Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Reverse (-)

10100775 .. 10103157

Gene Structure 2383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1124000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGGGTGGTAATCCTTCCAAATCCAAGTCCAGGGTGGTGGATGTTAACGATCAGGTACGGCTTTGTAGAGAGAGAAAACGCCAACTAGAGTTAGCCCTAGAGAGAAGGTCTGCGTTCGCAGACGCGCAGTGCAAGTACATCCATTCGCTCTTGTCGGTCGGGCATGCTGTAGGGATGTTAGCAAACGTTCAAACTCAAAACATTGGCTCCACGTTTTCGGACTCCGAAATTTCGACGAGCTCTGTAAAGGTTGACGGAGAAGAGGACGACGCTGGGACGACTGATGGGGAAGTAGTTTGTAGGGTGATGGTGGCTCCTTCGGTGGCATCATCAACACAAAGAGATTCTGAGGGGGGAGAGATGGCGATAAGTAGTGAAAAGGAAGGAGATTCGAGTAATATGAATCAAACGGAAGGAAAAGTGATAGAATTGTTGGAAGCACTAAAAGCTGTTGAGAAGCATTTCTTTCGAGTTTATTATTCTGGTATGGAGGTTTCCAGGATGCTTGAAACCAACATGGTTCAAGTAGAATCTGCTTCCAAGGAGATTAAAGAAAAATCGGAAAAGTTAGTTCGTTCAATGACGGTGAGCCACTCCGCCTCATCTAGATTCTCCTCCAAAATTCTCTTGAGATCTAGCTCTAGAACTTCTTCGACATGCACTTATTTCAATAGTGGCCTTGATGACCATGGAAAGACGTTGCTTGGGGGCCATTCGTCAACACTTACGAGCCTATACGATGCGGAGAAGAAGCTCTATGAGGAGGTGAAGATAGTGGAAAAAACCAAGAAAAGATGCGTCCGACTGCAAAAGCAACGAGGAGAAGGAGATGTACTCAAGAAAAAGGACAGGATTGGAGTTAAAATATCGTACTTGGAAAGCAAAATTTCAAATTCCTATACAGATATCAAATATAACTCCAAGAAAATTCAAAAGCTGAGAGATGAGTTGCAGGCACAAGTTGTTAAGTTGTTTCAAGGCCTAATGAGAAATTGGCAGATGATGTCGGAAGCTCATGAGATGCAAAAGAGAATCATGTCTCATGTGAAATGTCTCAACTCTCCATCTGTTGGAATGTCATGCAATGACTTACACCAACTTGCCACCTCTAAGCTTGAAGATGAACTTCAAAAGTGGTGCTCTTGCTTTGCTTCGTATGTCTCTTCGCAGAAGGCGTACGTTAAAGCTCTTCATGGTGGGATATTCAAGTTTGCTGGCGCTGAAAATGGATCTGGCTCTCCCGACAAGTCTTCGCTATTTAAGACTTGGTTAGATTGCCTGCATAGCCTTCCAGATGAAGCAGTCACTTGTGCCATGAAAGACTTTGGGAAGGATGTCCGAGCACTGGTGGATCGACAAAAAAAGGAGCATCGACTGAAGAAAGAGATTGATGAAGAGTTGAATGACCTGAATAAGCGCGACAGGCCTGAGACTGAGATGACGGAGCAGTTGAGGAAGAAGCTAGATACTAAGAAGGCGAAAACTTGTATTGCTGTGAGTAGATTTCAGACGGGGTTTTCTACAGTTTTCGAATCCTTGGCTGAGTATTCAAACAATGCAATGACAATGTATGATAACCTTATAGCATGCAGTGGAGATGCAAACGAAGCTGACAACGAAAGCATCAACTCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

546

Amino Acids

60.92

Weight (kDa)

8.38

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF630	PF04783	8 - 57	4.6e-14	Protein of unknown function (DUF630)
DUF632	PF04782	144 - 447	5.4e-66	Protein of unknown function (DUF632)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1070
AccII	CGCG	2 cut(s)	125, 1419
AciI	CCGC	2 cut(s)	597, 743
AclI	AACGTT	1 cut(s)	186
AclWI	GGATC	2 cut(s)	1237, 1359
AcsI	RAATTY	5 cut(s)	228, 621, 885, 892, 927
