTACAGCTAATCTCAAACAATAAGTTTATAAGCGTCAATCACAGAGTATTGGCTAAAAATGAAGTGAGAGATAAAGAAGGGATTCCTGCATCGGAAGATGTGGGTGAAGGAGTAATAAGTGAGGAAAAGATAGTGGGGAGGGAGTTGTTGGAGCTTTTGAGAGATGTTAAGGACCATTTCATGAAGGCCTATGATTCTGGTTTGGATGTTTCAAGGATGCTAGAGTCTAACATGGTTCAGATGCTATCTGCATTGGAGGAGATTGAAGGTCCTTCTATCCATATGATCACTGCTAAAAGTACTGCACCAGAGCTGGTTGGTTTGCTGGCAGAGCTGAAGGATGCACTTGAAGAGCTTGAAAACAGGGTTAATCCAATTTTAATCAAGGTTCCTGCTTTGGTTCTTAACTGTGAGCCAAACATTGACTTCAAGAAAGATATTGAAGCAAAGAGGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

428

Amino Acids

48.37

Weight (kDa)

5.2

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 61 - 163 1.5e-20 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 212 - 296 5.1e-27 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 857
AccIII TCCGGA 1 cut(s) 240
AciI CCGC 2 cut(s) 323, 362
AclWI GGATC 4 cut(s) 131, 201, 479, 701
AcsI RAATTY 2 cut(s) 495, 569
AcuI CTGAAG 3 cut(s) 65, 696, 1184
AfaI GTAC 8 cut(s) 160, 368, 401, 415, 530, 764, 795, 1129
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 9 cut(s) 569, 734, 755, 1041, 1094, 1178, 1187, 1258, 1271
AjnI CCWGG 1 cut(s) 270
AjuI GAANNNNNNNTTGG 2 cut(s) 669, 701
Alw21I GWGCWC 1 cut(s) 805
AlwI GGATC 4 cut(s) 131, 201, 479, 701
AlwNI CAGNNNCTG 2 cut(s) 43, 710
Aor13HI TCCGGA 1 cut(s) 240
AoxI GGCC 4 cut(s) 48, 246, 324, 1014
ApeKI GCWGC 3 cut(s) 37, 40, 343
ApoI RAATTY 2 cut(s) 495, 569
ArsI GACNNNNNNTTYG 4 cut(s) 57, 89, 540, 572
Asp700I GAANNNNTTC 2 cut(s) 50, 909
AspLEI GCGC 1 cut(s) 586
AspS9I GGNCC 3 cut(s) 325, 1000, 1097
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 7 cut(s) 91, 238, 289, 482, 596, 823, 944
AsuNHI GCTAGC 1 cut(s) 407
AvaII GGWCC 2 cut(s) 1000, 1097
BanII GRGCYC 2 cut(s) 594, 805
BarI GAAGNNNNNNTAC 4 cut(s) 350, 382, 383, 415
BauI CACGAG 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 805
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 3 cut(s) 49, 52, 330
BccI CCATC 5 cut(s) 238, 298, 310, 376, 731
BciT130I CCWGG 1 cut(s) 272
BciVI GTATCC 1 cut(s) 146
BclI TGATCA 1 cut(s) 1113
BcnI CCSGG 1 cut(s) 10
BfaI CTAG 4 cut(s) 408, 798, 806, 1049
BfmI CTRYAG 2 cut(s) 35, 370
BfoI RGCGCY 1 cut(s) 587
BfuI GTATCC 1 cut(s) 146
BisI GCNGC 4 cut(s) 38, 41, 324, 344
BlsI GCNGC 4 cut(s) 39, 42, 325, 345
BmcAI AGTACT 4 cut(s) 368, 401, 530, 1129
Bme1390I CCNGG 2 cut(s) 10, 272
Bme18I GGWCC 2 cut(s) 1000, 1097
BmgT120I GGNCC 3 cut(s) 325, 1000, 1097
BmiI GGNNCC 1 cut(s) 1218
BmrFI CCNGG 2 cut(s) 10, 272
BmsI GCATC 5 cut(s) 79, 926, 1035, 1059, 1159
BmtI GCTAGC 1 cut(s) 411
Bpu10I CCTNAGC 2 cut(s) 222, 669
BpuEI CTTGAG 1 cut(s) 474
BpuMI CCSGG 1 cut(s) 10
BsaJI CCNNGG 2 cut(s) 283, 347
BsaWI WCCGGW 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 190
BseAI TCCGGA 1 cut(s) 240
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 2 cut(s) 283, 347
