Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Reverse (-)

38716260 .. 38719332

Gene Structure 3073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG321900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGAGGCGCTACCCATCCCGACGGAGACCTACAAGCATGGGTTCATCGGAGCAGGTAAACTGGCGGAGAGCATCGCCAGAGGAGTCATCCGATCAGGCATTCTTCGGCCAAAAATCGCATCACTACCTGCCACTCCAGCCCCATTCGACGCCAAGCCTTCGAGTCCTTCGGCGTCCACCTCCTCCCTCGCAACGACGACGTGGTTGAAGAGAGTGATGTCATCATTTTCGCGGTCAAACCTCAAGTTGGTATTCAAAGATGTAGTTTTGCAACTGAGGCCATTGCTTTCCAGAAAGAAGCTGCTTATTTCAATTGCAGCTGGAGTCAAATTGAAAGATCTCCAGGATTGGGCCGGTCACAGCCGATTTATCAGGGTAATGCCTAATACTCCTTCTGCTGTTGGTGTTGCAGCATCAGTTTTGAGCTTGGGAGGAGCTGCAACAGAACAAGATGGAGACTTAATAGCTGAATTATTTGGATCAGTAGGCAAGATTTGGAAAGCCGATGAAAAATTGTTTGATGCAATTACTGGCCTAAGCGGCAGTGGTCCTGCATATATATATTTGGCTATAGAGGCTTTGGCAGATGGAGGAGTTGCTGCAGGTCTACCGCGAGAACTTGCAGTGGGTCTAGCATCTCAAACTGTATTAGGAGCAGCATCTATGGCTACTAGTTCTGGGAAGCATCCAGGTCAGCTAAAAGATGATGTAACATCACCTGGTGGAACCACCATTACTGGCATTCATGAGCTGGAGAAGGGTGGATATCGTGGAATATTGATGAATGCAGTTATTGCTGCTGCCAGGCGCAGCCGAGAACTTTCACAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

277

Amino Acids

28.8

Weight (kDa)