AcuI	CTGAAG	1 cut(s)	1397
AfaI	GTAC	5 cut(s)	57, 137, 834, 872, 1178
AfiI	CCNNNNNNNGG	3 cut(s)	30, 1070, 1345
AjnI	CCWGG	2 cut(s)	29, 497
Alw21I	GWGCWC	3 cut(s)	242, 1142, 1345
Alw26I	GTCTC	4 cut(s)	1044, 1058, 1165, 1424
AlwI	GGATC	2 cut(s)	1237, 1359
AoxI	GGCC	4 cut(s)	676, 709, 979, 1424
ApoI	RAATTY	5 cut(s)	228, 621, 885, 892, 927
Asp700I	GAANNNNTTC	2 cut(s)	461, 649
AspLEI	GCGC	3 cut(s)	127, 1220, 1419
AspS9I	GGNCC	1 cut(s)	709
AsuHPI	GGTGA	3 cut(s)	316, 598, 778
AsuII	TTCGAA	1 cut(s)	1530
BanII	GRGCYC	1 cut(s)	242
BarI	GAAGNNNNNNTAC	2 cut(s)	816, 848
BbsI	GAAGAC	1 cut(s)	1242
Bbv12I	GWGCWC	3 cut(s)	242, 1142, 1345
BccI	CCATC	4 cut(s)	278, 301, 355, 1072
BceAI	ACGGC	1 cut(s)	74
BcgI	CGANNNNNNTGC	2 cut(s)	449, 483
BciT130I	CCWGG	2 cut(s)	31, 499
BcoDI	GTCTC	4 cut(s)	1044, 1058, 1165, 1424
BfaI	CTAG	6 cut(s)	86, 98, 606, 636, 642, 1463
BfmI	CTRYAG	2 cut(s)	168, 1521
BfoI	RGCGCY	1 cut(s)	1221
BglII	AGATCT	1 cut(s)	632
Bme1390I	CCNGG	2 cut(s)	31, 499
BmgT120I	GGNCC	1 cut(s)	709
BmiI	GGNNCC	3 cut(s)	208, 315, 710
BmrFI	CCNGG	2 cut(s)	31, 499
BmsI	GCATC	8 cut(s)	335, 492, 730, 785, 1011, 1378, 1588, 1632
BpiI	GAAGAC	1 cut(s)	1242
BplI	GAGNNNNNCTC	2 cut(s)	819, 851
Bpu14I	TTCGAA	1 cut(s)	1530
BpuEI	CTTGAG	2 cut(s)	649, 821
BsaJI	CCNNGG	4 cut(s)	30, 540, 688, 1536
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 1070, 1345
Bse1I	ACTGG	1 cut(s)	1350
Bse3DI	GCAATG	2 cut(s)	1090, 1566
BseBI	CCWGG	2 cut(s)	31, 499
BseDI	CCNNGG	4 cut(s)	30, 540, 688, 1536
BseGI	GGATG	5 cut(s)	46, 138, 180, 507, 1339
BseLI	CCNNNNNNNGG	3 cut(s)	30, 1070, 1345
BseMI	GCAATG	2 cut(s)	1090, 1566
BseMII	CTCAG	5 cut(s)	339, 929, 1419, 1425, 1533
BseNI	ACTGG	1 cut(s)	1350
BseRI	GAGGAG	3 cut(s)	604, 776, 834
BseYI	CCCAGC	1 cut(s)	272
Bsh1236I	CGCG	2 cut(s)	125, 1419
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	4 cut(s)	678, 711, 981, 1426
BsiEI	CGRYCG	1 cut(s)	159
BsiHKAI	GWGCWC	3 cut(s)	242, 1142, 1345
BsiWI	CGTACG	1 cut(s)	1176
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	3 cut(s)	30, 1070, 1345
BsmAI	GTCTC	4 cut(s)	1044, 1058, 1165, 1424
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	4 cut(s)	678, 711, 981, 1426
Bsp119I	TTCGAA	1 cut(s)	1530
Bsp1286I	GDGCHC	3 cut(s)	242, 1142, 1345
Bsp143I	GATC	4 cut(s)	49, 632, 1229, 1351
Bsp19I	CCATGG	1 cut(s)	688
BspACI	CCGC	2 cut(s)	597, 743
BspANI	GGCC	4 cut(s)	678, 711, 981, 1426
