Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Reverse (-)

78438086 .. 78454660

Gene Structure 16575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG569300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTCTGGACGGGGAGCAGACATGTTGCGATTCCGGCATCCCTTGCAAATCGGCTCGACGATGAGCTTTTCCAGGTCATTCGCTCGTCTGCTCTTCCCAAATGGCTCTCTTCCATCAGCATCGGCGGAGCGACGAGTTGTGGACGGCGGTGCTACTGCTCAGATCGATGATGCTTGGGTGCCCAATTGCCTGGGTGGCCTGAGTATTTCCAAACGGGCGGACTCCACTTGGGTGCCTAGTTGCTTGGATCTGGGATGCGCGCTGGGTGATCTGTCGTTGGAGGCGGCTGTGATGAGGCTGGTGCGAGGTGGTGGAGCTGGTGGGGCTTGTATTCTATCGAGGCTTGGCCGGCAATTCTTGGTTGATGGTAGTCGGGGTCTGATGGCAGGGGTGGGCACTGACAAAACCTCCTCCTCGCTTATGTCGGGTGTGGTGGTACGCCAGAGGAGGTGTTGCGGTCGTGGTGGAACGATGATAGGGACGAAAGGGCAGAGCAGGAAGAACATCATCGCTGACGACGACAACGTCGACGCTGACATCATCTTCCCTCCAATTCCCCAAAGCACCTCAGCCGCCACGATCGCCCTCCACGAAGATTGCAAAAACCCATCTGCCCCCAAATCATCTCCCTCCCCGACCAAAGTACCCACCTTTATCGACCTCTCCGATGAACCCGACGACGGCGAGATTCGGATCCTCCTATTCAAACCCACCAAAACCCACTTCAAAAAGCGAAGAACAAACCCGTTTAAAACCGGGTCCGTCTGTGATATTTGCGCCAACGACAAGTTTAGGTACCAATCTTTTCCGATCGAGAATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

274

Amino Acids

29.27

Weight (kDa)

9.03

Isoelectric Point (pI)