9.78

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P5CR_dimer	PF14748	170 - 274	4.5e-41	Pyrroline-5-carboxylate reductase dimerisation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	44, 136, 593
AccI	GTMKAC	1 cut(s)	607
AccII	CGCG	2 cut(s)	232, 613
AciI	CCGC	4 cut(s)	65, 232, 540, 611
AclWI	GGATC	1 cut(s)	487
AcoI	YGGCCR	1 cut(s)	107
AcyI	GRCGYC	2 cut(s)	150, 173
AdeI	CACNNNGTG	1 cut(s)	722
AfiI	CCNNNNNNNGG	2 cut(s)	247, 349
AgsI	TTSAA	4 cut(s)	208, 256, 312, 334
AhlI	ACTAGT	1 cut(s)	671
AjiI	CACGTC	1 cut(s)	201
AjnI	CCWGG	4 cut(s)	342, 688, 718, 803
AluBI	AGCT	7 cut(s)	301, 320, 426, 437, 467, 697, 751
AluI	AGCT	7 cut(s)	301, 320, 426, 437, 467, 697, 751
Alw26I	GTCTC	2 cut(s)	20, 450
AlwI	GGATC	1 cut(s)	487
AoxI	GGCC	4 cut(s)	107, 278, 351, 532
ApeKI	GCWGC	9 cut(s)	301, 317, 410, 437, 599, 656, 797, 800, 810
AspLEI	GCGC	2 cut(s)	10, 810
AspS9I	GGNCC	2 cut(s)	351, 548
AsuHPI	GGTGA	1 cut(s)	708
AvaII	GGWCC	1 cut(s)	548
BbvI	GCAGC	9 cut(s)	288, 329, 422, 424, 586, 668, 784, 787, 822
BccI	CCATC	3 cut(s)	23, 446, 581
BciT130I	CCWGG	4 cut(s)	344, 690, 720, 805
BcoDI	GTCTC	2 cut(s)	20, 450
BcuI	ACTAGT	1 cut(s)	671
BfaI	CTAG	3 cut(s)	632, 672, 832
BfmI	CTRYAG	2 cut(s)	570, 600
BfoI	RGCGCY	1 cut(s)	11
BfuAI	ACCTGC	3 cut(s)	44, 136, 593
BglI	GCCNNNNNGGC	1 cut(s)	540
BglII	AGATCT	1 cut(s)	337
Bme1390I	CCNGG	4 cut(s)	344, 690, 720, 805
Bme18I	GGWCC	1 cut(s)	548
BmgBI	CACGTC	1 cut(s)	201
BmgT120I	GGNCC	2 cut(s)	351, 548
BmiI	GGNNCC	1 cut(s)	727
BmrFI	CCNGG	4 cut(s)	344, 690, 720, 805
BmsI	GCATC	7 cut(s)	81, 128, 422, 511, 644, 668, 694
BpmI	CTGGAG	4 cut(s)	120, 326, 342, 773
Bpu10I	CCTNAGC	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	227
BsaHI	GRCGYC	2 cut(s)	150, 173
BsaI	GGTCTC	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 349
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	3 cut(s)	66, 535, 742
Bse3DI	GCAATG	1 cut(s)	281
BseBI	CCWGG	4 cut(s)	344, 690, 720, 805
BseGI	GGATG	3 cut(s)	15, 87, 685
BseLI	CCNNNNNNNGG	2 cut(s)	247, 349
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	3 cut(s)	66, 535, 742
BseRI	GAGGAG	4 cut(s)	96, 172, 447, 606
BseXI	GCAGC	9 cut(s)	288, 329, 422, 424, 586, 668, 784, 787, 822
Bsh1236I	CGCG	2 cut(s)	232, 613
BshFI	GGCC	4 cut(s)	109, 280, 353, 534
BsiSI	CCGG	1 cut(s)	354
BslI	CCNNNNNNNGG	2 cut(s)	247, 349
BsmAI	GTCTC	2 cut(s)	20, 450
BsmI	GAATGC	3 cut(s)	99, 741, 790
BsnI	GGCC	4 cut(s)	109, 280, 353, 534
Bso31I	GGTCTC	1 cut(s)	20
Bsp143I	GATC	3 cut(s)	92, 337, 479
BspACI	CCGC	4 cut(s)	65, 232, 540, 611
BspANI	GGCC	4 cut(s)	109, 280, 353, 534
BspCNI	CTCAG	1 cut(s)	267
BspFNI	CGCG	2 cut(s)	232, 613
BspHI	TCATGA	1 cut(s)	745
BspLI	GGNNCC	1 cut(s)	727
BspMAI	CTGCAG	1 cut(s)	604
BspMI	ACCTGC	3 cut(s)	44, 136, 593
BspPI	GGATC	1 cut(s)	487
