Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Reverse (-)

38616194 .. 38618229

Gene Structure 2036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49718

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGAGGCGCTACCCATCCCGACGGAGACCTACAAGCATGGGTTCATCGGAGCAGGTAAACTGGCGGAGAGCATCGCCAGAGGAGTCATCCGATCAGGCATTCTTCGGCCAAAAATCGCATCACTACCTGCCACTCCAGCCCCATTCGACGCCAAGCCTTCGAGTCCTTCGGCGTCCACCTCCTCCCTCGCAACGACGACGTGGTTGAAGAGAGTGATGTCATCATTTTCGCGGTCAAACCTCAAGTTGGTATTCAAAGATGTAGTTTTGCAACTGAGGCCATTGCTTTCCAGAAAGAAGCTGCTTATTTCAATTGCAGCTGGAGTCAAATTGAAAGATCTCCAGGATTGGGCCGGTCACAGCCGATTTATCAGGGTAATGCCTAATACTCCTTCTGCTGTTGGTGTTGCAGCATCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

140

Amino Acids

14.92

Weight (kDa)

11.07

Isoelectric Point (pI)

52.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	44, 136
AccII	CGCG	1 cut(s)	232
AciI	CCGC	2 cut(s)	65, 232
AcoI	YGGCCR	1 cut(s)	107
AcyI	GRCGYC	2 cut(s)	150, 173
AfiI	CCNNNNNNNGG	2 cut(s)	247, 349
AgsI	TTSAA	4 cut(s)	208, 256, 312, 334
AjiI	CACGTC	1 cut(s)	201
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	2 cut(s)	301, 320
AluI	AGCT	2 cut(s)	301, 320
Alw26I	GTCTC	1 cut(s)	20
AoxI	GGCC	3 cut(s)	107, 278, 351
ApeKI	GCWGC	3 cut(s)	301, 317, 410
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	288, 329
BccI	CCATC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	344
BcoDI	GTCTC	1 cut(s)	20
BfoI	RGCGCY	1 cut(s)	11
BfuAI	ACCTGC	2 cut(s)	44, 136
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	3 cut(s)	302, 318, 411
BlsI	GCNGC	3 cut(s)	303, 319, 412
Bme1390I	CCNGG	1 cut(s)	344
BmgBI	CACGTC	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	2 cut(s)	81, 128
BpmI	CTGGAG	3 cut(s)	120, 326, 342
BpuEI	CTTGAG	1 cut(s)	227
BsaHI	GRCGYC	2 cut(s)	150, 173
BsaI	GGTCTC	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 349
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	344
BseGI	GGATG	2 cut(s)	15, 87
BseLI	CCNNNNNNNGG	2 cut(s)	247, 349
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	2 cut(s)	96, 172
BseXI	GCAGC	2 cut(s)	288, 329
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	3 cut(s)	109, 280, 353
BsiSI	CCGG	1 cut(s)	354
BslI	CCNNNNNNNGG	2 cut(s)	247, 349
BsmAI	GTCTC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	3 cut(s)	109, 280, 353
Bso31I	GGTCTC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	92, 337
BspACI	CCGC	2 cut(s)	65, 232
BspANI	GGCC	3 cut(s)	109, 280, 353
BspCNI	CTCAG	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	232
BspMI	ACCTGC	2 cut(s)	44, 136
BspTNI	GGTCTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	353
BssMI	GATC	2 cut(s)	92, 337
BssNI	GRCGYC	2 cut(s)	150, 173
Bst2UI	CCWGG	1 cut(s)	344
Bst6I	CTCTTC	1 cut(s)	203
BstACI	GRCGYC	2 cut(s)	150, 173
BstDEI	CTNAG	1 cut(s)	275
BstF5I	GGATG	2 cut(s)	15, 87
BstFNI	CGCG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	95, 340
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	2 cut(s)	92, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 277
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	342
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	2 cut(s)	288, 329
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	3 cut(s)	109, 280, 353
BtgZI	GCGATG	1 cut(s)	58
