Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Forward (+)

8731800 .. 8735409

Gene Structure 3610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG046400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAGGAGCTTGGATCAGTTCAAGTCCCTATCCAAATCGGTCTCAGAAGGACCTCCGAGGACGTTCGCCTACTCTTCACGTTCGCCGGAGTCGACTTTGTTGGGAAGCTTGGCGAATTTGAAGCTCACCGCAGAGAAATTGGTGAAGGAGCAAGCTTCTGTGAAAACAGATCTGGAAATGGCACTCCGGCTTGGCATCCTTTTCATGAAGAATATTTTGTCAGTGGGAGTTCTGATGGATCCATTTTCCATTAGCTTGTTGGGTGGGGACTCAGGCAGCCGACCTATAGTTTGCCAAATTTATTGTTCATTTCAGGAGAAATTTGGATTTAGTAGTTTGGTTCTGATTGGAAGGCAACTGTATTCCAATCTGATGCACAGGCATGAGACTCCCAGGTTGAAATTGCTAATGCACACGATGACAGTGTGTGGGATCTCCAATGGCACCCTATTGGCTATATTCTTTGCAGAGTACAAGGCTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

17.89

Weight (kDa)

9.4

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	92
AciI	CCGC	1 cut(s)	129
AclWI	GGATC	4 cut(s)	21, 233, 246, 440
AcsI	RAATTY	3 cut(s)	115, 297, 320
AfaI	GTAC	1 cut(s)	473
AgsI	TTSAA	3 cut(s)	22, 121, 400
AjnI	CCWGG	1 cut(s)	392
AluBI	AGCT	5 cut(s)	9, 108, 124, 155, 255
AluI	AGCT	5 cut(s)	9, 108, 124, 155, 255
Alw26I	GTCTC	2 cut(s)	46, 380
AlwI	GGATC	4 cut(s)	21, 233, 246, 440
ApeKI	GCWGC	1 cut(s)	276
ApoI	RAATTY	3 cut(s)	115, 297, 320
ArsI	GACNNNNNNTTYG	2 cut(s)	273, 305
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	118, 154
AvaII	GGWCC	1 cut(s)	50
BamHI	GGATCC	1 cut(s)	238
BanI	GGYRCC	1 cut(s)	443
BbvI	GCAGC	1 cut(s)	288
BccI	CCATC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	394
BcoDI	GTCTC	2 cut(s)	46, 380
BfmI	CTRYAG	1 cut(s)	285
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
Bme1390I	CCNGG	1 cut(s)	394
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	2 cut(s)	240, 445
BmrFI	CCNGG	1 cut(s)	394
BmsI	GCATC	2 cut(s)	204, 363
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	56, 392
BseBI	CCWGG	1 cut(s)	394
BseDI	CCNNGG	2 cut(s)	56, 392
BseGI	GGATG	1 cut(s)	195
BseMII	CTCAG	2 cut(s)	57, 285
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	288
BshNI	GGYRCC	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	86, 187
BslFI	GGGAC	2 cut(s)	10, 281
BsmAI	GTCTC	2 cut(s)	46, 380
BsmFI	GGGAC	2 cut(s)	10, 281
Bso31I	GGTCTC	1 cut(s)	46
Bsp143I	GATC	4 cut(s)	13, 169, 238, 432
BspACI	CCGC	1 cut(s)	129
BspCNI	CTCAG	2 cut(s)	56, 284
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	240, 445
BspPI	GGATC	4 cut(s)	21, 233, 246, 440
BspT107I	GGYRCC	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	56, 392
BssMI	GATC	4 cut(s)	13, 169, 238, 432
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	2 cut(s)	360, 424
Bst6I	CTCTTC	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	43, 271
BstF5I	GGATG	1 cut(s)	195
BstKTI	GATC	4 cut(s)	16, 172, 241, 435
BstMAI	GTCTC	2 cut(s)	46, 380
BstMBI	GATC	4 cut(s)	13, 169, 238, 432
BstNI	CCWGG	1 cut(s)	394
BstSCI	CCNGG	1 cut(s)	392
BstSFI	CTRYAG	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	288
BstX2I	RGATCY	3 cut(s)	169, 238, 432
BstYI	RGATCY	3 cut(s)	169, 238, 432
BtsCI	GGATG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	228, 429
Cac8I	GCNNGC	1 cut(s)	153
CciI	TCATGA	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	2 cut(s)	205, 383