BspCNI	CTCAG	5 cut(s)	340, 930, 1420, 1426, 1534
BspFNI	CGCG	2 cut(s)	125, 1419
BspHI	TCATGA	1 cut(s)	1015
BspLI	GGNNCC	3 cut(s)	208, 315, 710
BspPI	GGATC	2 cut(s)	1237, 1359
BspQI	GCTCTTC	1 cut(s)	1194
BspT104I	TTCGAA	1 cut(s)	1530
BsrDI	GCAATG	2 cut(s)	1090, 1566
BsrI	ACTGG	1 cut(s)	1350
BssECI	CCNNGG	4 cut(s)	30, 540, 688, 1536
BssMI	GATC	4 cut(s)	49, 632, 1229, 1351
BssT1I	CCWWGG	3 cut(s)	540, 688, 1536
Bst2UI	CCWGG	2 cut(s)	31, 499
Bst4CI	ACNGT	2 cut(s)	586, 1525
Bst6I	CTCTTC	4 cut(s)	255, 1168, 1194, 1389
BstBI	TTCGAA	1 cut(s)	1530
BstC8I	GCNNGC	5 cut(s)	165, 954, 1216, 1280, 1588
BstDEI	CTNAG	7 cut(s)	348, 938, 1110, 1428, 1434, 1470, 1542
BstDSI	CCRYGG	1 cut(s)	688
BstF5I	GGATG	5 cut(s)	46, 138, 180, 507, 1339
BstFNI	CGCG	2 cut(s)	125, 1419
BstH2I	RGCGCY	1 cut(s)	1221
BstHHI	GCGC	3 cut(s)	127, 1220, 1419
BstKTI	GATC	4 cut(s)	52, 635, 1232, 1354
BstMAI	GTCTC	4 cut(s)	1044, 1058, 1165, 1424
BstMBI	GATC	4 cut(s)	49, 632, 1229, 1351
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	4 cut(s)	446, 1284, 1423, 1607
BstNI	CCWGG	2 cut(s)	31, 499
BstNSI	RCATGY	3 cut(s)	167, 660, 1590
BstSCI	CCNGG	2 cut(s)	29, 497
BstSFI	CTRYAG	2 cut(s)	168, 1521
BstUI	CGCG	2 cut(s)	125, 1419
BstV2I	GAAGAC	1 cut(s)	1242
BstX2I	RGATCY	2 cut(s)	632, 1229
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	2 cut(s)	632, 1229
BsuRI	GGCC	4 cut(s)	678, 711, 981, 1426
BtgI	CCRYGG	1 cut(s)	688
BtsCI	GGATG	5 cut(s)	46, 138, 180, 507, 1339
BtsI	GCAGTG	2 cut(s)	134, 1597
BtsIMutI	CAGTG	3 cut(s)	134, 1343, 1597
Cac8I	GCNNGC	5 cut(s)	165, 954, 1216, 1280, 1588
CciI	TCATGA	1 cut(s)	1015
CfoI	GCGC	3 cut(s)	127, 1220, 1419
Cfr13I	GGNCC	1 cut(s)	709
CseI	GACGC	3 cut(s)	131, 278, 787
Csp6I	GTAC	5 cut(s)	56, 136, 833, 871, 1177
CviQI	GTAC	5 cut(s)	56, 136, 833, 871, 1177
DdeI	CTNAG	7 cut(s)	348, 938, 1110, 1428, 1434, 1470, 1542
DpnI	GATC	4 cut(s)	51, 634, 1231, 1353
DpnII	GATC	4 cut(s)	49, 632, 1229, 1351
Eam1104I	CTCTTC	4 cut(s)	255, 1168, 1194, 1389
EarI	CTCTTC	4 cut(s)	255, 1168, 1194, 1389
EciI	GGCGGA	1 cut(s)	586
Ecl136II	GAGCTC	1 cut(s)	240
Eco130I	CCWWGG	3 cut(s)	540, 688, 1536
Eco147I	AGGCCT	2 cut(s)	981, 1426
Eco24I	GRGCYC	1 cut(s)	242
Eco32I	GATATC	1 cut(s)	907
Eco53kI	GAGCTC	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	1397
EcoICRI	GAGCTC	1 cut(s)	240
EcoRII	CCWGG	2 cut(s)	29, 497
EcoRV	GATATC	1 cut(s)	907
EcoT14I	CCWWGG	3 cut(s)	540, 688, 1536
