Synaptonemal complex protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g37881 |
| malus_domestica | MD02G1124000.v1.1 MD15G1238000.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521 |
| rosa_laevigata | RLG00000007907 RLG00000008384 RLG00000009432 |
| rosa_multiflora | Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002 |
| rosa_roxburghii | Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980 |
| rosa_samantha | Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400 |
| rosa_wichuraiana | Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 132 |
| AciI | CCGC | 2 cut(s) | 123, 169 |
| AclWI | GGATC | 1 cut(s) | 60 |
| AcsI | RAATTY | 1 cut(s) | 155 |
| AgsI | TTSAA | 2 cut(s) | 61, 161 |
| AjiI | CACGTC | 1 cut(s) | 120 |
| AluBI | AGCT | 3 cut(s) | 25, 48, 164 |
| AluI | AGCT | 3 cut(s) | 25, 48, 164 |
| Alw26I | GTCTC | 1 cut(s) | 85 |
| AlwI | GGATC | 1 cut(s) | 60 |
| ApoI | RAATTY | 1 cut(s) | 155 |
| AspS9I | GGNCC | 1 cut(s) | 89 |
| AsuHPI | GGTGA | 1 cut(s) | 158 |
| AvaII | GGWCC | 1 cut(s) | 89 |
| BcoDI | GTCTC | 1 cut(s) | 85 |
| BfaI | CTAG | 1 cut(s) | 26 |
| Bme18I | GGWCC | 1 cut(s) | 89 |
| BmgBI | CACGTC | 1 cut(s) | 120 |
| BmgT120I | GGNCC | 1 cut(s) | 89 |
| BmsI | GCATC | 2 cut(s) | 6, 135 |
| BsaI | GGTCTC | 1 cut(s) | 85 |
| BseGI | GGATG | 1 cut(s) | 150 |
| BseMII | CTCAG | 1 cut(s) | 96 |
| BseRI | GAGGAG | 1 cut(s) | 58 |
| BsiSI | CCGG | 1 cut(s) | 126 |
| BslFI | GGGAC | 1 cut(s) | 49 |
| BsmAI | GTCTC | 1 cut(s) | 85 |
| BsmFI | GGGAC | 1 cut(s) | 49 |
| Bso31I | GGTCTC | 1 cut(s) | 85 |
| Bsp143I | GATC | 1 cut(s) | 52 |
| BspACI | CCGC | 2 cut(s) | 123, 169 |
| BspCNI | CTCAG | 1 cut(s) | 95 |
| BspPI | GGATC | 1 cut(s) | 60 |
| BspTNI | GGTCTC | 1 cut(s) | 85 |
| BssMI | GATC | 1 cut(s) | 52 |
| Bst6I | CTCTTC | 1 cut(s) | 119 |
| BstDEI | CTNAG | 1 cut(s) | 82 |
| BstF5I | GGATG | 1 cut(s) | 150 |
| BstKTI | GATC | 1 cut(s) | 55 |
| BstMAI | GTCTC | 1 cut(s) | 85 |
| BstMBI | GATC | 1 cut(s) | 52 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 45 |
| BtrI | CACGTC | 1 cut(s) | 120 |
| BtsCI | GGATG | 1 cut(s) | 150 |
| Cfr13I | GGNCC | 1 cut(s) | 89 |
| CviAII | CATG | 1 cut(s) | 40 |
| CviJI | RGCY | 3 cut(s) | 25, 48, 164 |
| CviKI_1 | RGCY | 3 cut(s) | 25, 48, 164 |
| DdeI | CTNAG | 1 cut(s) | 82 |
| DpnI | GATC | 1 cut(s) | 54 |
| DpnII | GATC | 1 cut(s) | 52 |
| Eam1104I | CTCTTC | 1 cut(s) | 119 |
| EarI | CTCTTC | 1 cut(s) | 119 |
| EciI | GGCGGA | 1 cut(s) | 112 |
