Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Reverse (-)

19596049 .. 19596663

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1238000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGTGGTATTCCTTCCAAATCTAAGTCCAAAGTGGTGGATGTTAACGATCAGGTACGGCTTTGTAGAGAGAGAAAACGCCAGCTAGAGTTAGCCCTAGACAGAAGGTCTGCGTTCGCAGACGCACGGTGCAAATACATCCATTCGCTCTTGGCGGTGGGACATGCTGTAGGGATGTTAGCAAATGTTCATCCTCAAAAAATTGGCTCAACGTTTCTGGATTCCGAAATTTCGATGAGCACTGTAGAGGTTGACGGAGAAGAGGACGAGGCCGGGACTGATGGGGAAGTAGTTTGTAGGGTGATGGTGGCTTCGTCGGTGGCCTCATCAGTACAAAGAGATTCTGATGGTGAGGGGAGAGAGATGGTAATAAGTAGTGAAAAGGAGGAAGATTCGAGTAATTTGAATCAAGGGGAGGGAGAAGGGACAATGGAATTATTGGAAGCACTAAAAGTTGTTGAGAAGTATTTCTTTGAAGCTTATTATTCTGGTATGGAGGTTTCCAAGATGCTTGAAACCAACATGGTTCAAGCACAATCTACCTCGAAGGAGATTAAAGGTGCTTTTAATTTTTGGTGTTTTTTTCCTTCTTTCCTCGAAAAATCCACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

205

Amino Acids

22.53

Weight (kDa)

4.84

Isoelectric Point (pI)

33.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF630	PF04783	8 - 57	7.9e-15	Protein of unknown function (DUF630)
DUF632	PF04782	146 - 187	6.6e-06	Protein of unknown function (DUF632)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	155
AclI	AACGTT	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	228
AfaI	GTAC	2 cut(s)	57, 333
AgsI	TTSAA	4 cut(s)	406, 476, 515, 530
AhdI	GACNNNNNGTC	1 cut(s)	106
AluBI	AGCT	2 cut(s)	85, 479
AluI	AGCT	2 cut(s)	85, 479
Alw21I	GWGCWC	1 cut(s)	242
AoxI	GGCC	2 cut(s)	270, 321
ApoI	RAATTY	1 cut(s)	228
Asp700I	GAANNNNTTC	1 cut(s)	467
AsuC2I	CCSGG	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	313, 362
Bbv12I	GWGCWC	1 cut(s)	242
BccI	CCATC	4 cut(s)	275, 298, 341, 358
BceAI	ACGGC	1 cut(s)	74
BcnI	CCSGG	1 cut(s)	274
BfaI	CTAG	2 cut(s)	86, 98
BfmI	CTRYAG	2 cut(s)	168, 243
Bme1390I	CCNGG	1 cut(s)	274
BmeRI	GACNNNNNGTC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	274
BmsI	GCATC	1 cut(s)	498
BpuMI	CCSGG	1 cut(s)	274
BseGI	GGATG	4 cut(s)	46, 138, 180, 190
BshFI	GGCC	2 cut(s)	272, 323
BsiHKAI	GWGCWC	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	3 cut(s)	174, 289, 439
BsmFI	GGGAC	3 cut(s)	174, 289, 439
BsnI	GGCC	2 cut(s)	272, 323
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	2 cut(s)	272, 323
BssMI	GATC	1 cut(s)	49
Bst4CI	ACNGT	2 cut(s)	129, 244
Bst6I	CTCTTC	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	4 cut(s)	46, 138, 180, 190
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	272
BstSFI	CTRYAG	2 cut(s)	168, 243
BstXI	CCANNNNNNTGG	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	272, 323
BtsCI	GGATG	4 cut(s)	46, 138, 180, 190
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	83
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	56, 332
CviAII	CATG	2 cut(s)	164, 523
CviJI	RGCY	8 cut(s)	61, 85, 95, 207, 272, 311, 323, 479
CviKI_1	RGCY	8 cut(s)	61, 85, 95, 207, 272, 311, 323, 479
CviQI	GTAC	2 cut(s)	56, 332
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
DriI	GACNNNNNGTC	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	255
Eam1105I	GACNNNNNGTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	255
FaeI	CATG	2 cut(s)	167, 526
FaiI	YATR	3 cut(s)	165, 494, 524
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	3 cut(s)	174, 289, 439
FatI	CATG	2 cut(s)	163, 522
FokI	GGATG	4 cut(s)	53, 125, 177, 187
FspBI	CTAG	2 cut(s)	86, 98
HaeIII	GGCC	2 cut(s)	272, 323
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	167, 526
HincII	GTYRAC	2 cut(s)	46, 253
HindII	GTYRAC	2 cut(s)	46, 253
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	4 cut(s)	221, 341, 392, 406
HpaI	GTTAAC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	2 cut(s)	313, 362
Hpy166II	GTNNAC	2 cut(s)	46, 253
Hpy188I	TCNGA	2 cut(s)	226, 346
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	2 cut(s)	46, 253
Hpy99I	CGWCG	1 cut(s)	319
HpyAV	CCTTC	5 cut(s)	24, 99, 416, 541, 597
HpyCH4III	ACNGT	2 cut(s)	129, 244
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	1 cut(s)	132
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	167, 526
KspAI	GTTAAC	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	49
LpnPI	CCDG	5 cut(s)	38, 95, 203, 286, 474
LweI	GCATC	1 cut(s)	498
MaeI	CTAG	2 cut(s)	86, 98
MaeII	ACGT	1 cut(s)	212
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	2 cut(s)	272, 401
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	5 cut(s)	201, 228, 400, 434, 568
MroXI	GAANNNNTTC	1 cut(s)	467
MseI	TTAA	3 cut(s)	45, 555, 567
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	274
NciI	CCSGG	1 cut(s)	274
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	2 cut(s)	167, 526
NspI	RCATGY	1 cut(s)	167
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	4 cut(s)	221, 341, 392, 406
Psp1406I	AACGTT	1 cut(s)	212
RsaI	GTAC	2 cut(s)	57, 333
RsaNI	GTAC	2 cut(s)	56, 332
SaqAI	TTAA	3 cut(s)	45, 555, 567
Sau3AI	GATC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	9 cut(s)	57, 87, 110, 215, 252, 481, 501, 545, 562
SfaNI	GCATC	1 cut(s)	498
SfcI	CTRYAG	2 cut(s)	168, 243
Sse9I	AATT	5 cut(s)	201, 228, 400, 434, 568
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	2 cut(s)	86, 98
StyD4I	CCNGG	1 cut(s)	272
TaaI	ACNGT	2 cut(s)	129, 244
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	4 cut(s)	233, 395, 545, 597
TasI	AATT	5 cut(s)	201, 228, 400, 434, 568
TatI	WGTACW	1 cut(s)	331
TfiI	GAWTC	4 cut(s)	221, 341, 392, 406
Tru1I	TTAA	3 cut(s)	45, 555, 567
Tru9I	TTAA	3 cut(s)	45, 555, 567
TscAI	CASTG	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	179
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	228
XceI	RCATGY	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	467
XspI	CTAG	2 cut(s)	86, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.