EcoT38I	GRGCYC	1 cut(s)	242
ErhI	CCWWGG	3 cut(s)	540, 688, 1536
FalI	AAGNNNNNCTT	4 cut(s)	449, 481, 1110, 1142
FaqI	GGGAC	1 cut(s)	289
FokI	GGATG	5 cut(s)	53, 125, 187, 514, 1346
FriOI	GRGCYC	1 cut(s)	242
FspBI	CTAG	6 cut(s)	86, 98, 606, 636, 642, 1463
GlaI	GCGC	3 cut(s)	126, 1219, 1418
GsaI	CCCAGC	1 cut(s)	276
HaeII	RGCGCY	1 cut(s)	1221
HaeIII	GGCC	4 cut(s)	678, 711, 981, 1426
HgaI	GACGC	3 cut(s)	131, 278, 787
HhaI	GCGC	3 cut(s)	127, 1220, 1419
Hin6I	GCGC	3 cut(s)	125, 1218, 1417
HinP1I	GCGC	3 cut(s)	125, 1218, 1417
HincII	GTYRAC	3 cut(s)	46, 253, 720
HindII	GTYRAC	3 cut(s)	46, 253, 720
HindIII	AAGCTT	1 cut(s)	1112
HinfI	GANTC	8 cut(s)	221, 344, 389, 403, 530, 609, 1032, 1532
HpaI	GTTAAC	1 cut(s)	46
HphI	GGTGA	3 cut(s)	316, 598, 778
Hpy166II	GTNNAC	3 cut(s)	46, 253, 720
Hpy188I	TCNGA	8 cut(s)	220, 226, 349, 562, 803, 1009, 1340, 1509
Hpy188III	TCNNGA	7 cut(s)	606, 628, 642, 838, 1016, 1241, 1292
Hpy8I	GTNNAC	3 cut(s)	46, 253, 720
Hpy99I	CGWCG	2 cut(s)	238, 272
HpyCH4III	ACNGT	2 cut(s)	586, 1525
HpyCH4IV	ACGT	4 cut(s)	186, 212, 698, 1179
HpyF10VI	GCNNNNNNNGC	4 cut(s)	446, 1284, 1423, 1607
HpyF3I	CTNAG	7 cut(s)	348, 938, 1110, 1428, 1434, 1470, 1542
HpySE526I	ACGT	4 cut(s)	186, 212, 698, 1179
HspAI	GCGC	3 cut(s)	125, 1218, 1417
KspAI	GTTAAC	1 cut(s)	46
Kzo9I	GATC	4 cut(s)	49, 632, 1229, 1351
LguI	GCTCTTC	1 cut(s)	1194
LmnI	GCTCC	4 cut(s)	212, 319, 1366, 1444
LweI	GCATC	8 cut(s)	335, 492, 730, 785, 1011, 1378, 1588, 1632
MaeI	CTAG	6 cut(s)	86, 98, 606, 636, 642, 1463
MaeII	ACGT	4 cut(s)	186, 212, 698, 1179
MaeIII	GTNAC	1 cut(s)	1303
MalI	GATC	4 cut(s)	51, 634, 1231, 1353
MboI	GATC	4 cut(s)	49, 632, 1229, 1351
MflI	RGATCY	2 cut(s)	632, 1229
MhlI	GDGCHC	3 cut(s)	242, 1142, 1345
MluCI	AATT	7 cut(s)	228, 428, 621, 885, 892, 927, 991
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	4 cut(s)	414, 826, 987, 1051
MroXI	GAANNNNTTC	2 cut(s)	461, 649
MseI	TTAA	6 cut(s)	45, 549, 861, 966, 1182, 1260
MspR9I	CCNGG	2 cut(s)	31, 499
MvaI	CCWGG	2 cut(s)	31, 499
MvnI	CGCG	2 cut(s)	125, 1419
MwoI	GCNNNNNNNGC	4 cut(s)	446, 1284, 1423, 1607
NcoI	CCATGG	1 cut(s)	688
NdeII	GATC	4 cut(s)	49, 632, 1229, 1351
NlaIV	GGNNCC	3 cut(s)	208, 315, 710
NmuCI	GTSAC	1 cut(s)	1303
NspI	RCATGY	3 cut(s)	167, 660, 1590
NspV	TTCGAA	1 cut(s)	1530
PaeI	GCATGC	2 cut(s)	167, 1590
PagI	TCATGA	1 cut(s)	1015
PceI	AGGCCT	2 cut(s)	981, 1426
