Synaptonemal complex protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g37881 |
| malus_domestica | MD02G1124000.v1.1 MD15G1238000.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521 |
| rosa_laevigata | RLG00000007907 RLG00000008384 RLG00000009432 |
| rosa_multiflora | Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002 |
| rosa_roxburghii | Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980 |
| rosa_samantha | Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400 |
| rosa_wichuraiana | Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 92 |
| AciI | CCGC | 2 cut(s) | 83, 129 |
| AclWI | GGATC | 1 cut(s) | 21 |
| AcsI | RAATTY | 1 cut(s) | 115 |
| AfaI | GTAC | 2 cut(s) | 186, 222 |
| AgsI | TTSAA | 2 cut(s) | 22, 121 |
| AjiI | CACGTC | 1 cut(s) | 80 |
| AluBI | AGCT | 4 cut(s) | 9, 108, 124, 155 |
| AluI | AGCT | 4 cut(s) | 9, 108, 124, 155 |
| Alw26I | GTCTC | 1 cut(s) | 46 |
| AlwI | GGATC | 1 cut(s) | 21 |
| ApoI | RAATTY | 1 cut(s) | 115 |
| AspS9I | GGNCC | 1 cut(s) | 50 |
| AsuHPI | GGTGA | 3 cut(s) | 58, 118, 154 |
| AvaII | GGWCC | 1 cut(s) | 50 |
| BcoDI | GTCTC | 1 cut(s) | 46 |
| BglII | AGATCT | 1 cut(s) | 169 |
| BmcAI | AGTACT | 1 cut(s) | 186 |
| Bme18I | GGWCC | 1 cut(s) | 50 |
| BmgBI | CACGTC | 1 cut(s) | 80 |
| BmgT120I | GGNCC | 1 cut(s) | 50 |
| BsaI | GGTCTC | 1 cut(s) | 46 |
| BsaJI | CCNNGG | 1 cut(s) | 56 |
| BseDI | CCNNGG | 1 cut(s) | 56 |
| BseMII | CTCAG | 1 cut(s) | 57 |
| BseRI | GAGGAG | 1 cut(s) | 19 |
| BsiSI | CCGG | 1 cut(s) | 86 |
| BslFI | GGGAC | 1 cut(s) | 10 |
| BsmAI | GTCTC | 1 cut(s) | 46 |
| BsmFI | GGGAC | 1 cut(s) | 10 |
| Bso31I | GGTCTC | 1 cut(s) | 46 |
| Bsp143I | GATC | 2 cut(s) | 13, 169 |
| BspACI | CCGC | 2 cut(s) | 83, 129 |
| BspCNI | CTCAG | 1 cut(s) | 56 |
| BspPI | GGATC | 1 cut(s) | 21 |
| BspTNI | GGTCTC | 1 cut(s) | 46 |
| BssECI | CCNNGG | 1 cut(s) | 56 |
| BssMI | GATC | 2 cut(s) | 13, 169 |
| Bst6I | CTCTTC | 2 cut(s) | 79, 220 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 1 cut(s) | 43 |
| BstKTI | GATC | 2 cut(s) | 16, 172 |
| BstMAI | GTCTC | 1 cut(s) | 46 |
| BstMBI | GATC | 2 cut(s) | 13, 169 |
| BstX2I | RGATCY | 1 cut(s) | 169 |
| BstYI | RGATCY | 1 cut(s) | 169 |
| BtrI | CACGTC | 1 cut(s) | 80 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| Cfr13I | GGNCC | 1 cut(s) | 50 |
| Csp6I | GTAC | 2 cut(s) | 185, 221 |
| CviJI | RGCY | 4 cut(s) | 9, 108, 124, 155 |
| CviKI_1 | RGCY | 4 cut(s) | 9, 108, 124, 155 |
| CviQI | GTAC | 2 cut(s) | 185, 221 |
