Synaptonemal complex protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g37881 |
| malus_domestica | MD02G1124000.v1.1 MD15G1238000.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521 |
| rosa_laevigata | RLG00000007907 RLG00000008384 RLG00000009432 |
| rosa_multiflora | Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002 |
| rosa_roxburghii | Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980 |
| rosa_samantha | Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400 |
| rosa_wichuraiana | Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 39 |
| AgsI | TTSAA | 5 cut(s) | 46, 105, 317, 358, 391 |
| AjnI | CCWGG | 1 cut(s) | 162 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 350, 382 |
| AleI | CACNNNNGTG | 1 cut(s) | 12 |
| AluBI | AGCT | 5 cut(s) | 73, 145, 152, 221, 265 |
| AluI | AGCT | 5 cut(s) | 73, 145, 152, 221, 265 |
| Alw21I | GWGCWC | 1 cut(s) | 9 |
| Alw26I | GTCTC | 1 cut(s) | 83 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 41 |
| AsuHPI | GGTGA | 2 cut(s) | 79, 383 |
| Bbv12I | GWGCWC | 1 cut(s) | 9 |
| BccI | CCATC | 1 cut(s) | 221 |
| BciT130I | CCWGG | 1 cut(s) | 164 |
| BclI | TGATCA | 1 cut(s) | 121 |
| BcoDI | GTCTC | 1 cut(s) | 83 |
| BfaI | CTAG | 1 cut(s) | 266 |
| BfmI | CTRYAG | 1 cut(s) | 345 |
| Bme1390I | CCNGG | 1 cut(s) | 164 |
| BmrFI | CCNGG | 1 cut(s) | 164 |
| BmsI | GCATC | 2 cut(s) | 157, 388 |
| BpuEI | CTTGAG | 1 cut(s) | 404 |
| Bse1I | ACTGG | 1 cut(s) | 210 |
| BseBI | CCWGG | 1 cut(s) | 164 |
| BseGI | GGATG | 3 cut(s) | 9, 172, 409 |
| BseMII | CTCAG | 1 cut(s) | 162 |
| BseNI | ACTGG | 1 cut(s) | 210 |
| BsgI | GTGCAG | 1 cut(s) | 234 |
| BsiHKAI | GWGCWC | 1 cut(s) | 9 |
| BsmAI | GTCTC | 1 cut(s) | 83 |
| Bsp1286I | GDGCHC | 1 cut(s) | 9 |
| Bsp143I | GATC | 2 cut(s) | 121, 250 |
| BspCNI | CTCAG | 1 cut(s) | 163 |
| BsrI | ACTGG | 1 cut(s) | 210 |
| BssMI | GATC | 2 cut(s) | 121, 250 |
| Bst2UI | CCWGG | 1 cut(s) | 164 |
| BstDEI | CTNAG | 5 cut(s) | 57, 93, 148, 171, 429 |
| BstF5I | GGATG | 3 cut(s) | 9, 172, 409 |
| BstKTI | GATC | 2 cut(s) | 124, 253 |
| BstMAI | GTCTC | 1 cut(s) | 83 |
| BstMBI | GATC | 2 cut(s) | 121, 250 |
| BstNI | CCWGG | 1 cut(s) | 164 |
| BstSCI | CCNGG | 1 cut(s) | 162 |
| BstSFI | CTRYAG | 1 cut(s) | 345 |
| BtsCI | GGATG | 3 cut(s) | 9, 172, 409 |
| BtsIMutI | CAGTG | 1 cut(s) | 217 |
| CviJI | RGCY | 7 cut(s) | 73, 145, 152, 221, 237, 265, 344 |
| CviKI_1 | RGCY | 7 cut(s) | 73, 145, 152, 221, 237, 265, 344 |
| DdeI | CTNAG | 5 cut(s) | 57, 93, 148, 171, 429 |
| DpnI | GATC | 2 cut(s) | 123, 252 |
| DpnII | GATC | 2 cut(s) | 121, 250 |
| DraI | TTTAAA | 1 cut(s) | 193 |