BseGI GGATG 6 cut(s) 249, 393, 723, 1039, 1050, 1174
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 5 cut(s) 213, 264, 570, 660, 717
BseRI GAGGAG 3 cut(s) 323, 368, 1100
BseXI GCAGC 3 cut(s) 49, 52, 330
BsgI GTGCAG 1 cut(s) 1116
BshFI GGCC 4 cut(s) 50, 248, 326, 1016
BsiHKAI GWGCWC 1 cut(s) 805
BsiSI CCGG 3 cut(s) 9, 93, 241
BsiWI CGTACG 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 190
BsnI GGCC 4 cut(s) 50, 248, 326, 1016
Bsp1286I GDGCHC 2 cut(s) 594, 805
Bsp13I TCCGGA 1 cut(s) 240
Bsp143I GATC 7 cut(s) 136, 193, 228, 484, 706, 736, 1113
Bsp19I CCATGG 1 cut(s) 283
BspACI CCGC 2 cut(s) 323, 362
BspANI GGCC 4 cut(s) 50, 248, 326, 1016
BspCNI CTCAG 5 cut(s) 214, 263, 571, 661, 716
BspEI TCCGGA 1 cut(s) 240
BspHI TCATGA 1 cut(s) 1008
BspLI GGNNCC 1 cut(s) 1218
BspMAI CTGCAG 1 cut(s) 39
BspOI GCTAGC 1 cut(s) 411
BspPI GGATC 4 cut(s) 131, 201, 479, 701
BspQI GCTCTTC 1 cut(s) 1173
BssECI CCNNGG 2 cut(s) 283, 347
BssMI GATC 7 cut(s) 136, 193, 228, 484, 706, 736, 1113
BssSI CACGAG 1 cut(s) 338
BssT1I CCWWGG 2 cut(s) 283, 347
Bst2BI CACGAG 1 cut(s) 338
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 4 cut(s) 158, 163, 694, 1238
Bst6I CTCTTC 1 cut(s) 1173
BstC8I GCNNGC 3 cut(s) 219, 409, 1155
BstDEI CTNAG 7 cut(s) 222, 250, 534, 579, 644, 669, 703
BstDSI CCRYGG 1 cut(s) 283
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 6 cut(s) 249, 393, 723, 1039, 1050, 1174
BstH2I RGCGCY 1 cut(s) 587
BstHHI GCGC 1 cut(s) 586
BstKTI GATC 7 cut(s) 139, 196, 231, 487, 709, 739, 1116
BstMBI GATC 7 cut(s) 136, 193, 228, 484, 706, 736, 1113
BstMWI GCNNNNNNNGC 2 cut(s) 37, 1159
BstNI CCWGG 1 cut(s) 272
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 2 cut(s) 8, 270
BstSFI CTRYAG 2 cut(s) 35, 370
BstV1I GCAGC 3 cut(s) 49, 52, 330
BstX2I RGATCY 3 cut(s) 136, 193, 706
BstYI RGATCY 3 cut(s) 136, 193, 706
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 4 cut(s) 50, 248, 326, 1016
BtgI CCRYGG 1 cut(s) 283
BtsCI GGATG 6 cut(s) 249, 393, 723, 1039, 1050, 1174
BtsI GCAGTG 2 cut(s) 464, 1116
BtsIMutI CAGTG 4 cut(s) 464, 690, 779, 1116
Cac8I GCNNGC 3 cut(s) 219, 409, 1155
CaiI CAGNNNCTG 2 cut(s) 43, 710
CciI TCATGA 1 cut(s) 1008
CfoI GCGC 1 cut(s) 586
Cfr13I GGNCC 3 cut(s) 325, 1000, 1097
CseI GACGC 2 cut(s) 20, 850
Csp6I GTAC 8 cut(s) 159, 367, 400, 414, 529, 763, 794, 1128
CspCI CAANNNNNGTGG 2 cut(s) 755, 790
CviAII CATG 5 cut(s) 284, 418, 663, 1009, 1060
CviQI GTAC 8 cut(s) 159, 367, 400, 414, 529, 763, 794, 1128
DdeI CTNAG 7 cut(s) 222, 250, 534, 579, 644, 669, 703
DpnI GATC 7 cut(s) 138, 195, 230, 486, 708, 738, 1115
DpnII GATC 7 cut(s) 136, 193, 228, 484, 706, 736, 1113
Eam1104I CTCTTC 1 cut(s) 1173
EarI CTCTTC 1 cut(s) 1173
EciI GGCGGA 1 cut(s) 377
Ecl136II GAGCTC 1 cut(s) 803
Eco130I CCWWGG 2 cut(s) 283, 347
Eco147I AGGCCT 2 cut(s) 50, 1016