BspTNI	GGTCTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	3 cut(s)	66, 535, 742
BssAI	RCCGGY	1 cut(s)	353
BssMI	GATC	3 cut(s)	92, 337, 479
BssNI	GRCGYC	2 cut(s)	150, 173
Bst2UI	CCWGG	4 cut(s)	344, 690, 720, 805
Bst4CI	ACNGT	1 cut(s)	646
Bst6I	CTCTTC	1 cut(s)	203
BstACI	GRCGYC	2 cut(s)	150, 173
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstDEI	CTNAG	2 cut(s)	275, 536
BstF5I	GGATG	3 cut(s)	15, 87, 685
BstFNI	CGCG	2 cut(s)	232, 613
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	2 cut(s)	10, 810
BstKTI	GATC	3 cut(s)	95, 340, 482
BstMAI	GTCTC	2 cut(s)	20, 450
BstMBI	GATC	3 cut(s)	92, 337, 479
BstMWI	GCNNNNNNNGC	6 cut(s)	137, 277, 540, 575, 665, 794
BstNI	CCWGG	4 cut(s)	344, 690, 720, 805
BstSCI	CCNGG	4 cut(s)	342, 688, 718, 803
BstSFI	CTRYAG	2 cut(s)	570, 600
BstUI	CGCG	2 cut(s)	232, 613
BstV1I	GCAGC	9 cut(s)	288, 329, 422, 424, 586, 668, 784, 787, 822
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	4 cut(s)	109, 280, 353, 534
BtgZI	GCGATG	1 cut(s)	58
BtrI	CACGTC	1 cut(s)	201
BtsCI	GGATG	3 cut(s)	15, 87, 685
BtsI	GCAGTG	2 cut(s)	550, 630
BtsIMutI	CAGTG	2 cut(s)	550, 630
BveI	ACCTGC	3 cut(s)	44, 136, 593
CciI	TCATGA	1 cut(s)	745
CfoI	GCGC	2 cut(s)	10, 810
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	2 cut(s)	351, 548
CseI	GACGC	2 cut(s)	158, 162
CsiI	ACCWGGT	1 cut(s)	718
CviAII	CATG	2 cut(s)	38, 746
DdeI	CTNAG	2 cut(s)	275, 536
DpnI	GATC	3 cut(s)	94, 339, 481
DpnII	GATC	3 cut(s)	92, 337, 479
DraIII	CACNNNGTG	1 cut(s)	722
EaeI	YGGCCR	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
EciI	GGCGGA	1 cut(s)	80
Eco31I	GGTCTC	1 cut(s)	20
Eco32I	GATATC	1 cut(s)	767
Eco47I	GGWCC	1 cut(s)	548
EcoRII	CCWGG	4 cut(s)	342, 688, 718, 803
EcoRV	GATATC	1 cut(s)	767
FaeI	CATG	2 cut(s)	41, 749
FaiI	YATR	8 cut(s)	39, 556, 558, 560, 562, 572, 665, 747
FatI	CATG	2 cut(s)	37, 745
FblI	GTMKAC	1 cut(s)	607
FokI	GGATG	3 cut(s)	2, 74, 672
FspBI	CTAG	3 cut(s)	632, 672, 832
GlaI	GCGC	2 cut(s)	9, 809
GsuI	CTGGAG	4 cut(s)	120, 326, 342, 773
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	4 cut(s)	109, 280, 353, 534
HapII	CCGG	1 cut(s)	354
HgaI	GACGC	2 cut(s)	158, 162
HhaI	GCGC	2 cut(s)	10, 810
Hin1I	GRCGYC	2 cut(s)	150, 173
Hin1II	CATG	2 cut(s)	41, 749
Hin6I	GCGC	2 cut(s)	8, 808
HinP1I	GCGC	2 cut(s)	8, 808
HinfI	GANTC	3 cut(s)	84, 163, 324
HpaII	CCGG	1 cut(s)	354
HphI	GGTGA	1 cut(s)	708
Hpy166II	GTNNAC	3 cut(s)	59, 177, 608
Hpy188I	TCNGA	2 cut(s)	50, 92
Hpy188III	TCNNGA	3 cut(s)	19, 291, 746
Hpy8I	GTNNAC	3 cut(s)	59, 177, 608
Hpy99I	CGWCG	4 cut(s)	25, 152, 199, 202
HpyAV	CCTTC	4 cut(s)	168, 177, 402, 751
HpyCH4III	ACNGT	1 cut(s)	646
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	9 cut(s)	271, 317, 410, 440, 524, 554, 602, 623, 788
HpyF10VI	GCNNNNNNNGC	6 cut(s)	137, 277, 540, 575, 665, 794
