Translational activator
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g37881 |
| malus_domestica | MD02G1124000.v1.1 MD15G1238000.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521 |
| rosa_laevigata | RLG00000007907 RLG00000008384 RLG00000009432 |
| rosa_multiflora | Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002 |
| rosa_roxburghii | Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980 |
| rosa_samantha | Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400 |
| rosa_wichuraiana | Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 211 |
| AgsI | TTSAA | 3 cut(s) | 19, 144, 188 |
| Alw26I | GTCTC | 2 cut(s) | 62, 339 |
| BccI | CCATC | 1 cut(s) | 124 |
| BcoDI | GTCTC | 2 cut(s) | 62, 339 |
| BfaI | CTAG | 1 cut(s) | 315 |
| BmsI | GCATC | 2 cut(s) | 23, 330 |
| BsaI | GGTCTC | 1 cut(s) | 62 |
| BsaJI | CCNNGG | 1 cut(s) | 135 |
| Bse3DI | GCAATG | 1 cut(s) | 350 |
| BseDI | CCNNGG | 1 cut(s) | 135 |
| BseGI | GGATG | 1 cut(s) | 18 |
| BseMI | GCAATG | 1 cut(s) | 350 |
| BseRI | GAGGAG | 1 cut(s) | 80 |
| BsmAI | GTCTC | 2 cut(s) | 62, 339 |
| Bso31I | GGTCTC | 1 cut(s) | 62 |
| Bsp143I | GATC | 1 cut(s) | 178 |
| BspACI | CCGC | 1 cut(s) | 211 |
| BspTNI | GGTCTC | 1 cut(s) | 62 |
| BsrDI | GCAATG | 1 cut(s) | 350 |
| BssECI | CCNNGG | 1 cut(s) | 135 |
| BssMI | GATC | 1 cut(s) | 178 |
| BssT1I | CCWWGG | 1 cut(s) | 135 |
| Bst4CI | ACNGT | 2 cut(s) | 49, 304 |
| BstC8I | GCNNGC | 2 cut(s) | 250, 276 |
| BstDEI | CTNAG | 2 cut(s) | 8, 156 |
| BstF5I | GGATG | 1 cut(s) | 18 |
| BstKTI | GATC | 1 cut(s) | 181 |
| BstMAI | GTCTC | 2 cut(s) | 62, 339 |
| BstMBI | GATC | 1 cut(s) | 178 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 245, 271 |
| BstNSI | RCATGY | 1 cut(s) | 174 |
| BtsCI | GGATG | 1 cut(s) | 18 |
| BtsIMutI | CAGTG | 2 cut(s) | 300, 364 |
| Cac8I | GCNNGC | 2 cut(s) | 250, 276 |
| CviAII | CATG | 4 cut(s) | 73, 166, 171, 193 |
| CviJI | RGCY | 2 cut(s) | 115, 140 |
| CviKI_1 | RGCY | 2 cut(s) | 115, 140 |
| DdeI | CTNAG | 2 cut(s) | 8, 156 |
| DpnI | GATC | 1 cut(s) | 180 |
| DpnII | GATC | 1 cut(s) | 178 |
| Eco130I | CCWWGG | 1 cut(s) | 135 |
| Eco31I | GGTCTC | 1 cut(s) | 62 |
| Eco32I | GATATC | 1 cut(s) | 102 |
| EcoRV | GATATC | 1 cut(s) | 102 |
| EcoT14I | CCWWGG | 1 cut(s) | 135 |
| ErhI | CCWWGG | 1 cut(s) | 135 |
| FaeI | CATG | 4 cut(s) | 76, 169, 174, 196 |
| FaiI | YATR | 7 cut(s) | 74, 96, 167, 172, 194, 284, 326 |
| FatI | CATG | 4 cut(s) | 72, 165, 170, 192 |
| FokI | GGATG | 1 cut(s) | 25 |
| FspBI | CTAG | 1 cut(s) | 315 |
| Hin1II | CATG | 4 cut(s) | 76, 169, 174, 196 |
| HincII | GTYRAC | 1 cut(s) | 52 |
| HindII | GTYRAC | 1 cut(s) | 52 |
| HinfI | GANTC | 1 cut(s) | 4 |
| Hpy166II | GTNNAC | 1 cut(s) | 52 |
| Hpy188I | TCNGA | 1 cut(s) | 339 |
| Hpy188III | TCNNGA | 1 cut(s) | 185 |
| Hpy8I | GTNNAC | 1 cut(s) | 52 |
| HpyAV | CCTTC | 1 cut(s) | 73 |
| HpyCH4III | ACNGT | 2 cut(s) | 49, 304 |
| HpyCH4V | TGCA | 3 cut(s) | 44, 165, 343 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 245, 271 |
| HpyF3I | CTNAG | 2 cut(s) | 8, 156 |
| Hsp92II | CATG | 4 cut(s) | 76, 169, 174, 196 |
| Kzo9I | GATC | 1 cut(s) | 178 |
| LmnI | GCTCC | 1 cut(s) | 245 |
| LpnPI | CCDG | 2 cut(s) | 182, 228 |
| LweI | GCATC | 2 cut(s) | 23, 330 |
| MaeI | CTAG | 1 cut(s) | 315 |
| MaeIII | GTNAC | 1 cut(s) | 362 |
| MalI | GATC | 1 cut(s) | 180 |
| MboI | GATC | 1 cut(s) | 178 |
| MboII | GAAGA | 3 cut(s) | 116, 173, 234 |
| MluCI | AATT | 3 cut(s) | 27, 146, 358 |
| MnlI | CCTC | 2 cut(s) | 58, 227 |
| MslI | CAYNNNNRTG | 2 cut(s) | 197, 323 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 245, 271 |
| NdeII | GATC | 1 cut(s) | 178 |
| NlaIII | CATG | 4 cut(s) | 76, 169, 174, 196 |
| NmuCI | GTSAC | 1 cut(s) | 362 |
| NspI | RCATGY | 1 cut(s) | 174 |
| PfeI | GAWTC | 1 cut(s) | 4 |
| RseI | CAYNNNNRTG | 2 cut(s) | 197, 323 |
| Sau3AI | GATC | 1 cut(s) | 178 |
| SfaNI | GCATC | 2 cut(s) | 23, 330 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 197, 323 |
| Sse9I | AATT | 3 cut(s) | 27, 146, 358 |
| SsiI | CCGC | 1 cut(s) | 211 |
| SspMI | CTAG | 1 cut(s) | 315 |
| StyI | CCWWGG | 1 cut(s) | 135 |
| TaaI | ACNGT | 2 cut(s) | 49, 304 |
| TasI | AATT | 3 cut(s) | 27, 146, 358 |
| TfiI | GAWTC | 1 cut(s) | 4 |
| TscAI | CASTG | 1 cut(s) | 307 |
| TseFI | GTSAC | 1 cut(s) | 362 |
| Tsp45I | GTSAC | 1 cut(s) | 362 |
| TspDTI | ATGAA | 2 cut(s) | 17, 92 |
| TspRI | CASTG | 1 cut(s) | 307 |
| XceI | RCATGY | 1 cut(s) | 174 |
| XspI | CTAG | 1 cut(s) | 315 |