Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Forward (+)

24027837 .. 24031094

Gene Structure 3258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG111100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAGGAGCTTGGATCAGTTCAAGTCCCTATCCAAATCGGTCTCAGAAGGACCTCCGAGGACGTTCGCCTACTCTTCACGTCCGCCGGAGTCGACTTTGTTGGGAAGCTTGGCGAATTTGAAGCTCACCGCAGAGAAATTGGTGAAGGAGCAAGCTTCTGTGAAAACAGATCTGGAAATGGCAATTGGAAGGCAACTGTATTCCAATCTGATGCACAGGCATGAGACTCCCCAGGTTGAAATTGCTAATGCACACGATGACAGTGTGTGGGATCTCCAATGGCACCCTATTGGCTATATTCTTTGCAGGTTGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.88

Weight (kDa)

6.9

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	297
AccB1I	GGYRCC	1 cut(s)	282
AccI	GTMKAC	1 cut(s)	92
AciI	CCGC	2 cut(s)	83, 129
AclWI	GGATC	2 cut(s)	21, 279
AcsI	RAATTY	1 cut(s)	115
AgsI	TTSAA	3 cut(s)	22, 121, 239
AjiI	CACGTC	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	231
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AluBI	AGCT	4 cut(s)	9, 108, 124, 155
AluI	AGCT	4 cut(s)	9, 108, 124, 155
Alw26I	GTCTC	2 cut(s)	46, 218
AlwI	GGATC	2 cut(s)	21, 279
ApoI	RAATTY	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	118, 154
AvaII	GGWCC	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	282
BciT130I	CCWGG	1 cut(s)	233
BcoDI	GTCTC	2 cut(s)	46, 218
BfuAI	ACCTGC	1 cut(s)	297
BglII	AGATCT	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	50
BmgBI	CACGTC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	56, 231
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	56, 231
BseMII	CTCAG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	19
BshNI	GGYRCC	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	10
BsmAI	GTCTC	2 cut(s)	46, 218
BsmFI	GGGAC	1 cut(s)	10
Bso31I	GGTCTC	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	13, 169, 271
BspACI	CCGC	2 cut(s)	83, 129
BspCNI	CTCAG	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	284
BspMI	ACCTGC	1 cut(s)	297
BspPI	GGATC	2 cut(s)	21, 279
BspT107I	GGYRCC	1 cut(s)	282
BspTNI	GGTCTC	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	56, 231
BssMI	GATC	3 cut(s)	13, 169, 271
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	2 cut(s)	198, 263
Bst6I	CTCTTC	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	43
BstKTI	GATC	3 cut(s)	16, 172, 274
BstMAI	GTCTC	2 cut(s)	46, 218
BstMBI	GATC	3 cut(s)	13, 169, 271
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	231
BstX2I	RGATCY	2 cut(s)	169, 271
BstYI	RGATCY	2 cut(s)	169, 271
BtrI	CACGTC	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	268
BveI	ACCTGC	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	50
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	5 cut(s)	9, 108, 124, 155, 294
CviKI_1	RGCY	5 cut(s)	9, 108, 124, 155, 294
DdeI	CTNAG	1 cut(s)	43
DpnI	GATC	3 cut(s)	15, 171, 273
DpnII	GATC	3 cut(s)	13, 169, 271
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	231
FaeI	CATG	1 cut(s)	224
FaiI	YATR	2 cut(s)	222, 297
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	92
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	1 cut(s)	224
HincII	GTYRAC	2 cut(s)	93, 312
HindII	GTYRAC	2 cut(s)	93, 312
HindIII	AAGCTT	2 cut(s)	106, 153
HinfI	GANTC	2 cut(s)	89, 226
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	2 cut(s)	118, 154
Hpy166II	GTNNAC	2 cut(s)	93, 312
Hpy188I	TCNGA	3 cut(s)	46, 57, 210
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	2 cut(s)	93, 312
HpyAV	CCTTC	3 cut(s)	41, 139, 183
HpyCH4III	ACNGT	2 cut(s)	198, 263
HpyCH4IV	ACGT	2 cut(s)	62, 79
HpyCH4V	TGCA	3 cut(s)	214, 251, 306
HpyF3I	CTNAG	1 cut(s)	43
HpySE526I	ACGT	2 cut(s)	62, 79
Hsp92II	CATG	1 cut(s)	224
Kzo9I	GATC	3 cut(s)	13, 169, 271
LmnI	GCTCC	2 cut(s)	6, 148
LpnPI	CCDG	6 cut(s)	99, 158, 202, 218, 245, 292
LweI	GCATC	1 cut(s)	201
MaeII	ACGT	2 cut(s)	62, 79
MalI	GATC	3 cut(s)	15, 171, 273
MboI	GATC	3 cut(s)	13, 169, 271
MboII	GAAGA	1 cut(s)	66
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	2 cut(s)	169, 271
MluCI	AATT	4 cut(s)	115, 137, 183, 240
MlyI	GAGTC	2 cut(s)	98, 220
MnlI	CCTC	2 cut(s)	51, 63
MseI	TTAA	1 cut(s)	316
MslI	CAYNNNNRTG	1 cut(s)	219
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	233
MunI	CAATTG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	233
NdeII	GATC	3 cut(s)	13, 169, 271
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	284
PleI	GAGTC	2 cut(s)	97, 220
PpsI	GAGTC	2 cut(s)	97, 220
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	50
PspPPI	RGGWCCY	1 cut(s)	50
PsuI	RGATCY	2 cut(s)	169, 271
RseI	CAYNNNNRTG	1 cut(s)	219
SalI	GTCGAC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	316
Sau3AI	GATC	3 cut(s)	13, 169, 271
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	2 cut(s)	98, 220
ScrFI	CCNGG	1 cut(s)	233
SetI	ASST	9 cut(s)	11, 55, 65, 82, 110, 126, 157, 237, 311
SfaNI	GCATC	1 cut(s)	201
SinI	GGWCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	219
Sse9I	AATT	4 cut(s)	115, 137, 183, 240
SsiI	CCGC	2 cut(s)	83, 129
StyD4I	CCNGG	1 cut(s)	231
TaaI	ACNGT	2 cut(s)	198, 263
TaiI	ACGT	2 cut(s)	65, 82
TaqI	TCGA	1 cut(s)	92
TaqII	GACCGA	1 cut(s)	28
TasI	AATT	4 cut(s)	115, 137, 183, 240
Tru1I	TTAA	1 cut(s)	316
Tru9I	TTAA	1 cut(s)	316
TscAI	CASTG	1 cut(s)	268
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.