HpyF3I	CTNAG	2 cut(s)	275, 536
HpySE526I	ACGT	1 cut(s)	200
Hsp92I	GRCGYC	2 cut(s)	150, 173
Hsp92II	CATG	2 cut(s)	41, 749
HspAI	GCGC	2 cut(s)	8, 808
Kzo9I	GATC	3 cut(s)	92, 337, 479
LmnI	GCTCC	3 cut(s)	50, 434, 653
Lsp1109I	GCAGC	9 cut(s)	288, 329, 422, 424, 586, 668, 784, 787, 822
LweI	GCATC	7 cut(s)	81, 128, 422, 511, 644, 668, 694
MabI	ACCWGGT	1 cut(s)	718
MaeI	CTAG	3 cut(s)	632, 672, 832
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	2 cut(s)	356, 709
MalI	GATC	3 cut(s)	94, 339, 481
MboI	GATC	3 cut(s)	92, 337, 479
MboII	GAAGA	2 cut(s)	95, 220
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	1 cut(s)	337
MluCI	AATT	5 cut(s)	312, 329, 470, 512, 525
MlyI	GAGTC	3 cut(s)	93, 172, 333
MnlI	CCTC	9 cut(s)	74, 190, 193, 197, 251, 270, 425, 568, 584
MseI	TTAA	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	354
MspR9I	CCNGG	4 cut(s)	344, 690, 720, 805
MunI	CAATTG	1 cut(s)	312
Mva1269I	GAATGC	3 cut(s)	99, 741, 790
MvaI	CCWGG	4 cut(s)	344, 690, 720, 805
MvnI	CGCG	2 cut(s)	232, 613
MwoI	GCNNNNNNNGC	6 cut(s)	137, 277, 540, 575, 665, 794
NdeII	GATC	3 cut(s)	92, 337, 479
NlaIII	CATG	2 cut(s)	41, 749
NlaIV	GGNNCC	1 cut(s)	727
NmuCI	GTSAC	1 cut(s)	356
PagI	TCATGA	1 cut(s)	745
PctI	GAATGC	3 cut(s)	99, 741, 790
PfoI	TCCNGGA	1 cut(s)	342
PleI	GAGTC	3 cut(s)	92, 171, 332
PpsI	GAGTC	3 cut(s)	92, 171, 332
Psp6I	CCWGG	4 cut(s)	342, 688, 718, 803
PspGI	CCWGG	4 cut(s)	342, 688, 718, 803
PspN4I	GGNNCC	1 cut(s)	727
PspPI	GGNCC	2 cut(s)	351, 548
PsrI	GAACNNNNNNTAC	2 cut(s)	718, 750
PstI	CTGCAG	1 cut(s)	604
PsuI	RGATCY	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	461
Sau3AI	GATC	3 cut(s)	92, 337, 479
Sau96I	GGNCC	2 cut(s)	351, 548
SchI	GAGTC	3 cut(s)	93, 172, 333
ScrFI	CCNGG	4 cut(s)	344, 690, 720, 805
SexAI	ACCWGGT	1 cut(s)	718
SfaNI	GCATC	7 cut(s)	81, 128, 422, 511, 644, 668, 694
SfcI	CTRYAG	2 cut(s)	570, 600
SinI	GGWCC	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
SpeI	ACTAGT	1 cut(s)	671
Sse9I	AATT	5 cut(s)	312, 329, 470, 512, 525
SsiI	CCGC	4 cut(s)	65, 232, 540, 611
SspI	AATATT	1 cut(s)	777
SspMI	CTAG	3 cut(s)	632, 672, 832
StyD4I	CCNGG	4 cut(s)	342, 688, 718, 803
TaaI	ACNGT	1 cut(s)	646
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	2 cut(s)	147, 161
TasI	AATT	5 cut(s)	312, 329, 470, 512, 525
TauI	GCSGC	1 cut(s)	543
Tru1I	TTAA	1 cut(s)	461
Tru9I	TTAA	1 cut(s)	461
TscAI	CASTG	2 cut(s)	550, 630
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	9 cut(s)	301, 317, 410, 437, 599, 656, 797, 800, 810
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	4 cut(s)	34, 522, 734, 797
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	2 cut(s)	550, 630
VpaK11BI	GGWCC	1 cut(s)	548
XmiI	GTMKAC	1 cut(s)	607
XspI	CTAG	3 cut(s)	632, 672, 832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.