| EcoRII | CCWGG | 1 cut(s) | 162 |
| FaiI | YATR | 4 cut(s) | 76, 260, 287, 302 |
| FbaI | TGATCA | 1 cut(s) | 121 |
| FokI | GGATG | 2 cut(s) | 179, 416 |
| FspBI | CTAG | 1 cut(s) | 266 |
| HinfI | GANTC | 3 cut(s) | 185, 269, 292 |
| HphI | GGTGA | 2 cut(s) | 79, 383 |
| Hpy188I | TCNGA | 1 cut(s) | 413 |
| Hpy188III | TCNNGA | 2 cut(s) | 224, 383 |
| HpyAV | CCTTC | 1 cut(s) | 73 |
| HpyCH4IV | ACGT | 2 cut(s) | 39, 415 |
| HpyCH4V | TGCA | 4 cut(s) | 17, 34, 215, 379 |
| HpyF3I | CTNAG | 5 cut(s) | 57, 93, 148, 171, 429 |
| HpySE526I | ACGT | 2 cut(s) | 39, 415 |
| Ksp22I | TGATCA | 1 cut(s) | 121 |
| Kzo9I | GATC | 2 cut(s) | 121, 250 |
| LmnI | GCTCC | 1 cut(s) | 4 |
| LpnPI | CCDG | 4 cut(s) | 138, 149, 176, 223 |
| LweI | GCATC | 2 cut(s) | 157, 388 |
| MaeI | CTAG | 1 cut(s) | 266 |
| MaeII | ACGT | 2 cut(s) | 39, 415 |
| MalI | GATC | 2 cut(s) | 123, 252 |
| MboI | GATC | 2 cut(s) | 121, 250 |
| MboII | GAAGA | 2 cut(s) | 93, 329 |
| MhlI | GDGCHC | 1 cut(s) | 9 |
| MluCI | AATT | 3 cut(s) | 29, 321, 365 |
| MlyI | GAGTC | 2 cut(s) | 194, 278 |
| MnlI | CCTC | 4 cut(s) | 16, 271, 367, 394 |
| MroXI | GAANNNNTTC | 1 cut(s) | 41 |
| MseI | TTAA | 4 cut(s) | 63, 192, 306, 395 |
| MslI | CAYNNNNRTG | 1 cut(s) | 12 |
| MspR9I | CCNGG | 1 cut(s) | 164 |
| MvaI | CCWGG | 1 cut(s) | 164 |
| NdeII | GATC | 2 cut(s) | 121, 250 |
| OliI | CACNNNNGTG | 1 cut(s) | 12 |
| PdmI | GAANNNNTTC | 1 cut(s) | 41 |
| PfeI | GAWTC | 1 cut(s) | 292 |
| PfoI | TCCNGGA | 1 cut(s) | 162 |
| PleI | GAGTC | 2 cut(s) | 193, 277 |
| PpsI | GAGTC | 2 cut(s) | 193, 277 |
| Psp1406I | AACGTT | 1 cut(s) | 39 |
| Psp6I | CCWGG | 1 cut(s) | 162 |
| PspGI | CCWGG | 1 cut(s) | 162 |
| RseI | CAYNNNNRTG | 1 cut(s) | 12 |
| SaqAI | TTAA | 4 cut(s) | 63, 192, 306, 395 |
| Sau3AI | GATC | 2 cut(s) | 121, 250 |
| SchI | GAGTC | 2 cut(s) | 194, 278 |
| ScrFI | CCNGG | 1 cut(s) | 164 |
| SduI | GDGCHC | 1 cut(s) | 9 |
| SfaNI | GCATC | 2 cut(s) | 157, 388 |
| SfcI | CTRYAG | 1 cut(s) | 345 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 12 |
| SmlI | CTYRAG | 1 cut(s) | 383 |
| SmoI | CTYRAG | 1 cut(s) | 383 |
| Sse9I | AATT | 3 cut(s) | 29, 321, 365 |
| SspMI | CTAG | 1 cut(s) | 266 |
| StyD4I | CCNGG | 1 cut(s) | 162 |
| TaiI | ACGT | 2 cut(s) | 42, 418 |
| TasI | AATT | 3 cut(s) | 29, 321, 365 |
| TfiI | GAWTC | 1 cut(s) | 292 |
| Tru1I | TTAA | 4 cut(s) | 63, 192, 306, 395 |
| Tru9I | TTAA | 4 cut(s) | 63, 192, 306, 395 |
| TscAI | CASTG | 1 cut(s) | 217 |
| TspDTI | ATGAA | 3 cut(s) | 63, 260, 420 |
| TspGWI | ACGGA | 1 cut(s) | 146 |
| TspRI | CASTG | 1 cut(s) | 217 |
| XmnI | GAANNNNTTC | 1 cut(s) | 41 |
| XspI | CTAG | 1 cut(s) | 266 |