Synaptonemal complex protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g37881 |
| malus_domestica | MD02G1124000.v1.1 MD15G1238000.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521 |
| rosa_laevigata | RLG00000007907 RLG00000008384 RLG00000009432 |
| rosa_multiflora | Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002 |
| rosa_roxburghii | Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980 |
| rosa_samantha | Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400 |
| rosa_wichuraiana | Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 103 |
| AciI | CCGC | 3 cut(s) | 107, 153, 206 |
| AclWI | GGATC | 1 cut(s) | 45 |
| AfaI | GTAC | 1 cut(s) | 210 |
| AgsI | TTSAA | 2 cut(s) | 46, 145 |
| AluBI | AGCT | 5 cut(s) | 10, 33, 132, 148, 179 |
| AluI | AGCT | 5 cut(s) | 10, 33, 132, 148, 179 |
| Alw26I | GTCTC | 1 cut(s) | 58 |
| AlwI | GGATC | 1 cut(s) | 45 |
| AoxI | GGCC | 1 cut(s) | 117 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 86 |
| AspS9I | GGNCC | 1 cut(s) | 74 |
| AsuHPI | GGTGA | 1 cut(s) | 142 |
| AvaII | GGWCC | 1 cut(s) | 74 |
| BbsI | GAAGAC | 1 cut(s) | 89 |
| BcoDI | GTCTC | 1 cut(s) | 58 |
| BfaI | CTAG | 1 cut(s) | 11 |
| BglII | AGATCT | 1 cut(s) | 193 |
| Bme18I | GGWCC | 1 cut(s) | 74 |
| BmgT120I | GGNCC | 1 cut(s) | 74 |
| BpiI | GAAGAC | 1 cut(s) | 89 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 104, 136 |
| BseRI | GAGGAG | 1 cut(s) | 43 |
| Bsh1236I | CGCG | 1 cut(s) | 103 |
| BshFI | GGCC | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 110 |
| BsmAI | GTCTC | 1 cut(s) | 58 |
| BsmBI | CGTCTC | 1 cut(s) | 58 |
| BsnI | GGCC | 1 cut(s) | 119 |
| Bsp143I | GATC | 2 cut(s) | 37, 193 |
| BspACI | CCGC | 3 cut(s) | 107, 153, 206 |
| BspANI | GGCC | 1 cut(s) | 119 |
| BspFNI | CGCG | 1 cut(s) | 103 |
| BspPI | GGATC | 1 cut(s) | 45 |
| BssMI | GATC | 2 cut(s) | 37, 193 |
| Bst6I | CTCTTC | 1 cut(s) | 103 |
| BstC8I | GCNNGC | 1 cut(s) | 177 |
| BstDEI | CTNAG | 1 cut(s) | 67 |
| BstFNI | CGCG | 1 cut(s) | 103 |
| BstKTI | GATC | 2 cut(s) | 40, 196 |
| BstMAI | GTCTC | 1 cut(s) | 58 |
| BstMBI | GATC | 2 cut(s) | 37, 193 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 30 |
| BstUI | CGCG | 1 cut(s) | 103 |
| BstV2I | GAAGAC | 1 cut(s) | 89 |
| BstX2I | RGATCY | 1 cut(s) | 193 |
| BstYI | RGATCY | 1 cut(s) | 193 |
| BsuRI | GGCC | 1 cut(s) | 119 |
| Cac8I | GCNNGC | 1 cut(s) | 177 |
| Cfr13I | GGNCC | 1 cut(s) | 74 |
| CseI | GACGC | 1 cut(s) | 92 |
| Csp6I | GTAC | 1 cut(s) | 209 |
| CviAII | CATG | 1 cut(s) | 25 |
| CviJI | RGCY | 6 cut(s) | 10, 33, 119, 132, 148, 179 |
| CviKI_1 | RGCY | 6 cut(s) | 10, 33, 119, 132, 148, 179 |