Eco24I GRGCYC 2 cut(s) 594, 805
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 2 cut(s) 1000, 1097
Eco53kI GAGCTC 1 cut(s) 803
Eco57I CTGAAG 3 cut(s) 65, 696, 1184
Eco91I GGTNACC 1 cut(s) 4
EcoICRI GAGCTC 1 cut(s) 803
EcoO109I RGGNCCY 1 cut(s) 1097
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 270
EcoRV GATATC 1 cut(s) 622
EcoT14I CCWWGG 2 cut(s) 283, 347
EcoT38I GRGCYC 2 cut(s) 594, 805
ErhI CCWWGG 2 cut(s) 283, 347
FaeI CATG 5 cut(s) 287, 421, 666, 1012, 1063
FatI CATG 5 cut(s) 283, 417, 662, 1008, 1059
FauNDI CATATG 2 cut(s) 636, 1110
FbaI TGATCA 1 cut(s) 1113
Fnu4HI GCNGC 4 cut(s) 38, 41, 324, 344
FokI GGATG 6 cut(s) 256, 400, 710, 1046, 1057, 1181
FriOI GRGCYC 2 cut(s) 594, 805
Fsp4HI GCNGC 4 cut(s) 38, 41, 324, 344
FspBI CTAG 4 cut(s) 408, 798, 806, 1049
GlaI GCGC 1 cut(s) 585
GluI GCNGC 4 cut(s) 38, 41, 324, 344
HaeII RGCGCY 1 cut(s) 587
HaeIII GGCC 4 cut(s) 50, 248, 326, 1016
HapII CCGG 3 cut(s) 9, 93, 241
HgaI GACGC 2 cut(s) 20, 850
HhaI GCGC 1 cut(s) 586
Hin1II CATG 5 cut(s) 287, 421, 666, 1012, 1063
Hin6I GCGC 1 cut(s) 584
HinP1I GCGC 1 cut(s) 584
HinfI GANTC 6 cut(s) 96, 289, 640, 910, 1022, 1052
HpaII CCGG 3 cut(s) 9, 93, 241
HphI GGTGA 7 cut(s) 91, 238, 289, 482, 596, 823, 944
Hpy166II GTNNAC 3 cut(s) 280, 544, 749
Hpy188I TCNGA 6 cut(s) 253, 580, 706, 821, 922, 1068
Hpy188III TCNNGA 7 cut(s) 241, 338, 491, 710, 734, 1009, 1258
Hpy8I GTNNAC 3 cut(s) 280, 544, 749
Hpy99I CGWCG 1 cut(s) 149
HpyCH4III ACNGT 4 cut(s) 158, 163, 694, 1238
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 7 cut(s) 37, 457, 510, 917, 1079, 1133, 1172
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 1159
HpyF3I CTNAG 7 cut(s) 222, 250, 534, 579, 644, 669, 703
HpySE526I ACGT 1 cut(s) 540
Hsp92II CATG 5 cut(s) 287, 421, 666, 1012, 1063
HspAI GCGC 1 cut(s) 584
Kpn2I TCCGGA 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 1113
Kzo9I GATC 7 cut(s) 136, 193, 228, 484, 706, 736, 1113
LguI GCTCTTC 1 cut(s) 1173
LmnI GCTCC 1 cut(s) 979
Lsp1109I GCAGC 3 cut(s) 49, 52, 330
LweI GCATC 5 cut(s) 79, 926, 1035, 1059, 1159
MaeI CTAG 4 cut(s) 408, 798, 806, 1049
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 2 cut(s) 4, 556
MalI GATC 7 cut(s) 138, 195, 230, 486, 708, 738, 1115
MboI GATC 7 cut(s) 136, 193, 228, 484, 706, 736, 1113
MboII GAAGA 4 cut(s) 259, 779, 935, 1190
MflI RGATCY 3 cut(s) 136, 193, 706
MhlI GDGCHC 2 cut(s) 594, 805
MluCI AATT 6 cut(s) 114, 495, 548, 569, 741, 1203
MlyI GAGTC 1 cut(s) 1061
MmeI TCCRAC 2 cut(s) 130, 957
MroI TCCGGA 1 cut(s) 240
MroXI GAANNNNTTC 2 cut(s) 50, 909
MseI TTAA 4 cut(s) 996, 1197, 1208, 1233
MspA1I CMGCKG 1 cut(s) 43
MspI CCGG 3 cut(s) 9, 93, 241
MspR9I CCNGG 2 cut(s) 10, 272
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 2 cut(s) 37, 1159
NciI CCSGG 1 cut(s) 10
NcoI CCATGG 1 cut(s) 283
NdeI CATATG 2 cut(s) 636, 1110