53.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	524
Acc65I	GGTACC	1 cut(s)	795
AccB1I	GGYRCC	3 cut(s)	178, 232, 795
AccI	GTMKAC	1 cut(s)	528
AccII	CGCG	1 cut(s)	260
AciI	CCGC	6 cut(s)	125, 147, 218, 284, 456, 573
AclWI	GGATC	3 cut(s)	255, 688, 701
AcoI	YGGCCR	1 cut(s)	346
AfaI	GTAC	3 cut(s)	438, 645, 797
AfiI	CCNNNNNNNGG	1 cut(s)	680
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	706, 727
AjnI	CCWGG	2 cut(s)	71, 189
AjuI	GAANNNNNNNTTGG	2 cut(s)	707, 739
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	2 cut(s)	66, 317
AluI	AGCT	2 cut(s)	66, 317
AlwI	GGATC	3 cut(s)	255, 688, 701
AoxI	GGCC	2 cut(s)	196, 346
Asp718I	GGTACC	1 cut(s)	795
AspLEI	GCGC	3 cut(s)	260, 262, 779
AspS9I	GGNCC	1 cut(s)	759
AsuC2I	CCSGG	1 cut(s)	757
AsuHPI	GGTGA	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	759
BaeGI	GKGCMC	2 cut(s)	183, 398
BaeI	ACNNNNGTAYC	2 cut(s)	627, 660
BamHI	GGATCC	1 cut(s)	693
BanI	GGYRCC	3 cut(s)	178, 232, 795
BbvCI	CCTCAGC	1 cut(s)	568
BccI	CCATC	4 cut(s)	121, 359, 376, 616
BceAI	ACGGC	2 cut(s)	160, 697
BciT130I	CCWGG	2 cut(s)	73, 191
BcnI	CCSGG	1 cut(s)	757
BfaI	CTAG	1 cut(s)	237
BglI	GCCNNNNNGGC	1 cut(s)	195
BisI	GCNGC	2 cut(s)	285, 573
BlsI	GCNGC	2 cut(s)	286, 574
Bme1390I	CCNGG	3 cut(s)	73, 191, 757
Bme18I	GGWCC	1 cut(s)	759
BmgT120I	GGNCC	1 cut(s)	759
BmiI	GGNNCC	5 cut(s)	180, 234, 695, 760, 797
BmrFI	CCNGG	3 cut(s)	73, 191, 757
BmsI	GCATC	4 cut(s)	46, 128, 160, 245
Bpu10I	CCTNAGC	1 cut(s)	568
BpuMI	CCSGG	1 cut(s)	757
Bsa29I	ATCGAT	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	692
BsaJI	CCNNGG	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse118I	RCCGGY	1 cut(s)	348
Bse8I	GATNNNNATC	1 cut(s)	692
BseBI	CCWGG	2 cut(s)	73, 191
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	2 cut(s)	37, 260
BseJI	GATNNNNATC	1 cut(s)	692
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMII	CTCAG	3 cut(s)	173, 191, 582
BsePI	GCGCGC	1 cut(s)	258
BseRI	GAGGAG	3 cut(s)	400, 403, 460
BseSI	GKGCMC	2 cut(s)	183, 398
BseYI	CCCAGC	1 cut(s)	262
Bsh1236I	CGCG	1 cut(s)	260
Bsh1285I	CGRYCG	3 cut(s)	460, 582, 813
BshFI	GGCC	2 cut(s)	198, 348
BshNI	GGYRCC	3 cut(s)	178, 232, 795
BshVI	ATCGAT	1 cut(s)	165
BsiEI	CGRYCG	3 cut(s)	460, 582, 813
BsiSI	CCGG	3 cut(s)	34, 349, 756
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	198, 348
Bsp1286I	GDGCHC	2 cut(s)	183, 398
Bsp143I	GATC	6 cut(s)	162, 247, 268, 579, 693, 810
BspACI	CCGC	6 cut(s)	125, 147, 218, 284, 456, 573
BspANI	GGCC	2 cut(s)	198, 348
BspCNI	CTCAG	3 cut(s)	172, 192, 581
BspDI	ATCGAT	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	260
BspLI	GGNNCC	5 cut(s)	180, 234, 695, 760, 797
BspPI	GGATC	3 cut(s)	255, 688, 701
BspQI	GCTCTTC	1 cut(s)	98
BspT107I	GGYRCC	3 cut(s)	178, 232, 795
BsrFI	RCCGGY	1 cut(s)	348
BssAI	RCCGGY	1 cut(s)	348
BssECI	CCNNGG	1 cut(s)	190
BssHII	GCGCGC	1 cut(s)	258
BssMI	GATC	6 cut(s)	162, 247, 268, 579, 693, 810
Bst2UI	CCWGG	2 cut(s)	73, 191
Bst6I	CTCTTC	2 cut(s)	98, 114
BstAPI	GCANNNNNTGC	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	260, 350
BstDEI	CTNAG	3 cut(s)	159, 200, 568
BstF5I	GGATG	2 cut(s)	37, 260
BstFNI	CGCG	1 cut(s)	260
BstHHI	GCGC	3 cut(s)	260, 262, 779
BstKTI	GATC	6 cut(s)	165, 250, 271, 582, 696, 813
BstMBI	GATC	6 cut(s)	162, 247, 268, 579, 693, 810
BstMCI	CGRYCG	3 cut(s)	460, 582, 813
BstMWI	GCNNNNNNNGC	6 cut(s)	34, 43, 195, 323, 349, 581
BstNI	CCWGG	2 cut(s)	73, 191
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	3 cut(s)	71, 189, 755
BstSLI	GKGCMC	2 cut(s)	183, 398
BstUI	CGCG	1 cut(s)	260
BstX2I	RGATCY	2 cut(s)	247, 693
BstXI	CCANNNNNNTGG	1 cut(s)	190
BstYI	RGATCY	2 cut(s)	247, 693
Bsu15I	ATCGAT	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	198, 348
BsuTUI	ATCGAT	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	493
BtsCI	GGATG	2 cut(s)	37, 260
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	260, 350
CfoI	GCGC	3 cut(s)	260, 262, 779
Cfr10I	RCCGGY	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	759
ClaI	ATCGAT	1 cut(s)	165
CseI	GACGC	1 cut(s)	539
Csp6I	GTAC	3 cut(s)	437, 644, 796
CspCI	CAANNNNNGTGG	2 cut(s)	578, 613
CviAII	CATG	1 cut(s)	22
CviQI	GTAC	3 cut(s)	437, 644, 796
DdeI	CTNAG	3 cut(s)	159, 200, 568
DpnI	GATC	6 cut(s)	164, 249, 270, 581, 695, 812
DpnII	GATC	6 cut(s)	162, 247, 268, 579, 693, 810
DraI	TTTAAA	1 cut(s)	751
DrdI	GACNNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	524
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	2 cut(s)	98, 114
