RLG00000008384

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001608
Physical Location & Seq
Reverse (-)
29901071 .. 29903857
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008384

Sequence Viewer

Length: 522 bp
ATGAAGGAAAAGATGTGGTATGTGATATCTCAAAATGAGCCATCACTTCTTCCAATATCCTTGGCTTCAAAATTGTTGACTGAGGACTGCATGGCATGTGTTGATCTTCTTGAAGTCATGTTGGTGGAACATTTGCAGAGATGGGTTTGTTTTGATTTTTGTTGTGTTCTTGATTTTATTTGGTCATTTGTGTTTCCTGGTGGGTTTTTGGGAGAGAAGGGGCTTTTGAATGGCCAGGCAGTGAGAGATAAAGAAGGGATTCCTGCGTTGGAAGATGTGGGTGCAGGAGTAATAAGTGAGGAAAAGATAGTGGGGAGGGAGTTGTTGGAGCTTTTGAGAGATGTTAAGGACCATTTCATGAAGGCCTATGATTCTGGTTTGGATGTTTCAAGGATGCTAGAGTCTAACATGGTTCATATGCTATCTACATTGGAGGAGATTGAAGAGCAGTTGTCAAGTTGCCTTGAGGTCAAATTATCCGTCGAGTCCTTGACCATTTCCAAGGTCCTTCTATCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

174

Amino Acids

19.49

Weight (kDa)

