Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Reverse (-)

30936404 .. 30951078

Gene Structure 14675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG300100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGGTTTCGATTAGAGTTCCAAAAGGTGGAAACGTCCAGATCATCATCGCTGTCCACCTCCAGCAGCTTTCACTACCTCTCCAAGTGCCTCCTTCGAGGCACCGTCGTTCTCCAGGTCCTCTACGGTCACATCCACTTCCCTAACTCCAACGACATCATATTTGGTAAGGAGAAATCAATAGAGTTGGTGATAATTGGTGAAGATGGGGGATTGTATAGTCTATATGTGAGCCTACCATGGAATGATAGATTCCGAACTCGAAACCGCCAGGCCAGGGCTCCATCTGCAAGCACATCGAAAGTTGCTAGATCTATAGCCTTAAGGATAAAGGAGGTGCAGATGAAACGTATTAGAAAAACCGTTTCTAAACCACCTATTACTTCTCCAAATCGTAAACCTGCTACTCCCAAGAAGGCTGAAGCAAGACTGACAGAAGCCAACAAGGCTACCCTCCCTAGGAGAAGTCCGCGAAAACATAAAGCTACTCAGTCCAGCAAGGATGCGTCCGCCAGGAGAAGTATGCCACCGCCTAAAGCAGGAAATTCCAAGAAGGCTGTGGCAACAAAGAAGTCGTCGTCCAGTCCTTCTTGCTTATGTCATTTTGTCATGTTGCTCATGGGTAGTGTGGCTTTTGATGTTGGAGTATTGTATGCAGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

221

Amino Acids

24.39

Weight (kDa)

10.75

Isoelectric Point (pI)

