Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Reverse (-)

59957688 .. 59962544

Gene Structure 4857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG412600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGGAGCTTGGATCAGTTCAAGTCCCTATCCAAATCGGTCTCAGAAGGACCTCCGAAGACGTTCACCTACTTTTCACGTCCGCCGGAGTCGACTTTGTTGGGAAGCTTGGCGAATTTGAAGCTTACCACAGAGGGCCAGGCAGATAGCATAGAGCAGGACATTGAGAACATGGTTAGGGGCTTCATTGAGAAGCCCAACTATATCATTATGGCTATTTCCCCTGCCAACCAAGATCTTGCTACGTCTGATGCAATTAAGATCTCTCGTGAAGTAGATCCCAAAGGTGAGAGGACATTTGGAGTTCTCACAAAGATTGATCTTATGGACCAAGGTACAAATGCAGTCGATGTAAGTTTGCTTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

122

Amino Acids

13.44

Weight (kDa)

4.94

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	50 - 106	4e-12	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	92
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	2 cut(s)	21, 272
AcsI	RAATTY	1 cut(s)	115
AfaI	GTAC	1 cut(s)	337
AgsI	TTSAA	2 cut(s)	22, 121
AjiI	CACGTC	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	3 cut(s)	9, 108, 124
AluI	AGCT	3 cut(s)	9, 108, 124
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	2 cut(s)	21, 272
AoxI	GGCC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	115
Asp700I	GAANNNNTTC	1 cut(s)	62
AspS9I	GGNCC	3 cut(s)	50, 136, 328
AsuHPI	GGTGA	2 cut(s)	58, 299
AvaII	GGWCC	2 cut(s)	50, 328
BarI	GAAGNNNNNNTAC	1 cut(s)	345
BauI	CACGAG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	46
BglII	AGATCT	2 cut(s)	235, 261
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	2 cut(s)	50, 328
BmgBI	CACGTC	1 cut(s)	80
BmgT120I	GGNCC	3 cut(s)	50, 136, 328
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	241
BpiI	GAAGAC	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	10
BsmAI	GTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	138
Bso31I	GGTCTC	1 cut(s)	46
Bsp143I	GATC	5 cut(s)	13, 235, 261, 277, 319
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	56
BspPI	GGATC	2 cut(s)	21, 272
BspTNI	GGTCTC	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	5 cut(s)	13, 235, 261, 277, 319
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	331
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	43
BstKTI	GATC	5 cut(s)	16, 238, 264, 280, 322
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	5 cut(s)	13, 235, 261, 277, 319
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstV2I	GAAGAC	1 cut(s)	65
BstX2I	RGATCY	3 cut(s)	235, 261, 277
BstYI	RGATCY	3 cut(s)	235, 261, 277
BsuRI	GGCC	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	80
Cfr13I	GGNCC	3 cut(s)	50, 136, 328
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	7 cut(s)	9, 108, 124, 138, 183, 196, 215
CviKI_1	RGCY	7 cut(s)	9, 108, 124, 138, 183, 196, 215
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	1 cut(s)	43
DpnI	GATC	5 cut(s)	15, 237, 263, 279, 321
DpnII	GATC	5 cut(s)	13, 235, 261, 277, 319
EciI	GGCGGA	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	331
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	2 cut(s)	50, 328
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	1 cut(s)	175
FaiI	YATR	5 cut(s)	152, 173, 204, 212, 326
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HindIII	AAGCTT	2 cut(s)	106, 122
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	2 cut(s)	58, 299
Hpy166II	GTNNAC	2 cut(s)	66, 93
Hpy188I	TCNGA	3 cut(s)	46, 57, 250
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	2 cut(s)	66, 93
HpyAV	CCTTC	1 cut(s)	41
HpyCH4IV	ACGT	3 cut(s)	62, 79, 245
HpyCH4V	TGCA	2 cut(s)	254, 344
HpyF3I	CTNAG	1 cut(s)	43
HpySE526I	ACGT	3 cut(s)	62, 79, 245
Hsp92II	CATG	1 cut(s)	175
Kzo9I	GATC	5 cut(s)	13, 235, 261, 277, 319
LmnI	GCTCC	1 cut(s)	6
LpnPI	CCDG	5 cut(s)	99, 125, 143, 152, 237
LweI	GCATC	1 cut(s)	241
MaeII	ACGT	3 cut(s)	62, 79, 245
MalI	GATC	5 cut(s)	15, 237, 263, 279, 321
MboI	GATC	5 cut(s)	13, 235, 261, 277, 319
MboII	GAAGA	1 cut(s)	70
MflI	RGATCY	3 cut(s)	235, 261, 277
MluCI	AATT	2 cut(s)	115, 255
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	3 cut(s)	63, 127, 285
MroXI	GAANNNNTTC	1 cut(s)	62
MseI	TTAA	1 cut(s)	258
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
NdeII	GATC	5 cut(s)	13, 235, 261, 277, 319
NlaIII	CATG	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspPI	GGNCC	3 cut(s)	50, 136, 328
PspPPI	RGGWCCY	1 cut(s)	50
PsuI	RGATCY	3 cut(s)	235, 261, 277
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
SalI	GTCGAC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	258
Sau3AI	GATC	5 cut(s)	13, 235, 261, 277, 319
Sau96I	GGNCC	3 cut(s)	50, 136, 328
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	140
SfaNI	GCATC	1 cut(s)	241
SinI	GGWCC	2 cut(s)	50, 328
Sse9I	AATT	2 cut(s)	115, 255
SsiI	CCGC	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	331
TaiI	ACGT	3 cut(s)	65, 82, 248
TaqI	TCGA	2 cut(s)	92, 348
TaqII	GACCGA	1 cut(s)	28
TasI	AATT	2 cut(s)	115, 255
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TspDTI	ATGAA	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	50, 328
XapI	RAATTY	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	92
XmnI	GAANNNNTTC	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.