4.54

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF632 PF04782 108 - 153 9e-07 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 232
AgsI TTSAA 5 cut(s) 69, 113, 229, 390, 443
AjnI CCWGG 2 cut(s) 196, 234
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
AoxI GGCC 2 cut(s) 232, 363
ArsI GACNNNNNNTTYG 2 cut(s) 465, 497
Asp700I GAANNNNTTC 1 cut(s) 258
AspS9I GGNCC 2 cut(s) 349, 505
AvaII GGWCC 2 cut(s) 349, 505
BalI TGGCCA 1 cut(s) 234
BccI CCATC 2 cut(s) 49, 135
BciT130I CCWGG 2 cut(s) 198, 236
BfaI CTAG 1 cut(s) 398
Bme1390I CCNGG 2 cut(s) 198, 236
Bme18I GGWCC 2 cut(s) 349, 505
BmgT120I GGNCC 2 cut(s) 349, 505
BmrFI CCNGG 2 cut(s) 198, 236
BmsI GCATC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 485
BsaJI CCNNGG 2 cut(s) 60, 501
BseBI CCWGG 2 cut(s) 198, 236
BseDI CCNNGG 2 cut(s) 60, 501
BseGI GGATG 2 cut(s) 388, 399
BseMII CTCAG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 449
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 2 cut(s) 234, 365
BsnI GGCC 2 cut(s) 234, 365
Bsp143I GATC 1 cut(s) 103
BspANI GGCC 2 cut(s) 234, 365
BspCNI CTCAG 1 cut(s) 73
BspHI TCATGA 1 cut(s) 357
BspQI GCTCTTC 1 cut(s) 438
BssECI CCNNGG 2 cut(s) 60, 501
BssMI GATC 1 cut(s) 103
BssT1I CCWWGG 2 cut(s) 60, 501
Bst2UI CCWGG 2 cut(s) 198, 236
Bst6I CTCTTC 1 cut(s) 438
BstDEI CTNAG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 388, 399
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstNI CCWGG 2 cut(s) 198, 236
BstNSI RCATGY 1 cut(s) 99
BstSCI CCNGG 2 cut(s) 196, 234
BsuRI GGCC 2 cut(s) 234, 365
BtsCI GGATG 2 cut(s) 388, 399
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 246
CciI TCATGA 1 cut(s) 357
Cfr13I GGNCC 2 cut(s) 349, 505
CviAII CATG 5 cut(s) 91, 96, 118, 358, 409
CviJI RGCY 6 cut(s) 40, 65, 223, 234, 331, 365
CviKI_1 RGCY 6 cut(s) 40, 65, 223, 234, 331, 365
DdeI CTNAG 1 cut(s) 81
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco130I CCWWGG 2 cut(s) 60, 501
Eco147I AGGCCT 1 cut(s) 365
Eco32I GATATC 1 cut(s) 27
Eco47I GGWCC 2 cut(s) 349, 505
EcoO109I RGGNCCY 1 cut(s) 505
EcoRII CCWGG 2 cut(s) 196, 234
EcoRV GATATC 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 60, 501
ErhI CCWWGG 2 cut(s) 60, 501
FaeI CATG 5 cut(s) 94, 99, 121, 361, 412
FatI CATG 5 cut(s) 90, 95, 117, 357, 408
FauNDI CATATG 2 cut(s) 417, 518
FokI GGATG 2 cut(s) 395, 406
FspBI CTAG 1 cut(s) 398
HaeIII GGCC 2 cut(s) 234, 365
Hin1II CATG 5 cut(s) 94, 99, 121, 361, 412
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HinfI GANTC 4 cut(s) 259, 371, 401, 485
Hpy166II GTNNAC 1 cut(s) 78
Hpy188III TCNNGA 3 cut(s) 110, 170, 358
Hpy8I GTNNAC 1 cut(s) 78
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 4 cut(s) 211, 248, 355, 518
HpyCH4V TGCA 3 cut(s) 90, 136, 284
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 5 cut(s) 94, 99, 121, 361, 412
Kzo9I GATC 1 cut(s) 103
LguI GCTCTTC 1 cut(s) 438
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 7 cut(s) 183, 210, 221, 248, 270, 276, 360
LweI GCATC 1 cut(s) 384
MaeI CTAG 1 cut(s) 398
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 4 cut(s) 41, 98, 284, 455
MlsI TGGCCA 1 cut(s) 234
MluCI AATT 2 cut(s) 71, 473
MluNI TGGCCA 1 cut(s) 234
MlyI GAGTC 2 cut(s) 410, 494
MmeI TCCRAC 2 cut(s) 249, 306
MnlI CCTC 5 cut(s) 76, 292, 309, 427, 460
Mox20I TGGCCA 1 cut(s) 234
MroXI GAANNNNTTC 1 cut(s) 258
MscI TGGCCA 1 cut(s) 234
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 234
MspR9I CCNGG 2 cut(s) 198, 236
MvaI CCWGG 2 cut(s) 198, 236
NdeI CATATG 2 cut(s) 417, 518
NdeII GATC 1 cut(s) 103
NlaIII CATG 5 cut(s) 94, 99, 121, 361, 412
NspI RCATGY 1 cut(s) 99
PagI TCATGA 1 cut(s) 357
PceI AGGCCT 1 cut(s) 365
PciSI GCTCTTC 1 cut(s) 438
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 2 cut(s) 259, 371
PleI GAGTC 2 cut(s) 409, 493
PpsI GAGTC 2 cut(s) 409, 493
PpuMI RGGWCCY 1 cut(s) 505
Psp5II RGGWCCY 1 cut(s) 505
Psp6I CCWGG 2 cut(s) 196, 234
PspGI CCWGG 2 cut(s) 196, 234
PspPI GGNCC 2 cut(s) 349, 505
PspPPI RGGWCCY 1 cut(s) 505
RseI CAYNNNNRTG 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 438
SaqAI TTAA 1 cut(s) 345
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 2 cut(s) 349, 505
SchI GAGTC 2 cut(s) 410, 494
ScrFI CCNGG 2 cut(s) 198, 236
SetI ASST 3 cut(s) 333, 471, 507
SfaNI GCATC 1 cut(s) 384
SinI GGWCC 2 cut(s) 349, 505
SmiMI CAYNNNNRTG 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 2 cut(s) 71, 473
SseBI AGGCCT 1 cut(s) 365
SspMI CTAG 1 cut(s) 398
StuI AGGCCT 1 cut(s) 365
StyD4I CCNGG 2 cut(s) 196, 234
StyI CCWWGG 2 cut(s) 60, 501
TaqI TCGA 1 cut(s) 483
TasI AATT 2 cut(s) 71, 473
TfiI GAWTC 2 cut(s) 259, 371
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 246
TspDTI ATGAA 4 cut(s) 17, 346, 374, 404
TspGWI ACGGA 1 cut(s) 469
TspRI CASTG 1 cut(s) 246
VpaK11BI GGWCC 2 cut(s) 349, 505
XceI RCATGY 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.