66.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	409
AccB1I	GGYRCC	1 cut(s)	101
AccB7I	CCANNNNNTGG	1 cut(s)	28
AccII	CGCG	1 cut(s)	472
AciI	CCGC	4 cut(s)	268, 470, 510, 530
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	1 cut(s)	441
AfiI	CCNNNNNNNGG	4 cut(s)	28, 277, 459, 539
AflII	CTTAAG	1 cut(s)	322
AjnI	CCWGG	4 cut(s)	114, 270, 275, 512
AluBI	AGCT	2 cut(s)	69, 485
AluI	AGCT	2 cut(s)	69, 485
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	2 cut(s)	66, 656
ApoI	RAATTY	1 cut(s)	544
ArsI	GACNNNNNNTTYG	4 cut(s)	146, 178, 560, 592
AspA2I	CCTAGG	1 cut(s)	458
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	202, 212
AvaII	GGWCC	1 cut(s)	118
AvrII	CCTAGG	1 cut(s)	458
BanI	GGYRCC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	2 cut(s)	200, 292
BcgI	CGANNNNNNTGC	2 cut(s)	279, 313
BciT130I	CCWGG	4 cut(s)	116, 272, 277, 514
BfaI	CTAG	2 cut(s)	309, 459
BfmI	CTRYAG	1 cut(s)	315
BfrI	CTTAAG	1 cut(s)	322
BfuAI	ACCTGC	1 cut(s)	409
BglI	GCCNNNNNGGC	1 cut(s)	446
BglII	AGATCT	1 cut(s)	311
BisI	GCNGC	2 cut(s)	67, 657
BlnI	CCTAGG	1 cut(s)	458
BlsI	GCNGC	2 cut(s)	68, 658
Bme1390I	CCNGG	4 cut(s)	116, 272, 277, 514
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	103, 282
BmrFI	CCNGG	4 cut(s)	116, 272, 277, 514
BmsI	GCATC	1 cut(s)	493
BpmI	CTGGAG	2 cut(s)	46, 98
BsaBI	GATNNNNATC	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	239, 276, 458
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 277, 459, 539
Bse1I	ACTGG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	46
BseBI	CCWGG	4 cut(s)	116, 272, 277, 514
BseDI	CCNNGG	3 cut(s)	239, 276, 458
BseGI	GGATG	2 cut(s)	132, 508
BseJI	GATNNNNATC	1 cut(s)	46
BseLI	CCNNNNNNNGG	4 cut(s)	28, 277, 459, 539
BseMII	CTCAG	1 cut(s)	503
BseNI	ACTGG	1 cut(s)	582
BseXI	GCAGC	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	359
Bsh1236I	CGCG	1 cut(s)	472
BshFI	GGCC	1 cut(s)	275
BshNI	GGYRCC	1 cut(s)	101
BslI	CCNNNNNNNGG	4 cut(s)	28, 277, 459, 539
BsnI	GGCC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	41, 311
Bsp19I	CCATGG	1 cut(s)	239
BspACI	CCGC	4 cut(s)	268, 470, 510, 530
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	472
BspLI	GGNNCC	2 cut(s)	103, 282
BspMI	ACCTGC	1 cut(s)	409
BspT107I	GGYRCC	1 cut(s)	101
BspTI	CTTAAG	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	582
BssECI	CCNNGG	3 cut(s)	239, 276, 458
BssMI	GATC	2 cut(s)	41, 311
BssT1I	CCWWGG	2 cut(s)	239, 458
Bst2UI	CCWGG	4 cut(s)	116, 272, 277, 514
Bst4CI	ACNGT	3 cut(s)	106, 128, 364
BstAFI	CTTAAG	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	1 cut(s)	489
BstDSI	CCRYGG	1 cut(s)	239
BstENI	CCTNNNNNAGG	1 cut(s)	537
BstF5I	GGATG	2 cut(s)	132, 508
BstFNI	CGCG	1 cut(s)	472
BstKTI	GATC	2 cut(s)	44, 314
BstMBI	GATC	2 cut(s)	41, 311
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 446
BstNI	CCWGG	4 cut(s)	116, 272, 277, 514
BstSCI	CCNGG	4 cut(s)	114, 270, 275, 512
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	472
BstV1I	GCAGC	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	275
BtgI	CCRYGG	1 cut(s)	239
BtgZI	GCGATG	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	132, 508
BveI	ACCTGC	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	1 cut(s)	495
CviAII	CATG	3 cut(s)	240, 610, 619
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	2 cut(s)	43, 313
DpnII	GATC	2 cut(s)	41, 311
EciI	GGCGGA	1 cut(s)	499
Eco130I	CCWWGG	2 cut(s)	239, 458
Eco24I	GRGCYC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	441
EcoNI	CCTNNNNNAGG	1 cut(s)	537
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRII	CCWGG	4 cut(s)	114, 270, 275, 512
EcoT14I	CCWWGG	2 cut(s)	239, 458
EcoT38I	GRGCYC	1 cut(s)	283
ErhI	CCWWGG	2 cut(s)	239, 458
FaeI	CATG	3 cut(s)	243, 613, 622
FatI	CATG	3 cut(s)	239, 609, 618
Fnu4HI	GCNGC	2 cut(s)	67, 657
FokI	GGATG	2 cut(s)	119, 515
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	2 cut(s)	67, 657
FspBI	CTAG	2 cut(s)	309, 459
GluI	GCNGC	2 cut(s)	67, 657
GsuI	CTGGAG	2 cut(s)	46, 98
HaeIII	GGCC	1 cut(s)	275
HgaI	GACGC	1 cut(s)	495
Hin1II	CATG	3 cut(s)	243, 613, 622
HinfI	GANTC	1 cut(s)	252
HphI	GGTGA	2 cut(s)	202, 212
Hpy166II	GTNNAC	2 cut(s)	57, 398
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	2 cut(s)	39, 663
Hpy8I	GTNNAC	2 cut(s)	57, 398
Hpy99I	CGWCG	2 cut(s)	110, 580
HpyAV	CCTTC	4 cut(s)	104, 409, 547, 597
HpyCH4III	ACNGT	3 cut(s)	106, 128, 364
HpyCH4IV	ACGT	2 cut(s)	35, 349
HpyCH4V	TGCA	3 cut(s)	290, 340, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 446
HpyF3I	CTNAG	1 cut(s)	489
HpySE526I	ACGT	2 cut(s)	35, 349
Hsp92II	CATG	3 cut(s)	243, 613, 622
Kzo9I	GATC	2 cut(s)	41, 311
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	2 cut(s)	309, 459
MaeII	ACGT	2 cut(s)	35, 349
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	2 cut(s)	43, 313
MboI	GATC	2 cut(s)	41, 311
MboII	GAAGA	1 cut(s)	215
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	2 cut(s)	195, 544
MmeI	TCCRAC	2 cut(s)	174, 622
MnlI	CCTC	7 cut(s)	70, 89, 92, 101, 131, 328, 464
MseI	TTAA	1 cut(s)	323
MspCI	CTTAAG	1 cut(s)	322
MspR9I	CCNGG	4 cut(s)	116, 272, 277, 514
MvaI	CCWGG	4 cut(s)	116, 272, 277, 514
MvnI	CGCG	1 cut(s)	472
MwoI	GCNNNNNNNGC	2 cut(s)	287, 446
NcoI	CCATGG	1 cut(s)	239
NdeII	GATC	2 cut(s)	41, 311
NlaIII	CATG	3 cut(s)	243, 613, 622
NlaIV	GGNNCC	2 cut(s)	103, 282
NmuCI	GTSAC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	252
PflMI	CCANNNNNTGG	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	68, 658
PpuMI	RGGWCCY	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	4 cut(s)	114, 270, 275, 512
PspGI	CCWGG	4 cut(s)	114, 270, 275, 512
PspN4I	GGNNCC	2 cut(s)	103, 282
PspPI	GGNCC	1 cut(s)	118
PspPPI	RGGWCCY	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	2 cut(s)	67, 657
Sau3AI	GATC	2 cut(s)	41, 311
Sau96I	GGNCC	1 cut(s)	118
ScrFI	CCNGG	4 cut(s)	116, 272, 277, 514
SduI	GDGCHC	1 cut(s)	283
SfaNI	GCATC	1 cut(s)	493
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	2 cut(s)	195, 544
SsiI	CCGC	4 cut(s)	268, 470, 510, 530
SspMI	CTAG	2 cut(s)	309, 459
StyD4I	CCNGG	4 cut(s)	114, 270, 275, 512
StyI	CCWWGG	2 cut(s)	239, 458
TaaI	ACNGT	3 cut(s)	106, 128, 364
TaiI	ACGT	2 cut(s)	38, 352
TaqI	TCGA	4 cut(s)	10, 97, 262, 299
TasI	AATT	2 cut(s)	195, 544
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	2 cut(s)	66, 656
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	359
Van91I	CCANNNNNTGG	1 cut(s)	28
Vha464I	CTTAAG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	118
XagI	CCTNNNNNAGG	1 cut(s)	537
XapI	RAATTY	1 cut(s)	544
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
XmaJI	CCTAGG	1 cut(s)	458
XspI	CTAG	2 cut(s)	309, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.