Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8234657.1

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 558

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8234657.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 181 bp

atggttgttgatgcagttaaagatgtagtcttgcaactgaggccattgctttccacaaagaagctgcttgtttcaattgcagctggagtcaaattgaaagatctccaggattgggccggtcacagccgatttatcagggtaatgcccaatactccttctgctgttggtgttgcagcatcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

60

Amino Acids

6.41

Weight (kDa)

10.16

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	2 cut(s)	75, 97
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	2 cut(s)	64, 83
AluI	AGCT	2 cut(s)	64, 83
AoxI	GGCC	2 cut(s)	41, 114
ApeKI	GCWGC	3 cut(s)	64, 80, 173
AspS9I	GGNCC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	51, 92
BciT130I	CCWGG	1 cut(s)	107
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	3 cut(s)	65, 81, 174
BlsI	GCNGC	3 cut(s)	66, 82, 175
Bme1390I	CCNGG	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	107
BpmI	CTGGAG	2 cut(s)	89, 105
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	51, 92
BshFI	GGCC	2 cut(s)	43, 116
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	1 cut(s)	112
BsnI	GGCC	2 cut(s)	43, 116
Bsp143I	GATC	1 cut(s)	100
BspANI	GGCC	2 cut(s)	43, 116
BspCNI	CTCAG	1 cut(s)	30
BsrDI	GCAATG	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssMI	GATC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	38
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	51, 92
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	43, 116
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	114
CviJI	RGCY	5 cut(s)	43, 64, 83, 116, 126
CviKI_1	RGCY	5 cut(s)	43, 64, 83, 116, 126
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	105
Fnu4HI	GCNGC	3 cut(s)	65, 81, 174
Fsp4HI	GCNGC	3 cut(s)	65, 81, 174
GluI	GCNGC	3 cut(s)	65, 81, 174
GsuI	CTGGAG	2 cut(s)	89, 105
HaeIII	GGCC	2 cut(s)	43, 116
HapII	CCGG	1 cut(s)	117
HinfI	GANTC	1 cut(s)	87
HpaII	CCGG	1 cut(s)	117
HpyAV	CCTTC	1 cut(s)	165
HpyCH4V	TGCA	4 cut(s)	14, 34, 80, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	5 cut(s)	69, 92, 119, 121, 130
Lsp1109I	GCAGC	2 cut(s)	51, 92
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MfeI	CAATTG	1 cut(s)	75
MflI	RGATCY	1 cut(s)	100
MluCI	AATT	2 cut(s)	75, 92
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	1 cut(s)	33
MseI	TTAA	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	107
MunI	CAATTG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	40
NdeII	GATC	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	105
PkrI	GCNGC	3 cut(s)	66, 82, 175
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	3 cut(s)	65, 81, 174
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	1 cut(s)	107
SetI	ASST	2 cut(s)	66, 85
SgeI	CNNG	7 cut(s)	43, 80, 96, 118, 119, 129, 148
Sse9I	AATT	2 cut(s)	75, 92
StyD4I	CCNGG	1 cut(s)	105
TasI	AATT	2 cut(s)	75, 92
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	3 cut(s)	64, 80, 173
Tsp45I	GTSAC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.