Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Reverse (-)

52075658 .. 52087236

Gene Structure 11579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG221600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCAGAAGCTAGGGTTTCCGAGCATGAGGAGCTTGGATCAGTTCAAGTCCCTCTCGAAATCGGTCTTAGGAGGACCTCCGAAGACCTTCGCCTACTCTTCGCGTCCGCCGGAGTCGGCCTCGTCGGGAAGCTTCGCTAACTTGAAGCTCACCGCAGAGAAATTAGTTAAAGAGCAAGCTTCTGTGAAAACAGATCTGGAAATGGCGAACACTAAGCTGAAAAAATCAATGGAGCACATCCGTGCATTAGAGGAAAAATTGCAGAACGCTTTCAATGAAAATGCTAAGTTTAAGGTGAAGCAGAAGGAAGATGAGAAGCTGTGGAAGGGATTAGAGTCTAAGTTTTCTTCAACTAAAACATTGTGTGATCAACTCACAGAAACTTTACAGCTCTTAGCTGGTCAAGTTCAGGATGCTGAGAAAGATAAAGAGTCCTTTGAAGGCAAACTCTCTGCGAGTGCAGTAGCTCTTGATGGTTTGAGCCAACAAATGAATGATCTGTCTATAAAGCTAGAGTCAGCAGAGGAAACTATAAGGAATCGTGAAAAGGAGCTGGAGGAACGCAGACTCGAGAAAGGGGAGACAGACAAACTTTACAGAAATGAACAGTGCAGAACTGCAAATCTTATACAGGAAAAAGGGAACCAGACCACCCAAGTTACTTGGAATAAGGTTTCTTACCCTTCAAGTGATGTTCAAATATATTCTTATTCTCTCTGGACGGTGACGGCGAACAATGTACGCCGGCGTAAGTTGCTGACGGCGAAGCTGACGAGCTTGACGAAACCAATTTTTGATCACAAGCTAATCAAAACCAATCTTTACATTTACCTCGAGCACAACTACATCCATAGCAATACTTCACCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

290

Amino Acids

33.07

Weight (kDa)