CviJI	RGCY	9 cut(s)	9, 108, 124, 155, 190, 255, 279, 455, 479
CviKI_1	RGCY	9 cut(s)	9, 108, 124, 155, 190, 255, 279, 455, 479
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	2 cut(s)	43, 271
DpnI	GATC	4 cut(s)	15, 171, 240, 434
DpnII	GATC	4 cut(s)	13, 169, 238, 432
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	392
FaeI	CATG	2 cut(s)	208, 386
FaiI	YATR	4 cut(s)	206, 287, 384, 458
FaqI	GGGAC	2 cut(s)	10, 281
FatI	CATG	2 cut(s)	204, 382
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	277
GluI	GCNGC	1 cut(s)	277
HapII	CCGG	2 cut(s)	86, 187
Hin1II	CATG	2 cut(s)	208, 386
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HindIII	AAGCTT	2 cut(s)	106, 153
HinfI	GANTC	3 cut(s)	89, 269, 388
HpaII	CCGG	2 cut(s)	86, 187
HphI	GGTGA	2 cut(s)	118, 154
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	5 cut(s)	46, 57, 234, 345, 372
Hpy188III	TCNNGA	3 cut(s)	173, 205, 314
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	3 cut(s)	41, 139, 345
HpyCH4III	ACNGT	2 cut(s)	360, 424
HpyCH4IV	ACGT	2 cut(s)	62, 79
HpyCH4V	TGCA	3 cut(s)	376, 412, 467
HpyF3I	CTNAG	2 cut(s)	43, 271
HpySE526I	ACGT	2 cut(s)	62, 79
Hsp92II	CATG	2 cut(s)	208, 386
Kzo9I	GATC	4 cut(s)	13, 169, 238, 432
LmnI	GCTCC	2 cut(s)	6, 148
LpnPI	CCDG	8 cut(s)	99, 158, 200, 258, 299, 364, 379, 406
Lsp1109I	GCAGC	1 cut(s)	288
LweI	GCATC	2 cut(s)	204, 363
MaeII	ACGT	2 cut(s)	62, 79
MalI	GATC	4 cut(s)	15, 171, 240, 434
MboI	GATC	4 cut(s)	13, 169, 238, 432
MboII	GAAGA	2 cut(s)	66, 220
MflI	RGATCY	3 cut(s)	169, 238, 432
MluCI	AATT	5 cut(s)	115, 137, 297, 320, 401
MlyI	GAGTC	3 cut(s)	98, 263, 382
MnlI	CCTC	2 cut(s)	51, 63
MslI	CAYNNNNRTG	1 cut(s)	381
MspI	CCGG	2 cut(s)	86, 187
MspR9I	CCNGG	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	394
NdeII	GATC	4 cut(s)	13, 169, 238, 432
NlaIII	CATG	2 cut(s)	208, 386
NlaIV	GGNNCC	2 cut(s)	240, 445
PagI	TCATGA	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	278
PleI	GAGTC	3 cut(s)	97, 263, 382
PpsI	GAGTC	3 cut(s)	97, 263, 382
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	392
PspN4I	GGNNCC	2 cut(s)	240, 445
PspPI	GGNCC	1 cut(s)	50
PspPPI	RGGWCCY	1 cut(s)	50
PsuI	RGATCY	3 cut(s)	169, 238, 432
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
RseI	CAYNNNNRTG	1 cut(s)	381
SalI	GTCGAC	1 cut(s)	91
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	4 cut(s)	13, 169, 238, 432
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	3 cut(s)	98, 263, 382
ScrFI	CCNGG	1 cut(s)	394
SfaNI	GCATC	2 cut(s)	204, 363
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	381
Sse9I	AATT	5 cut(s)	115, 137, 297, 320, 401
SsiI	CCGC	1 cut(s)	129
SspI	AATATT	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	392
TaaI	ACNGT	2 cut(s)	360, 424
TaiI	ACGT	2 cut(s)	65, 82
TaqI	TCGA	1 cut(s)	92
TaqII	GACCGA	1 cut(s)	28
TasI	AATT	5 cut(s)	115, 137, 297, 320, 401
TatI	WGTACW	1 cut(s)	471
TscAI	CASTG	2 cut(s)	228, 429
TseI	GCWGC	1 cut(s)	276
TspDTI	ATGAA	3 cut(s)	193, 221, 297
TspRI	CASTG	2 cut(s)	228, 429
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	3 cut(s)	115, 297, 320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.