EarI	CTCTTC	2 cut(s)	98, 114
EciI	GGCGGA	2 cut(s)	140, 233
Eco47I	GGWCC	1 cut(s)	759
EcoRII	CCWGG	2 cut(s)	71, 189
FaeI	CATG	1 cut(s)	25
FaiI	YATR	2 cut(s)	23, 422
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	1 cut(s)	21
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	2 cut(s)	285, 573
FokI	GGATG	2 cut(s)	24, 267
Fsp4HI	GCNGC	2 cut(s)	285, 573
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	3 cut(s)	259, 261, 778
GluI	GCNGC	2 cut(s)	285, 573
GsaI	CCCAGC	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	198, 348
HapII	CCGG	3 cut(s)	34, 349, 756
HgaI	GACGC	1 cut(s)	539
HhaI	GCGC	3 cut(s)	260, 262, 779
Hin1II	CATG	1 cut(s)	25
Hin6I	GCGC	3 cut(s)	258, 260, 777
HinP1I	GCGC	3 cut(s)	258, 260, 777
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HinfI	GANTC	3 cut(s)	30, 221, 688
HpaII	CCGG	3 cut(s)	34, 349, 756
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	2 cut(s)	142, 529
Hpy188I	TCNGA	5 cut(s)	162, 381, 667, 693, 810
Hpy188III	TCNNGA	2 cut(s)	6, 814
Hpy8I	GTNNAC	2 cut(s)	142, 529
Hpy99I	CGWCG	7 cut(s)	61, 135, 521, 530, 533, 680, 683
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	2 cut(s)	46, 600
HpyF10VI	GCNNNNNNNGC	6 cut(s)	34, 43, 195, 323, 349, 581
HpyF3I	CTNAG	3 cut(s)	159, 200, 568
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	1 cut(s)	25
HspAI	GCGC	3 cut(s)	258, 260, 777
KpnI	GGTACC	1 cut(s)	799
KroI	GCCGGC	1 cut(s)	348
KroNI	GCCGGC	1 cut(s)	350
Kzo9I	GATC	6 cut(s)	162, 247, 268, 579, 693, 810
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	3 cut(s)	14, 127, 314
LweI	GCATC	4 cut(s)	46, 128, 160, 245
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	525
MalI	GATC	6 cut(s)	164, 249, 270, 581, 695, 812
MboI	GATC	6 cut(s)	162, 247, 268, 579, 693, 810
MboII	GAAGA	6 cut(s)	85, 101, 511, 535, 605, 747
MfeI	CAATTG	1 cut(s)	184
MflI	RGATCY	2 cut(s)	247, 693
MhlI	GDGCHC	2 cut(s)	183, 398
MluCI	AATT	3 cut(s)	184, 353, 552
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	258
MroNI	GCCGGC	1 cut(s)	348
MseI	TTAA	1 cut(s)	750
MslI	CAYNNNNRTG	1 cut(s)	230
MspI	CCGG	3 cut(s)	34, 349, 756
MspR9I	CCNGG	3 cut(s)	73, 191, 757
MunI	CAATTG	1 cut(s)	184
MvaI	CCWGG	2 cut(s)	73, 191
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	6 cut(s)	34, 43, 195, 323, 349, 581
NaeI	GCCGGC	1 cut(s)	350
NciI	CCSGG	1 cut(s)	757
NdeII	GATC	6 cut(s)	162, 247, 268, 579, 693, 810
NgoMIV	GCCGGC	1 cut(s)	348
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	5 cut(s)	180, 234, 695, 760, 797
NspI	RCATGY	1 cut(s)	25
OliI	CACNNNNGTG	1 cut(s)	230
PauI	GCGCGC	1 cut(s)	258
PciI	ACATGT	1 cut(s)	21
PciSI	GCTCTTC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	5 cut(s)	516, 522, 525, 588, 663
PdiI	GCCGGC	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	30, 688
PflFI	GACNNNGTC	1 cut(s)	524
PkrI	GCNGC	2 cut(s)	286, 574
Ple19I	CGATCG	2 cut(s)	582, 813
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PscI	ACATGT	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	71, 189
PspFI	CCCAGC	1 cut(s)	262
PspGI	CCWGG	2 cut(s)	71, 189
PspN4I	GGNNCC	5 cut(s)	180, 234, 695, 760, 797
PspPI	GGNCC	1 cut(s)	759
PsuI	RGATCY	2 cut(s)	247, 693
PsyI	GACNNNGTC	1 cut(s)	524
PteI	GCGCGC	1 cut(s)	258
PvuI	CGATCG	2 cut(s)	582, 813
RsaI	GTAC	3 cut(s)	438, 645, 797
RsaNI	GTAC	3 cut(s)	437, 644, 796
RseI	CAYNNNNRTG	1 cut(s)	230
SalI	GTCGAC	1 cut(s)	527
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	2 cut(s)	285, 573
Sau3AI	GATC	6 cut(s)	162, 247, 268, 579, 693, 810
Sau96I	GGNCC	1 cut(s)	759
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	3 cut(s)	73, 191, 757
SduI	GDGCHC	2 cut(s)	183, 398
SfaNI	GCATC	4 cut(s)	46, 128, 160, 245
SgrDI	CGTCGACG	1 cut(s)	527
SinI	GGWCC	1 cut(s)	759
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	3 cut(s)	184, 353, 552
SsiI	CCGC	6 cut(s)	125, 147, 218, 284, 456, 573
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	3 cut(s)	71, 189, 755
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	6 cut(s)	56, 165, 338, 528, 657, 813
TasI	AATT	3 cut(s)	184, 353, 552
TauI	GCSGC	2 cut(s)	287, 575
TfiI	GAWTC	2 cut(s)	30, 688
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	1 cut(s)	403
TspDTI	ATGAA	1 cut(s)	684
TspGWI	ACGGA	1 cut(s)	751
TspRI	CASTG	1 cut(s)	403
Tth111I	GACNNNGTC	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	759
XceI	RCATGY	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	528
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.