9.19

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	103
AciI	CCGC	2 cut(s)	107, 153
AclWI	GGATC	1 cut(s)	45
AfaI	GTAC	1 cut(s)	741
AgsI	TTSAA	7 cut(s)	46, 145, 274, 351, 440, 687, 698
AleI	CACNNNNGTG	1 cut(s)	240
Alw21I	GWGCWC	2 cut(s)	237, 840
Alw26I	GTCTC	1 cut(s)	575
AlwI	GGATC	1 cut(s)	45
Ama87I	CYCGRG	2 cut(s)	569, 833
AoxI	GGCC	1 cut(s)	117
Asp700I	GAANNNNTTC	2 cut(s)	86, 269
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	4 cut(s)	142, 307, 736, 855
AvaI	CYCGRG	2 cut(s)	569, 833
AvaII	GGWCC	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	89
Bbv12I	GWGCWC	2 cut(s)	237, 840
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	2 cut(s)	744, 777
BclI	TGATCA	2 cut(s)	367, 796
BcoDI	GTCTC	1 cut(s)	575
BfaI	CTAG	2 cut(s)	11, 512
BglII	AGATCT	1 cut(s)	193
Bme18I	GGWCC	1 cut(s)	74
BmeT110I	CYCGRG	2 cut(s)	569, 833
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	644
BmsI	GCATC	1 cut(s)	403
BpiI	GAAGAC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpmI	CTGGAG	1 cut(s)	575
Bse118I	RCCGGY	1 cut(s)	744
BseGI	GGATG	3 cut(s)	237, 418, 846
BseMII	CTCAG	1 cut(s)	408
BseRI	GAGGAG	1 cut(s)	43
BsgI	GTGCAG	2 cut(s)	480, 631
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	1 cut(s)	119
BsiHKAI	GWGCWC	2 cut(s)	237, 840
BsiHKCI	CYCGRG	2 cut(s)	569, 833
BsiSI	CCGG	2 cut(s)	110, 745
BslFI	GGGAC	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	575
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	119
BsoBI	CYCGRG	2 cut(s)	569, 833
Bsp1286I	GDGCHC	2 cut(s)	237, 840
Bsp143I	GATC	5 cut(s)	37, 193, 367, 496, 796
BspACI	CCGC	2 cut(s)	107, 153
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	644
BspPI	GGATC	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	744
BssAI	RCCGGY	1 cut(s)	744
BssMI	GATC	5 cut(s)	37, 193, 367, 496, 796
Bst4CI	ACNGT	2 cut(s)	609, 724
Bst6I	CTCTTC	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	177, 746
BstDEI	CTNAG	6 cut(s)	67, 213, 285, 339, 394, 417
BstF5I	GGATG	3 cut(s)	237, 418, 846
BstFNI	CGCG	1 cut(s)	103
BstKTI	GATC	5 cut(s)	40, 196, 370, 499, 799
BstMAI	GTCTC	1 cut(s)	575
BstMBI	GATC	5 cut(s)	37, 193, 367, 496, 796
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 754
BstUI	CGCG	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	3 cut(s)	237, 418, 846
BtsIMutI	CAGTG	1 cut(s)	614
Cac8I	GCNNGC	2 cut(s)	177, 746
Cfr10I	RCCGGY	1 cut(s)	744
Cfr13I	GGNCC	1 cut(s)	74
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	740
CviAII	CATG	1 cut(s)	25
CviQI	GTAC	1 cut(s)	740
DdeI	CTNAG	6 cut(s)	67, 213, 285, 339, 394, 417
DpnI	GATC	5 cut(s)	39, 195, 369, 498, 798
DpnII	GATC	5 cut(s)	37, 193, 367, 496, 796
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	74
Eco88I	CYCGRG	2 cut(s)	569, 833
EcoO109I	RGGNCCY	1 cut(s)	74
FaeI	CATG	1 cut(s)	28
FaiI	YATR	6 cut(s)	26, 506, 533, 629, 703, 852
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	1 cut(s)	24
FbaI	TGATCA	2 cut(s)	367, 796
FokI	GGATG	3 cut(s)	224, 425, 833
FspBI	CTAG	2 cut(s)	11, 512
GsuI	CTGGAG	1 cut(s)	575
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	2 cut(s)	110, 745
HgaI	GACGC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	28
HindIII	AAGCTT	2 cut(s)	130, 177
HinfI	GANTC	6 cut(s)	113, 335, 431, 515, 538, 567
HpaII	CCGG	2 cut(s)	110, 745
HphI	GGTGA	4 cut(s)	142, 307, 736, 855
Hpy188I	TCNGA	2 cut(s)	21, 81
Hpy188III	TCNNGA	8 cut(s)	55, 126, 197, 410, 470, 542, 571, 718
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	5 cut(s)	97, 298, 319, 434, 693
HpyCH4III	ACNGT	2 cut(s)	609, 724
HpyCH4V	TGCA	6 cut(s)	4, 245, 262, 461, 612, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 754
HpyF3I	CTNAG	6 cut(s)	67, 213, 285, 339, 394, 417
Hsp92II	CATG	1 cut(s)	28
KroI	GCCGGC	1 cut(s)	744
KroNI	GCCGGC	1 cut(s)	746
Ksp22I	TGATCA	2 cut(s)	367, 796
Kzo9I	GATC	5 cut(s)	37, 193, 367, 496, 796
LmnI	GCTCC	3 cut(s)	30, 232, 550
LpnPI	CCDG	9 cut(s)	123, 182, 384, 395, 539, 617, 659, 703, 758
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	2 cut(s)	11, 512
MaeIII	GTNAC	2 cut(s)	658, 724
MalI	GATC	5 cut(s)	39, 195, 369, 498, 798
MboI	GATC	5 cut(s)	37, 193, 367, 496, 796
MboII	GAAGA	4 cut(s)	90, 94, 320, 339
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	2 cut(s)	237, 840
MluCI	AATT	3 cut(s)	161, 257, 789
MlyI	GAGTC	5 cut(s)	122, 344, 440, 524, 561
MnlI	CCTC	9 cut(s)	21, 62, 65, 87, 130, 244, 517, 550, 842
MreI	CGCCGGCG	1 cut(s)	744
MroNI	GCCGGC	1 cut(s)	744
MroXI	GAANNNNTTC	2 cut(s)	86, 269
MseI	TTAA	2 cut(s)	168, 291
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	2 cut(s)	110, 745
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	30, 754
NaeI	GCCGGC	1 cut(s)	746
NdeII	GATC	5 cut(s)	37, 193, 367, 496, 796
NgoMIV	GCCGGC	1 cut(s)	744
NlaIII	CATG	1 cut(s)	28
NlaIV	GGNNCC	1 cut(s)	644
NmuCI	GTSAC	1 cut(s)	724
OliI	CACNNNNGTG	1 cut(s)	240
PaeR7I	CTCGAG	2 cut(s)	569, 833
PcsI	WCGNNNNNNNCGW	2 cut(s)	728, 779
PdiI	GCCGGC	1 cut(s)	746
PdmI	GAANNNNTTC	2 cut(s)	86, 269
PfeI	GAWTC	1 cut(s)	538
PleI	GAGTC	5 cut(s)	121, 343, 439, 523, 561
PpsI	GAGTC	5 cut(s)	121, 343, 439, 523, 561
PpuMI	RGGWCCY	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	644
PspPI	GGNCC	1 cut(s)	74
PspPPI	RGGWCCY	1 cut(s)	74
PspXI	VCTCGAGB	1 cut(s)	833
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	1 cut(s)	741
RsaNI	GTAC	1 cut(s)	740
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	168, 291
Sau3AI	GATC	5 cut(s)	37, 193, 367, 496, 796
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	5 cut(s)	122, 344, 440, 524, 561
SduI	GDGCHC	2 cut(s)	237, 840
SfaNI	GCATC	1 cut(s)	403
Sfr274I	CTCGAG	2 cut(s)	569, 833
SgrAI	CRCCGGYG	1 cut(s)	744
SinI	GGWCC	1 cut(s)	74
SlaI	CTCGAG	2 cut(s)	569, 833
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	2 cut(s)	569, 833
SmoI	CTYRAG	2 cut(s)	569, 833
Sse9I	AATT	3 cut(s)	161, 257, 789
SsiI	CCGC	2 cut(s)	107, 153
SspMI	CTAG	2 cut(s)	11, 512
TaaI	ACNGT	2 cut(s)	609, 724
TaqI	TCGA	3 cut(s)	56, 570, 834
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	3 cut(s)	161, 257, 789
TfiI	GAWTC	1 cut(s)	538
Tru1I	TTAA	2 cut(s)	168, 291
Tru9I	TTAA	2 cut(s)	168, 291
TscAI	CASTG	1 cut(s)	614
TseFI	GTSAC	1 cut(s)	724
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	3 cut(s)	291, 506, 618
TspGWI	ACGGA	1 cut(s)	230
TspRI	CASTG	1 cut(s)	614
VpaK11BI	GGWCC	1 cut(s)	74
XhoI	CTCGAG	2 cut(s)	569, 833
XmnI	GAANNNNTTC	2 cut(s)	86, 269
XspI	CTAG	2 cut(s)	11, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.