| CviQI | GTAC | 1 cut(s) | 209 |
| DdeI | CTNAG | 1 cut(s) | 67 |
| DpnI | GATC | 2 cut(s) | 39, 195 |
| DpnII | GATC | 2 cut(s) | 37, 193 |
| Eam1104I | CTCTTC | 1 cut(s) | 103 |
| EarI | CTCTTC | 1 cut(s) | 103 |
| EciI | GGCGGA | 1 cut(s) | 96 |
| Eco47I | GGWCC | 1 cut(s) | 74 |
| EcoO109I | RGGNCCY | 1 cut(s) | 74 |
| Esp3I | CGTCTC | 1 cut(s) | 58 |
| FaeI | CATG | 1 cut(s) | 28 |
| FaiI | YATR | 1 cut(s) | 26 |
| FatI | CATG | 1 cut(s) | 24 |
| FspBI | CTAG | 1 cut(s) | 11 |
| HaeIII | GGCC | 1 cut(s) | 119 |
| HapII | CCGG | 1 cut(s) | 110 |
| HgaI | GACGC | 1 cut(s) | 92 |
| Hin1II | CATG | 1 cut(s) | 28 |
| HindIII | AAGCTT | 2 cut(s) | 130, 177 |
| HinfI | GANTC | 1 cut(s) | 113 |
| HpaII | CCGG | 1 cut(s) | 110 |
| HphI | GGTGA | 1 cut(s) | 142 |
| Hpy188I | TCNGA | 2 cut(s) | 21, 81 |
| Hpy188III | TCNNGA | 3 cut(s) | 55, 126, 197 |
| Hpy99I | CGWCG | 1 cut(s) | 127 |
| HpyAV | CCTTC | 1 cut(s) | 97 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 30 |
| HpyF3I | CTNAG | 1 cut(s) | 67 |
| Hsp92II | CATG | 1 cut(s) | 28 |
| Kzo9I | GATC | 2 cut(s) | 37, 193 |
| LmnI | GCTCC | 1 cut(s) | 30 |
| LpnPI | CCDG | 2 cut(s) | 123, 182 |
| MaeI | CTAG | 1 cut(s) | 11 |
| MalI | GATC | 2 cut(s) | 39, 195 |
| MboI | GATC | 2 cut(s) | 37, 193 |
| MboII | GAAGA | 2 cut(s) | 90, 94 |
| MflI | RGATCY | 1 cut(s) | 193 |
| MluCI | AATT | 2 cut(s) | 161, 273 |
| MlyI | GAGTC | 1 cut(s) | 122 |
| MnlI | CCTC | 5 cut(s) | 21, 65, 87, 130, 280 |
| MroXI | GAANNNNTTC | 1 cut(s) | 86 |
| MspI | CCGG | 1 cut(s) | 110 |
| MvnI | CGCG | 1 cut(s) | 103 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 30 |
| NdeII | GATC | 2 cut(s) | 37, 193 |
| NlaIII | CATG | 1 cut(s) | 28 |
| PdmI | GAANNNNTTC | 1 cut(s) | 86 |
| PleI | GAGTC | 1 cut(s) | 121 |
| PpsI | GAGTC | 1 cut(s) | 121 |
| PpuMI | RGGWCCY | 1 cut(s) | 74 |
| Psp5II | RGGWCCY | 1 cut(s) | 74 |
| PspPI | GGNCC | 1 cut(s) | 74 |
| PspPPI | RGGWCCY | 1 cut(s) | 74 |
| PsuI | RGATCY | 1 cut(s) | 193 |
| RsaI | GTAC | 1 cut(s) | 210 |
| RsaNI | GTAC | 1 cut(s) | 209 |
| Sau3AI | GATC | 2 cut(s) | 37, 193 |
| Sau96I | GGNCC | 1 cut(s) | 74 |
| SchI | GAGTC | 1 cut(s) | 122 |
| SetI | ASST | 7 cut(s) | 12, 35, 79, 89, 134, 150, 181 |
| SinI | GGWCC | 1 cut(s) | 74 |
| Sse9I | AATT | 2 cut(s) | 161, 273 |
| SsiI | CCGC | 3 cut(s) | 107, 153, 206 |
| SspMI | CTAG | 1 cut(s) | 11 |
| TaqI | TCGA | 1 cut(s) | 56 |
| TaqII | GACCGA | 1 cut(s) | 52 |
| TasI | AATT | 2 cut(s) | 161, 273 |
| TspGWI | ACGGA | 1 cut(s) | 40 |
| VpaK11BI | GGWCC | 1 cut(s) | 74 |
| XmnI | GAANNNNTTC | 1 cut(s) | 86 |
| XspI | CTAG | 1 cut(s) | 11 |