Rh7CG460700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001608
Physical Location & Seq
Reverse (-)
61135237 .. 61135533
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG460700.1

Sequence Viewer

Length: 297 bp
ATGGATATGATCTGGGAAAAGGTGGTTTTGGATGCGGCGTCGTGTGCGATGGGTGATCTGTCGTTGGAGGTGGCTGTGATGAGGATGAGCAAGGCATGGTTTGCAACTGTTGGTCTTCCTGTTTCCTGGGTTAAAGTTTGGGTTAGGGAGTTGGGACGTGTTGCGACATGGTGTTTTGATTTGATGAAGCAGCGCATTAGAGGGTGGATGGCACTAGGTTGTTGGCGGTGGTTGAGGCGGCCTGGAGCGTTGGTGTATCGTGCTGGGATGAGAGGTTGTTGGGCCGGGTTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.32

Weight (kDa)

9.94

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 35, 226, 238
AcyI GRCGYC 1 cut(s) 38
AflIII ACRYGT 1 cut(s) 157
AjiI CACGTC 1 cut(s) 158
AjnI CCWGG 2 cut(s) 125, 241
AoxI GGCC 2 cut(s) 239, 282
ApeKI GCWGC 1 cut(s) 190
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 282
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 202
BccI CCATC 2 cut(s) 43, 202
BciT130I CCWGG 2 cut(s) 127, 243
BcnI CCSGG 1 cut(s) 286
BfaI CTAG 1 cut(s) 215
BisI GCNGC 3 cut(s) 36, 191, 239
BlsI GCNGC 3 cut(s) 37, 192, 240
Bme1390I CCNGG 3 cut(s) 127, 243, 286
BmgBI CACGTC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 282
BmrFI CCNGG 3 cut(s) 127, 243, 286
BmsI GCATC 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 286
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 126
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
BseBI CCWGG 2 cut(s) 127, 243
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 4 cut(s) 37, 90, 213, 273
BseXI GCAGC 1 cut(s) 202
BseYI CCCAGC 1 cut(s) 263
BshFI GGCC 2 cut(s) 241, 284
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 168
BsnI GGCC 2 cut(s) 241, 284
Bsp143I GATC 2 cut(s) 9, 55
BspACI CCGC 3 cut(s) 35, 226, 238
BspANI GGCC 2 cut(s) 241, 284
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 9, 55
BssNI GRCGYC 1 cut(s) 38
Bst2UI CCWGG 2 cut(s) 127, 243
Bst4CI ACNGT 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 38
BstAPI GCANNNNNTGC 1 cut(s) 101
BstF5I GGATG 4 cut(s) 37, 90, 213, 273
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 2 cut(s) 12, 58
BstMBI GATC 2 cut(s) 9, 55
BstMWI GCNNNNNNNGC 2 cut(s) 44, 101
BstNI CCWGG 2 cut(s) 127, 243
BstSCI CCNGG 3 cut(s) 125, 241, 284
BstV1I GCAGC 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 107
BsuRI GGCC 2 cut(s) 241, 284
BtgZI GCGATG 1 cut(s) 62
BtrI CACGTC 1 cut(s) 158
BtsCI GGATG 4 cut(s) 37, 90, 213, 273
CfoI GCGC 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 282
CseI GACGC 1 cut(s) 27
CviAII CATG 2 cut(s) 96, 168
CviJI RGCY 3 cut(s) 74, 241, 284
CviKI_1 RGCY 3 cut(s) 74, 241, 284
DpnI GATC 2 cut(s) 11, 57
DpnII GATC 2 cut(s) 9, 55
EcoRII CCWGG 2 cut(s) 125, 241
FaeI CATG 2 cut(s) 99, 171
FaiI YATR 4 cut(s) 8, 97, 169, 293
FaqI GGGAC 1 cut(s) 168
FatI CATG 2 cut(s) 95, 167
Fnu4HI GCNGC 3 cut(s) 36, 191, 239
FokI GGATG 4 cut(s) 44, 97, 220, 280
Fsp4HI GCNGC 3 cut(s) 36, 191, 239
FspBI CTAG 1 cut(s) 215
GlaI GCGC 1 cut(s) 194
GluI GCNGC 3 cut(s) 36, 191, 239
GsaI CCCAGC 1 cut(s) 267
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 2 cut(s) 241, 284
HapII CCGG 1 cut(s) 285
HgaI GACGC 1 cut(s) 27
HhaI GCGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 2 cut(s) 99, 171
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HpaII CCGG 1 cut(s) 285
HphI GGTGA 1 cut(s) 65
Hpy99I CGWCG 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 101
HpySE526I ACGT 1 cut(s) 157
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 2 cut(s) 99, 171
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 2 cut(s) 9, 55
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 6 cut(s) 112, 132, 139, 228, 249, 255
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 1 cut(s) 22
MaeI CTAG 1 cut(s) 215
MaeII ACGT 1 cut(s) 157
MalI GATC 2 cut(s) 11, 57
MboI GATC 2 cut(s) 9, 55
MboII GAAGA 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 5 cut(s) 61, 75, 194, 228, 266
MseI TTAA 1 cut(s) 132
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 3 cut(s) 127, 243, 286
MvaI CCWGG 2 cut(s) 127, 243
MwoI GCNNNNNNNGC 2 cut(s) 44, 101
NciI CCSGG 1 cut(s) 286
NdeII GATC 2 cut(s) 9, 55
NlaIII CATG 2 cut(s) 99, 171
PkrI GCNGC 3 cut(s) 37, 192, 240
Psp6I CCWGG 2 cut(s) 125, 241
PspFI CCCAGC 1 cut(s) 263
PspGI CCWGG 2 cut(s) 125, 241
PspPI GGNCC 1 cut(s) 282
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 3 cut(s) 36, 191, 239
Sau3AI GATC 2 cut(s) 9, 55
Sau96I GGNCC 1 cut(s) 282
ScrFI CCNGG 3 cut(s) 127, 243, 286
SetI ASST 5 cut(s) 24, 72, 160, 220, 277
SfaNI GCATC 1 cut(s) 22
SsiI CCGC 3 cut(s) 35, 226, 238
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 3 cut(s) 125, 241, 284
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 160
TauI GCSGC 2 cut(s) 38, 241
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseI GCWGC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 200
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.