| Eco31I | GGTCTC | 1 cut(s) | 85 |
| Eco47I | GGWCC | 1 cut(s) | 89 |
| EcoO109I | RGGNCCY | 1 cut(s) | 89 |
| FaeI | CATG | 1 cut(s) | 43 |
| FaiI | YATR | 1 cut(s) | 41 |
| FaqI | GGGAC | 1 cut(s) | 49 |
| FatI | CATG | 1 cut(s) | 39 |
| FblI | GTMKAC | 1 cut(s) | 132 |
| FokI | GGATG | 1 cut(s) | 157 |
| FspBI | CTAG | 1 cut(s) | 26 |
| HapII | CCGG | 1 cut(s) | 126 |
| Hin1II | CATG | 1 cut(s) | 43 |
| HincII | GTYRAC | 1 cut(s) | 133 |
| HindII | GTYRAC | 1 cut(s) | 133 |
| HinfI | GANTC | 1 cut(s) | 129 |
| HpaII | CCGG | 1 cut(s) | 126 |
| HphI | GGTGA | 1 cut(s) | 158 |
| Hpy166II | GTNNAC | 1 cut(s) | 133 |
| Hpy188I | TCNGA | 1 cut(s) | 36 |
| Hpy188III | TCNNGA | 1 cut(s) | 84 |
| Hpy8I | GTNNAC | 1 cut(s) | 133 |
| HpyAV | CCTTC | 1 cut(s) | 113 |
| HpyCH4IV | ACGT | 1 cut(s) | 119 |
| HpyCH4V | TGCA | 1 cut(s) | 19 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 45 |
| HpyF3I | CTNAG | 1 cut(s) | 82 |
| HpySE526I | ACGT | 1 cut(s) | 119 |
| Hsp92II | CATG | 1 cut(s) | 43 |
| Kzo9I | GATC | 1 cut(s) | 52 |
| LmnI | GCTCC | 1 cut(s) | 45 |
| LpnPI | CCDG | 2 cut(s) | 69, 139 |
| LweI | GCATC | 2 cut(s) | 6, 135 |
| MaeI | CTAG | 1 cut(s) | 26 |
| MaeII | ACGT | 1 cut(s) | 119 |
| MalI | GATC | 1 cut(s) | 54 |
| MboI | GATC | 1 cut(s) | 52 |
| MboII | GAAGA | 1 cut(s) | 106 |
| MluCI | AATT | 2 cut(s) | 155, 178 |
| MlyI | GAGTC | 1 cut(s) | 138 |
| MnlI | CCTC | 4 cut(s) | 36, 77, 80, 102 |
| MspI | CCGG | 1 cut(s) | 126 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 45 |
| NdeII | GATC | 1 cut(s) | 52 |
| NlaIII | CATG | 1 cut(s) | 43 |
| PleI | GAGTC | 1 cut(s) | 137 |
| PpsI | GAGTC | 1 cut(s) | 137 |
| PpuMI | RGGWCCY | 1 cut(s) | 89 |
| Psp5II | RGGWCCY | 1 cut(s) | 89 |
| PspPI | GGNCC | 1 cut(s) | 89 |
| PspPPI | RGGWCCY | 1 cut(s) | 89 |
| SalI | GTCGAC | 1 cut(s) | 131 |
| Sau3AI | GATC | 1 cut(s) | 52 |
| Sau96I | GGNCC | 1 cut(s) | 89 |
| SchI | GAGTC | 1 cut(s) | 138 |
| SetI | ASST | 7 cut(s) | 27, 50, 94, 105, 122, 138, 166 |
| SfaNI | GCATC | 2 cut(s) | 6, 135 |
| SinI | GGWCC | 1 cut(s) | 89 |
| Sse9I | AATT | 2 cut(s) | 155, 178 |
| SsiI | CCGC | 2 cut(s) | 123, 169 |
| SspMI | CTAG | 1 cut(s) | 26 |
| TaiI | ACGT | 1 cut(s) | 122 |
| TaqI | TCGA | 1 cut(s) | 132 |
| TaqII | GACCGA | 1 cut(s) | 67 |
| TasI | AATT | 2 cut(s) | 155, 178 |
| VpaK11BI | GGWCC | 1 cut(s) | 89 |
| XapI | RAATTY | 1 cut(s) | 155 |
| XmiI | GTMKAC | 1 cut(s) | 132 |
| XspI | CTAG | 1 cut(s) | 26 |