NdeII GATC 7 cut(s) 136, 193, 228, 484, 706, 736, 1113
NheI GCTAGC 1 cut(s) 407
NlaIII CATG 5 cut(s) 287, 421, 666, 1012, 1063
NlaIV GGNNCC 1 cut(s) 1218
NmuCI GTSAC 2 cut(s) 4, 556
PagI TCATGA 1 cut(s) 1008
PceI AGGCCT 2 cut(s) 50, 1016
PciSI GCTCTTC 1 cut(s) 1173
PdmI GAANNNNTTC 2 cut(s) 50, 909
PfeI GAWTC 5 cut(s) 96, 289, 640, 910, 1022
Pfl23II CGTACG 1 cut(s) 158
PflFI GACNNNGTC 1 cut(s) 236
PkrI GCNGC 4 cut(s) 39, 42, 325, 345
PleI GAGTC 1 cut(s) 1060
PpsI GAGTC 1 cut(s) 1060
PpuMI RGGWCCY 1 cut(s) 1097
PsiI TTATAA 1 cut(s) 857
Psp124BI GAGCTC 1 cut(s) 805
Psp5II RGGWCCY 1 cut(s) 1097
Psp6I CCWGG 1 cut(s) 270
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 270
PspLI CGTACG 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 1218
PspPI GGNCC 3 cut(s) 325, 1000, 1097
PspPPI RGGWCCY 1 cut(s) 1097
PstI CTGCAG 1 cut(s) 39
PstNI CAGNNNCTG 2 cut(s) 43, 710
PsuI RGATCY 3 cut(s) 136, 193, 706
PsyI GACNNNGTC 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 43
RsaI GTAC 8 cut(s) 160, 368, 401, 415, 530, 764, 795, 1129
RsaNI GTAC 8 cut(s) 159, 367, 400, 414, 529, 763, 794, 1128
SacI GAGCTC 1 cut(s) 805
SapI GCTCTTC 1 cut(s) 1173
SaqAI TTAA 4 cut(s) 996, 1197, 1208, 1233
SatI GCNGC 4 cut(s) 38, 41, 324, 344
Sau3AI GATC 7 cut(s) 136, 193, 228, 484, 706, 736, 1113
Sau96I GGNCC 3 cut(s) 325, 1000, 1097
ScaI AGTACT 4 cut(s) 368, 401, 530, 1129
SchI GAGTC 1 cut(s) 1061
ScrFI CCNGG 2 cut(s) 10, 272
SduI GDGCHC 2 cut(s) 594, 805
SfaNI GCATC 5 cut(s) 79, 926, 1035, 1059, 1159
SfcI CTRYAG 2 cut(s) 35, 370
SinI GGWCC 2 cut(s) 1000, 1097
SmlI CTYRAG 1 cut(s) 489
SmoI CTYRAG 1 cut(s) 489
Sse9I AATT 6 cut(s) 114, 495, 548, 569, 741, 1203
SseBI AGGCCT 2 cut(s) 50, 1016
SsiI CCGC 2 cut(s) 323, 362
SspMI CTAG 4 cut(s) 408, 798, 806, 1049
SstI GAGCTC 1 cut(s) 805
StuI AGGCCT 2 cut(s) 50, 1016
StyD4I CCNGG 2 cut(s) 8, 270
StyI CCWWGG 2 cut(s) 283, 347
TaaI ACNGT 4 cut(s) 158, 163, 694, 1238
TaiI ACGT 1 cut(s) 543
TaqI TCGA 3 cut(s) 54, 231, 696
TasI AATT 6 cut(s) 114, 495, 548, 569, 741, 1203
TatI WGTACW 4 cut(s) 366, 399, 528, 1127
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 5 cut(s) 96, 289, 640, 910, 1022
Tru1I TTAA 4 cut(s) 996, 1197, 1208, 1233
Tru9I TTAA 4 cut(s) 996, 1197, 1208, 1233
TscAI CASTG 4 cut(s) 464, 697, 779, 1123
TseFI GTSAC 2 cut(s) 4, 556
TseI GCWGC 3 cut(s) 37, 40, 343
Tsp45I GTSAC 2 cut(s) 4, 556
TspDTI ATGAA 4 cut(s) 404, 903, 997, 1025
TspGWI ACGGA 3 cut(s) 113, 133, 225
TspRI CASTG 4 cut(s) 464, 697, 779, 1123
Tth111I GACNNNGTC 1 cut(s) 236
VpaK11BI GGWCC 2 cut(s) 1000, 1097
XapI RAATTY 2 cut(s) 495, 569
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
XmnI GAANNNNTTC 2 cut(s) 50, 909
XspI CTAG 4 cut(s) 408, 798, 806, 1049
ZrmI AGTACT 4 cut(s) 368, 401, 530, 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.