PciSI	GCTCTTC	1 cut(s)	1194
PcsI	WCGNNNNNNNCGW	1 cut(s)	1172
PdmI	GAANNNNTTC	2 cut(s)	461, 649
PfeI	GAWTC	7 cut(s)	344, 389, 403, 530, 609, 1032, 1532
Pfl23II	CGTACG	1 cut(s)	1176
PflMI	CCANNNNNTGG	1 cut(s)	1070
PfoI	TCCNGGA	1 cut(s)	497
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
Psp124BI	GAGCTC	1 cut(s)	242
Psp1406I	AACGTT	1 cut(s)	186
Psp6I	CCWGG	2 cut(s)	29, 497
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	2 cut(s)	29, 497
PspLI	CGTACG	1 cut(s)	1176
PspN4I	GGNNCC	3 cut(s)	208, 315, 710
PspPI	GGNCC	1 cut(s)	709
PsuI	RGATCY	2 cut(s)	632, 1229
RsaI	GTAC	5 cut(s)	57, 137, 834, 872, 1178
RsaNI	GTAC	5 cut(s)	56, 136, 833, 871, 1177
SacI	GAGCTC	1 cut(s)	242
SapI	GCTCTTC	1 cut(s)	1194
SaqAI	TTAA	6 cut(s)	45, 549, 861, 966, 1182, 1260
Sau3AI	GATC	4 cut(s)	49, 632, 1229, 1351
Sau96I	GGNCC	1 cut(s)	709
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	31, 499
SduI	GDGCHC	3 cut(s)	242, 1142, 1345
SfaNI	GCATC	8 cut(s)	335, 492, 730, 785, 1011, 1378, 1588, 1632
SfcI	CTRYAG	2 cut(s)	168, 1521
SfuI	TTCGAA	1 cut(s)	1530
SmlI	CTYRAG	2 cut(s)	628, 836
SmoI	CTYRAG	2 cut(s)	628, 836
SphI	GCATGC	2 cut(s)	167, 1590
Sse9I	AATT	7 cut(s)	228, 428, 621, 885, 892, 927, 991
SseBI	AGGCCT	2 cut(s)	981, 1426
SsiI	CCGC	2 cut(s)	597, 743
SspMI	CTAG	6 cut(s)	86, 98, 606, 636, 642, 1463
SstI	GAGCTC	1 cut(s)	242
StuI	AGGCCT	2 cut(s)	981, 1426
StyD4I	CCNGG	2 cut(s)	29, 497
StyI	CCWWGG	3 cut(s)	540, 688, 1536
TaaI	ACNGT	2 cut(s)	586, 1525
TaiI	ACGT	4 cut(s)	189, 215, 701, 1182
TaqI	TCGA	7 cut(s)	233, 392, 469, 653, 1354, 1372, 1530
TaqII	GACCGA	1 cut(s)	145
TasI	AATT	7 cut(s)	228, 428, 621, 885, 892, 927, 991
TatI	WGTACW	2 cut(s)	135, 832
TfiI	GAWTC	7 cut(s)	344, 389, 403, 530, 609, 1032, 1532
Tru1I	TTAA	6 cut(s)	45, 549, 861, 966, 1182, 1260
Tru9I	TTAA	6 cut(s)	45, 549, 861, 966, 1182, 1260
TscAI	CASTG	3 cut(s)	134, 1350, 1597
TseFI	GTSAC	1 cut(s)	1303
Tsp45I	GTSAC	1 cut(s)	1303
TspDTI	ATGAA	6 cut(s)	416, 1137, 1181, 1311, 1331, 1407
TspGWI	ACGGA	3 cut(s)	270, 425, 1457
TspRI	CASTG	3 cut(s)	134, 1350, 1597
Van91I	CCANNNNNTGG	1 cut(s)	1070
XapI	RAATTY	5 cut(s)	228, 621, 885, 892, 927
XbaI	TCTAGA	2 cut(s)	605, 641
XceI	RCATGY	3 cut(s)	167, 660, 1590
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XmnI	GAANNNNTTC	2 cut(s)	461, 649
XspI	CTAG	6 cut(s)	86, 98, 606, 636, 642, 1463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.