Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Forward (+)

31790768 .. 31792515

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG159800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGGGATTAGATCGATGCGGAGTGGATTGGACCGAGTTGGATCGGCGCGATATCGGAGATTGACTGGCGGCCTCGAATCCGTGGAGGCACTGGGTAGTTCGGATCGGATCTGGTTCTTCATGGATCAGATCTGGGAAAAGGTGGATTTGGATGCGGAGTCATGCTCGATGGGTGATCTGTCATTGGAGGCGGCCGTGATGAGGCTGACGCAAGGTGGTGGGGCTTGTATTCTGTCTGGGCTTGGTCGACGATGCCCGGTTGTTGGTAGTCGGGGTTTGATGGCAGGGGTGGGCCTGGCGGTTCCTGCTTTGGTTCTTAACTGTGAGCCGAACATTGACTTCAAGAAAGATATTGAAGCAAAGAGGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004137 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006220 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009116 GO:0009117 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009163 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034404 GO:0034641 GO:0034654 GO:0042802 GO:0042803 GO:0043094 GO:0043097 GO:0043101 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046134 GO:0046483 GO:0046983 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dNK

Protein Analysis

123

Amino Acids

13.25

Weight (kDa)

7.64

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	247
AccII	CGCG	1 cut(s)	49
AciI	CCGC	5 cut(s)	19, 69, 155, 191, 299
AclWI	GGATC	4 cut(s)	49, 111, 116, 132
AcoI	YGGCCR	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	201, 263
AgsI	TTSAA	2 cut(s)	343, 356
AjnI	CCWGG	1 cut(s)	294
AlwI	GGATC	4 cut(s)	49, 111, 116, 132
AoxI	GGCC	3 cut(s)	70, 192, 292
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	31, 292
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	31
BccI	CCATC	2 cut(s)	163, 274
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	296
BcnI	CCSGG	1 cut(s)	257
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	2 cut(s)	70, 192
BlsI	GCNGC	2 cut(s)	71, 193
Bme1390I	CCNGG	2 cut(s)	257, 296
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	31, 292
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	2 cut(s)	257, 296
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	3 cut(s)	6, 142, 242
BmuI	ACTGGG	1 cut(s)	101
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpuMI	CCSGG	1 cut(s)	257
Bsa29I	ATCGAT	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 263
Bse1I	ACTGG	2 cut(s)	70, 96
BseBI	CCWGG	1 cut(s)	296
BseCI	ATCGAT	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	2 cut(s)	201, 263
BseNI	ACTGG	2 cut(s)	70, 96
BseX3I	CGGCCG	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	49
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	3 cut(s)	72, 194, 294
BshVI	ATCGAT	1 cut(s)	14
BsiEI	CGRYCG	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	2 cut(s)	201, 263
BsnI	GGCC	3 cut(s)	72, 194, 294
Bsp143I	GATC	7 cut(s)	11, 41, 103, 108, 124, 129, 175
BspACI	CCGC	5 cut(s)	19, 69, 155, 191, 299
BspANI	GGCC	3 cut(s)	72, 194, 294
BspDI	ATCGAT	1 cut(s)	14
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	4 cut(s)	49, 111, 116, 132
BsrI	ACTGG	2 cut(s)	70, 96
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	7 cut(s)	11, 41, 103, 108, 124, 129, 175
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	323
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	7 cut(s)	14, 44, 106, 111, 127, 132, 178
BstMBI	GATC	7 cut(s)	11, 41, 103, 108, 124, 129, 175
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	2 cut(s)	255, 294
BstUI	CGCG	1 cut(s)	49
BstX2I	RGATCY	2 cut(s)	108, 129
BstYI	RGATCY	2 cut(s)	108, 129
BstZI	CGGCCG	1 cut(s)	192
Bsu15I	ATCGAT	1 cut(s)	14
BsuRI	GGCC	3 cut(s)	72, 194, 294
BsuTUI	ATCGAT	1 cut(s)	14
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	89
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	31, 292
ClaI	ATCGAT	1 cut(s)	14
CseI	GACGC	1 cut(s)	217
CviAII	CATG	2 cut(s)	121, 162
CviJI	RGCY	7 cut(s)	72, 194, 205, 224, 241, 294, 328
CviKI_1	RGCY	7 cut(s)	72, 194, 205, 224, 241, 294, 328
DpnI	GATC	7 cut(s)	13, 43, 105, 110, 126, 131, 177
DpnII	GATC	7 cut(s)	11, 41, 103, 108, 124, 129, 175
EaeI	YGGCCR	1 cut(s)	192
EagI	CGGCCG	1 cut(s)	192
EclXI	CGGCCG	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	31
Eco52I	CGGCCG	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	294
EcoRV	GATATC	1 cut(s)	53
FaeI	CATG	2 cut(s)	124, 165
FaiI	YATR	2 cut(s)	122, 163
FatI	CATG	2 cut(s)	120, 161
FblI	GTMKAC	1 cut(s)	247
Fnu4HI	GCNGC	2 cut(s)	70, 192
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	2 cut(s)	70, 192
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	2 cut(s)	70, 192
HaeIII	GGCC	3 cut(s)	72, 194, 294
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	2 cut(s)	124, 165
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	248
HindII	GTYRAC	1 cut(s)	248
HinfI	GANTC	2 cut(s)	77, 158
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	4 cut(s)	57, 103, 108, 129
Hpy188III	TCNNGA	1 cut(s)	343
Hpy8I	GTNNAC	1 cut(s)	248
Hpy99I	CGWCG	1 cut(s)	252
HpyCH4III	ACNGT	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
Hsp92II	CATG	2 cut(s)	124, 165
HspAI	GCGC	1 cut(s)	47
Kzo9I	GATC	7 cut(s)	11, 41, 103, 108, 124, 129, 175
LweI	GCATC	3 cut(s)	6, 142, 242
MalI	GATC	7 cut(s)	13, 43, 105, 110, 126, 131, 177
MboI	GATC	7 cut(s)	11, 41, 103, 108, 124, 129, 175
MboII	GAAGA	1 cut(s)	109
MflI	RGATCY	2 cut(s)	108, 129
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	5 cut(s)	79, 83, 181, 195, 357
MseI	TTAA	1 cut(s)	318
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	257, 296
MvaI	CCWGG	1 cut(s)	296
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	305
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	7 cut(s)	11, 41, 103, 108, 124, 129, 175
NlaIII	CATG	2 cut(s)	124, 165
NlaIV	GGNNCC	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	71, 193
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	2 cut(s)	31, 292
PsuI	RGATCY	2 cut(s)	108, 129
SalI	GTCGAC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	70, 192
Sau3AI	GATC	7 cut(s)	11, 41, 103, 108, 124, 129, 175
Sau96I	GGNCC	2 cut(s)	31, 292
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	257, 296
SetI	ASST	2 cut(s)	144, 217
SfaNI	GCATC	3 cut(s)	6, 142, 242
SinI	GGWCC	1 cut(s)	31
SsiI	CCGC	5 cut(s)	19, 69, 155, 191, 299
StyD4I	CCNGG	2 cut(s)	255, 294
TaaI	ACNGT	1 cut(s)	323
TaqI	TCGA	4 cut(s)	14, 75, 167, 247
TaqII	GACCGA	1 cut(s)	48
TauI	GCSGC	2 cut(s)	72, 194
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	1 cut(s)	96
TspDTI	ATGAA	1 cut(s)	109
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.