BtrI	CACGTC	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	15, 87
BveI	ACCTGC	2 cut(s)	44, 136
CfoI	GCGC	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	351
CseI	GACGC	2 cut(s)	158, 162
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	8 cut(s)	109, 140, 157, 280, 301, 320, 353, 363
CviKI_1	RGCY	8 cut(s)	109, 140, 157, 280, 301, 320, 353, 363
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	2 cut(s)	94, 339
DpnII	GATC	2 cut(s)	92, 337
EaeI	YGGCCR	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
EciI	GGCGGA	1 cut(s)	80
Eco31I	GGTCTC	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	342
FaeI	CATG	1 cut(s)	41
FaiI	YATR	1 cut(s)	39
FatI	CATG	1 cut(s)	37
Fnu4HI	GCNGC	3 cut(s)	302, 318, 411
FokI	GGATG	2 cut(s)	2, 74
Fsp4HI	GCNGC	3 cut(s)	302, 318, 411
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	3 cut(s)	302, 318, 411
GsuI	CTGGAG	3 cut(s)	120, 326, 342
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	3 cut(s)	109, 280, 353
HapII	CCGG	1 cut(s)	354
HgaI	GACGC	2 cut(s)	158, 162
HhaI	GCGC	1 cut(s)	10
Hin1I	GRCGYC	2 cut(s)	150, 173
Hin1II	CATG	1 cut(s)	41
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	3 cut(s)	84, 163, 324
HpaII	CCGG	1 cut(s)	354
Hpy166II	GTNNAC	2 cut(s)	59, 177
Hpy188I	TCNGA	2 cut(s)	50, 92
Hpy188III	TCNNGA	2 cut(s)	19, 291
Hpy8I	GTNNAC	2 cut(s)	59, 177
Hpy99I	CGWCG	4 cut(s)	25, 152, 199, 202
HpyAV	CCTTC	3 cut(s)	168, 177, 402
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	3 cut(s)	271, 317, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 277
HpyF3I	CTNAG	1 cut(s)	275
HpySE526I	ACGT	1 cut(s)	200
Hsp92I	GRCGYC	2 cut(s)	150, 173
Hsp92II	CATG	1 cut(s)	41
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	92, 337
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	2 cut(s)	288, 329
LweI	GCATC	2 cut(s)	81, 128
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	2 cut(s)	94, 339
MboI	GATC	2 cut(s)	92, 337
MboII	GAAGA	2 cut(s)	95, 220
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	1 cut(s)	337
MluCI	AATT	2 cut(s)	312, 329
MlyI	GAGTC	3 cut(s)	93, 172, 333
MnlI	CCTC	6 cut(s)	74, 190, 193, 197, 251, 270
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	354
MspR9I	CCNGG	1 cut(s)	344
MunI	CAATTG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	2 cut(s)	137, 277
NdeII	GATC	2 cut(s)	92, 337
NlaIII	CATG	1 cut(s)	41
NmuCI	GTSAC	1 cut(s)	356
PctI	GAATGC	1 cut(s)	99
PfoI	TCCNGGA	1 cut(s)	342
PkrI	GCNGC	3 cut(s)	303, 319, 412
PleI	GAGTC	3 cut(s)	92, 171, 332
PpsI	GAGTC	3 cut(s)	92, 171, 332
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	320
SatI	GCNGC	3 cut(s)	302, 318, 411
Sau3AI	GATC	2 cut(s)	92, 337
Sau96I	GGNCC	1 cut(s)	351
SchI	GAGTC	3 cut(s)	93, 172, 333
ScrFI	CCNGG	1 cut(s)	344
SetI	ASST	9 cut(s)	32, 58, 130, 182, 203, 243, 303, 322, 421
SfaNI	GCATC	2 cut(s)	81, 128
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	2 cut(s)	312, 329
SsiI	CCGC	2 cut(s)	65, 232
StyD4I	CCNGG	1 cut(s)	342
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	2 cut(s)	147, 161
TasI	AATT	2 cut(s)	312, 329
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	3 cut(s)	301, 317, 410
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	1 cut(s)	34
TspGWI	ACGGA	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.