| DdeI | CTNAG | 1 cut(s) | 43 |
| DpnI | GATC | 2 cut(s) | 15, 171 |
| DpnII | GATC | 2 cut(s) | 13, 169 |
| Eam1104I | CTCTTC | 2 cut(s) | 79, 220 |
| EarI | CTCTTC | 2 cut(s) | 79, 220 |
| EciI | GGCGGA | 1 cut(s) | 72 |
| Eco31I | GGTCTC | 1 cut(s) | 46 |
| Eco47I | GGWCC | 1 cut(s) | 50 |
| EcoO109I | RGGNCCY | 1 cut(s) | 50 |
| FaqI | GGGAC | 1 cut(s) | 10 |
| FblI | GTMKAC | 1 cut(s) | 92 |
| HapII | CCGG | 1 cut(s) | 86 |
| HincII | GTYRAC | 1 cut(s) | 93 |
| HindII | GTYRAC | 1 cut(s) | 93 |
| HindIII | AAGCTT | 2 cut(s) | 106, 153 |
| HinfI | GANTC | 1 cut(s) | 89 |
| HpaII | CCGG | 1 cut(s) | 86 |
| HphI | GGTGA | 3 cut(s) | 58, 118, 154 |
| Hpy166II | GTNNAC | 2 cut(s) | 66, 93 |
| Hpy188I | TCNGA | 2 cut(s) | 46, 57 |
| Hpy188III | TCNNGA | 1 cut(s) | 173 |
| Hpy8I | GTNNAC | 2 cut(s) | 66, 93 |
| HpyAV | CCTTC | 2 cut(s) | 41, 139 |
| HpyCH4IV | ACGT | 2 cut(s) | 62, 79 |
| HpyF3I | CTNAG | 1 cut(s) | 43 |
| HpySE526I | ACGT | 2 cut(s) | 62, 79 |
| Kzo9I | GATC | 2 cut(s) | 13, 169 |
| LmnI | GCTCC | 2 cut(s) | 6, 148 |
| LpnPI | CCDG | 2 cut(s) | 99, 158 |
| MaeII | ACGT | 2 cut(s) | 62, 79 |
| MalI | GATC | 2 cut(s) | 15, 171 |
| MboI | GATC | 2 cut(s) | 13, 169 |
| MboII | GAAGA | 2 cut(s) | 66, 207 |
| MflI | RGATCY | 1 cut(s) | 169 |
| MluCI | AATT | 2 cut(s) | 115, 137 |
| MlyI | GAGTC | 1 cut(s) | 98 |
| MnlI | CCTC | 2 cut(s) | 51, 63 |
| MspI | CCGG | 1 cut(s) | 86 |
| NdeII | GATC | 2 cut(s) | 13, 169 |
| PleI | GAGTC | 1 cut(s) | 97 |
| PpsI | GAGTC | 1 cut(s) | 97 |
| PpuMI | RGGWCCY | 1 cut(s) | 50 |
| Psp5II | RGGWCCY | 1 cut(s) | 50 |
| PspPI | GGNCC | 1 cut(s) | 50 |
| PspPPI | RGGWCCY | 1 cut(s) | 50 |
| PsuI | RGATCY | 1 cut(s) | 169 |
| RsaI | GTAC | 2 cut(s) | 186, 222 |
| RsaNI | GTAC | 2 cut(s) | 185, 221 |
| SalI | GTCGAC | 1 cut(s) | 91 |
| Sau3AI | GATC | 2 cut(s) | 13, 169 |
| Sau96I | GGNCC | 1 cut(s) | 50 |
| ScaI | AGTACT | 1 cut(s) | 186 |
| SchI | GAGTC | 1 cut(s) | 98 |
| SetI | ASST | 8 cut(s) | 11, 55, 65, 71, 82, 110, 126, 157 |
| SgeI | CNNG | 8 cut(s) | 22, 34, 69, 90, 98, 121, 164, 185 |
| SinI | GGWCC | 1 cut(s) | 50 |
| Sse9I | AATT | 2 cut(s) | 115, 137 |
| SsiI | CCGC | 2 cut(s) | 83, 129 |
| TaiI | ACGT | 2 cut(s) | 65, 82 |
| TaqI | TCGA | 1 cut(s) | 92 |
| TaqII | GACCGA | 1 cut(s) | 28 |
| TasI | AATT | 2 cut(s) | 115, 137 |
| TatI | WGTACW | 1 cut(s) | 184 |
| VpaK11BI | GGWCC | 1 cut(s) | 50 |
| XapI | RAATTY | 1 cut(s) | 115 |
| XmiI | GTMKAC | 1 cut(s) | 92 |
| ZrmI | AGTACT | 1 cut(s) | 186 |